BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G32765.1

Length=616
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg321011 jgi|Araly1|321011|fgenesh1_pm.C_scaffold_4001068           451    2e-126


> Ahg321011 jgi|Araly1|321011|fgenesh1_pm.C_scaffold_4001068
Length=324

 Score =  451 bits (244),  Expect = 2e-126
 Identities = 303/330 (92%), Gaps = 9/330 (3%)
 Strand=Plus/Plus

Query  107  ATGGTGAGTTCCACAGACACAATCTCTGCTTCATTTGTATCAAAGAAGTCTCGATCTCCT  166
            |||||||||||| ||| ||| ||||||||||||||||||||||||| |||||||||||||
Sbjct  1    ATGGTGAGTTCCTCAGGCACCATCTCTGCTTCATTTGTATCAAAGAGGTCTCGATCTCCT  60

Query  167  GAAACATCACCCCAT-ATGAAAG-TCACTCTCAAGGTCAAGAACCAACAGGGAGCAGAGG  224
            | || | |||||||| | | ||| | ||||||||||||||||||||||||||||||||||
Sbjct  61   G-AA-A-CACCCCATCA-G-AAGATTACTCTCAAGGTCAAGAACCAACAGGGAGCAGAGG  115

Query  225  ATTTGTATAAAATTGGAACTCATGCACATCTAAAGAAACTAATGAGTGCTTACTGTACGA  284
            || |||| ||||| ||| ||||||||||||||||||||||||||||||||||||||| ||
Sbjct  116  ATCTGTACAAAATAGGAGCTCATGCACATCTAAAGAAACTAATGAGTGCTTACTGTATGA  175

Query  285  AGAGAAACTTAGATTACAGTTCTGTCCGATTCGTCTACAATGGTAGAGAAATCAAAGCTC  344
            ||||||||||||||||| |||||||||||||||||||||| |||||||| |||||||| |
Sbjct  176  AGAGAAACTTAGATTACGGTTCTGTCCGATTCGTCTACAACGGTAGAGAGATCAAAGCAC  235

Query  345  GACAGACTCCTGCTCAGCTGCACATGGAAGAAGAAGATGAGATCTGTATG-GTCATGGAA  403
            |||||||||||||||||||| | |||||||||||||||||||||||| |  |||||||||
Sbjct  236  GACAGACTCCTGCTCAGCTGAAGATGGAAGAAGAAGATGAGATCTGT-TCAGTCATGGAA  294

Query  404  CTTGGTGGTGGCGGTCCTTACACTCCTTGA  433
            ||||| ||||||||||||||||||||||||
Sbjct  295  CTTGGCGGTGGCGGTCCTTACACTCCTTGA  324



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22530643947


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5