BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G32770.3
Length=1725
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482215 jgi|Araly1|482215|fgenesh2_kg.4__1275__AT2G32770.3 2617 0.0
> Ahg482215 jgi|Araly1|482215|fgenesh2_kg.4__1275__AT2G32770.3
Length=1698
Score = 2617 bits (1417), Expect = 0.0
Identities = 1614/1708 (94%), Gaps = 17/1708 (1%)
Strand=Plus/Plus
Query 12 AAATGGTGGTAAAATATACAATGTCGATGTCCTTTTTCGTCATTTTCGCTTCTACTGTTA 71
||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1 AAATGGTGGTAAAATGTACAATGTCGATGTCCTTTTTCGTCATTTTCGCTTCAACTGTTA 60
Query 72 CTATCATCGTTCATGGTTTCCCAT-CGACACTCGACGGTCCGCTTAACCCCGTTACTGCT 130
|||||||||||||||||||||| | |||| ||||||||||||||||||||||| ||||||
Sbjct 61 CTATCATCGTTCATGGTTTCCC-TACGACGCTCGACGGTCCGCTTAACCCCGTGACTGCT 119
Query 131 CCACTCGACCCGAATCTTAACCCGATTGCATTCGACTTACCAGAATCCGACCCGAGTTTC 190
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 120 CCACTCGACCCGAATCTTAACCCGATTGCATTCGACTTGCCAGAATCCGACCCGAGTTTC 179
Query 191 GTAAAACCCATTTCGGAGTTTCTTCTTCCCGAACAGAtctctgtctctctctctTACAGC 250
|||||||||| ||||| |||||||| ||| |||||||||||||||||||||||||||||
Sbjct 180 GTAAAACCCAATTCGGGGTTTCTTC--CCC-AACAGATCTCTGTCTCTCTCTCTTACAGC 236
Query 251 TTTGACTCCGTCTGGATTTCTTGGGTCACAGGGGAATACCAAATTGGTGAAAAAGATTCT 310
||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||
Sbjct 237 TTTGACTCCGTCTGGATTTCTTGGGTCACAGGGGATTACCAAATTGGTGAAGAAGATTCT 296
Query 311 GCACCTCTGGATCCTAATTGTGTGCAAAGCATAGTTCAATACCGTGAATTCGATGTTCGT 370
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 297 GCACCTCTGGATCCTAATTGTGTGCAAAGCATAGTCCAATACCGTGAATTCGATGTCCGT 356
Query 371 CGTACTAGGAAGCAAAATGCAACAGGCCATTCTATTGTTTATAACCAACAGTATTC-TTC 429
|||||| || |||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 357 AGTACTATAAATAAAAATGCAACAGGCCATTCTATTGTTTATAACCAACAGTA-TCTTTC 415
Query 430 TGAGAATGGTTTCATGAACTATACTTCAGGCATCATTCACCATGTTCAACTCACAGGTCT 489
|||||||||| ||| ||||||||| ||||| ||||| |||||||||||||||||||||||
Sbjct 416 TGAGAATGGTCTCAAGAACTATACATCAGGTATCATCCACCATGTTCAACTCACAGGTCT 475
Query 490 TAAACCAAACACATTGTACCGATACCAATGCGGAGACCCGTCTTTATCAGCAATGAGCAA 549
|||||||||||||||||| ||||||| ||| ||||||| |||||||||||||||||||||
Sbjct 476 TAAACCAAACACATTGTATCGATACCGATGTGGAGACCTGTCTTTATCAGCAATGAGCAA 535
Query 550 AGAGTATTACTTCAGGACAATGCCTAAGTCTACATCAGAGAATTATCCACACAGAATCGT 609
||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 536 AGAGTATTACTTCAGGACAATGCCTAAGTCTACATCAGAGAATTACCCGCACAGAATCGT 595
Query 610 TGTGGCTGGAGATTTGGGTCTTACTTACAACACATCAACT-GTTTTGGGGCATATTCTGT 668
|||||||||||||||||||||||||||||||||||||| | |||||| | |||||||
Sbjct 596 TGTGGCTGGAGATTTGGGTCTTACTTACAACACATCAA-TAGTTTTGACAAAGATTCTGT 654
Query 669 CTAACCATCCAGATCTTGTGGTTTTACTTGGAGGATTCAGCTACGCTGATACTTATCTTG 728
|||||||||| ||||||||||||||| ||||||||||||||||||| ||||||||||| |
Sbjct 655 CTAACCATCCTGATCTTGTGGTTTTAATTGGAGGATTCAGCTACGCGGATACTTATCTCG 714
Query 729 CGAATAAGACTAAACTAGATTGTAGTTCTTGTCATTGTGACCAAAATGGAACTAGTTCTG 788
||||||| |||||||||||||||||||||||||||||||| |||| ||||| ||||||
Sbjct 715 CGAATAACACTAAACTAGATTGTAGTTCTTGTCATTGTGAGAAAAACGGAACCAGTTCTA 774
Query 789 ATTGTGGTTCTTGTTATTCTAGTGGAGAAACTTATCAGCCTCGCTGGGATTATTGGGGAA 848
||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||
Sbjct 775 ATTGTGGTTCTTGTTATTCAAGTCGAGAAACTTATCAGCCTCGCTGGGATTATTGGGGAA 834
Query 849 GGTTCATGGAGCCACTCACGGCTAATGTTCCAACCATGATGGTAGCAGGGGAGCACGAGA 908
|||||||||||||||| || ||||||||||||||||||||||||||||| ||||||||||
Sbjct 835 GGTTCATGGAGCCACTTACAGCTAATGTTCCAACCATGATGGTAGCAGGAGAGCACGAGA 894
Query 909 TTGAGCCGCAGACCGAGAATAATCTGACATTCGCTGCATACAGTTCAAGATTCGCATTCC 968
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 895 TTGAGCCGCAGACCGATAATAATCTGACATTCGCTGCATACAGTTCAAGATTCGCATTCC 954
Query 969 CTTCAAACGAAAGCGGTTCTTTCTCACCATTATACTATTCTTTCAACGCGGGAGGAGCTC 1028
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||
Sbjct 955 CTTCAAACGAAAGCGGTTCTTTCTCACCATTATACTATTCCTTCAACGCGGGAGGAACTC 1014
Query 1029 ATTTCATAGTGCTCAATTCATACACACTTTATGATAACTCATCTGATCAGTATATTTGGC 1088
|||||||||| ||||||||||| |||| ||||||||||||||||||||||||||||||||
Sbjct 1015 ATTTCATAGTCCTCAATTCATATACACCTTATGATAACTCATCTGATCAGTATATTTGGC 1074
Query 1089 TTGAAAGTGACCTGA-TCAAAATAAACAGATCAGAAACTCCATGGGTGGTTGCAACTTGG 1147
||||||||||||||| | | |||||||||||||||||||||||||||||||||||||||
Sbjct 1075 TTGAAAGTGACCTGAGT-ATCATAAACAGATCAGAAACTCCATGGGTGGTTGCAACTTGG 1133
Query 1148 AGTCTTCCTTGGTACAGCACATTCAAAGGGCATTACAGAGAAGCTGAATCAATGAGGATT 1207
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1134 AGTCTTCCTTGGTACAGCACATTCAAAGGGCATTACAGAGAAGCTGAATCCATGAGGATA 1193
Query 1208 CACCTTGAAGACTTGCTCTATAACTACCGAGTCGATATCGTCTTCAATAGTCATGTTGAT 1267
| ||||||||||||||||||| |||||||||||||||| ||||||||||||| ||||||
Sbjct 1194 AATCTTGAAGACTTGCTCTATAGCTACCGAGTCGATATCATCTTCAATAGTCAGGTTGAT 1253
Query 1268 GCATATGAGAGATCAAACAGAGTCTACAACTACAC-GTTAGACCAATGTGGCCCGGTTTA 1326
||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct 1254 GCATATGAGAGATCAAACAGAGTCTACAACTAC-CTGTTAGACCAATGTGGCCCGGTTTA 1312
Query 1327 TATAACAACCGGTGCAGGAGGAGCTGGGAAGCTGGAGACTCAGCATGTAGACGACCCAGG 1386
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1313 TATAACAACCGGTGCAGGAGGAGCTGGGAAGCTGGAGACTCAGCATGTAGATGACCCAGG 1372
Query 1387 AAA-TATTCCAGATCCTTCTCAGAACTACTCGTGCAGATCCAGCGGCTTGAACTCCACGT 1445
||| | | ||||||||||||||||||||||||||||||||||| ||||| |||| |||||
Sbjct 1373 AAACTGT-CCAGATCCTTCTCAGAACTACTCGTGCAGATCCAGTGGCTTTAACTTCACGT 1431
Query 1446 TGGAGCCTGTAAA-AGATGAGACTTGTCCGGTTAAGCAGCCGGAGTATAGCGCATACAGA 1504
||||||||||||| | |||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1432 TGGAGCCTGTAAACA-ATGAGACTTGTCGGGTTAAGCAGCCGGAGTATAGCGCATACAGA 1490
Query 1505 GAAAGCAGCTTCGGTTTCGGTATACTAGAAGTGAAGAATGAGACGCATGCATTGTGGAGC 1564
|| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1491 GAGAGCAGCTTCGGTTTCGGTATGCTAGAAGTGAAGAATGAGACGCATGCATTGTGGAGC 1550
Query 1565 TGGAACCGGAATCAAGACCTGTACTATCTCGCCGCCGACGTAATACATATTGTACGTCAG 1624
|||||||||||||||||||| ||||||||| |||||||||||||| ||||||||||||||
Sbjct 1551 TGGAACCGGAATCAAGACCTTTACTATCTCTCCGCCGACGTAATATATATTGTACGTCAG 1610
Query 1625 CCTGAAATGTGCTCGGTTTGCAACTAAACCAAGTAGTTATACCGGTAGATTTTATAACGT 1684
|||||||||||| |||||||||||||||||||||||||||||| ||||| |||| |||||
Sbjct 1611 CCTGAAATGTGCCCGGTTTGCAACTAAACCAAGTAGTTATACCTGTAGAGTTTACAACGT 1670
Query 1685 TCTACAGTTTACGTAGCCATTATCTATA 1712
||||||||||||||||||||||||||||
Sbjct 1671 TCTACAGTTTACGTAGCCATTATCTATA 1698
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64715326255
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5