BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G32780.1
Length=3252
Score E
Sequences producing significant alignments: (Bits) Value
Ahg901090 jgi|Araly1|901090|Al_scaffold_0004_1740 2017 0.0
Ahg470470 jgi|Araly1|470470|fgenesh2_kg.1__424__AT1G04860.1 320 4e-86
> Ahg901090 jgi|Araly1|901090|Al_scaffold_0004_1740
Length=3297
Score = 2017 bits (1092), Expect = 0.0
Identities = 1350/1473 (92%), Gaps = 23/1473 (2%)
Strand=Plus/Plus
Query 1790 ATAAAACAGTTAGTGCAGGTAAGGGTGAAGCTTCCTCGTCATTCATAAGTAGTGACCATG 1849
||| ||||| ||| |||||| |||| |||||||||||||||||| | || |||||||||
Sbjct 1838 ATATAACAGATAGGGCAGGTGAGGGCGAAGCTTCCTCGTCATTCGTGAGCGGTGACCATG 1897
Query 1850 AA-CAAAACATAGATTATGTTGACTTTAGCAGtttttttGACGAGCCTGAGATATCCGAA 1908
|| ||||| ||||| ||| |||||||||||||||||||||| |||||||||||| |||||
Sbjct 1898 AACCAAAA-ATAGACTATATTGACTTTAGCAGTTTTTTTGATGAGCCTGAGATACCCGAA 1956
Query 1909 AGACCT-TTCTTTCGACCGCTATCTAAATCTGAAGTTTCTGAAGCTGGTTTTAAGGCTGA 1967
||||| || ||| ||| |||||||||| |||||||||||||||||||||||| ||||||
Sbjct 1957 GGACCTGTT-TTTAGACTGCTATCTAAAGCTGAAGTTTCTGAAGCTGGTTTTATGGCTGA 2015
Query 1968 CTGCAGTGATGATAAAACAGTTAGTGCAGGTAAGGGTGAAGCTTCCTCGTCATTCGTAAG 2027
| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2016 CAGCAGTAATGATAAAACAGTTAGTGCAGGTAAGGGTGAAGCTTCCTCGTCATTCGTAAG 2075
Query 2028 CAGTGACCATGAACAAAACATAGATTATGTTGACTTTAGC-AGtttttttGATGAGCCTG 2086
|||||||||||||||||||||||||||||| |||||| || ||||||||||| |||||||
Sbjct 2076 CAGTGACCATGAACAAAACATAGATTATGTGGACTTT-GCCAGTTTTTTTGACGAGCCTG 2134
Query 2087 AGATATCCGAAAGACCTT-TCTTTCGACCGCTATCTAAATCTGAAGTTTCTGAAGCAGGT 2145
| ||||| ||| | |||| | |||||||| ||||||||||||||||||||||||| |||
Sbjct 2135 AAATATCGGAAGGGCCTTAT-TTTCGACCATTATCTAAATCTGAAGTTTCTGAAGCTGGT 2193
Query 2146 TTTATGGCTGTCAGCGGTAATGATAAAACAGTTAGGGCAGGTAAGGGTGAAACTTTTTCT 2205
|||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 2194 TTTATGGCCGTCAGCAGTAATGATAAAACAGTTAGGGCAGGTAAGGGTGAAACTTTTTCG 2253
Query 2206 TCATTCATGAGCGGTGACAATGAACGAAACATAGATTATGTTGAGTTTACTAACAGAATA 2265
|||||||||| ||||||||||||| ||||||||||||||| | | || |||||| ||
Sbjct 2254 TCATTCATGAACGGTGACAATGAAAGAAACATAGATTATGA--A-TCTATTAACAGTTTA 2310
Query 2266 TTCGATGATCGTGGGACATCTGAAAGACCTGTTTTTGGACCACCATCTAAAGCTAAAGTT 2325
|| | || |||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2311 TTTTACGACCGTGAGACATCTGAAAGACCTGTTTTTGGACCACCATCTAAAGCTAAAGTT 2370
Query 2326 TCTGAAGCTGGTTTTGTGGCTGTAAGCAGCGACTCTGATCCTGCAGTTCTTGATGAATCG 2385
||||||||| ||||| ||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 2371 TCTGAAGCTTGTTTTATGGCTGTCAGCAGCGACTCTGATCCTGCAGTTCTTGATGATTCG 2430
Query 2386 GATTCACCAGTGTCTGTAGATAGGTGTTTGGCTCAGTTCACGAAGCATGAGATTTTGTCA 2445
||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||
Sbjct 2431 GATTCACCAGTGTCTGTAGATAGGTGTTTGGCTCAGTTCACCAAGCCTGAGATTTTGTCA 2490
Query 2446 GAAGACAATGCTTGGCATTGTGAGAATTGTTCGAAGAACCTAAAACTTCAGCGGTTGAGA 2505
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 2491 GAAGACAATGCTTGGCATTGTGAGAATTGTTCGAAGAACCTAAAACTTGAGCGGTTGAGA 2550
Query 2506 GAAAAGAGAAGAACTAAAGAAGGATTGAGCAACAG-ATGGGTGAATGAAAATGGAGCTAG 2564
|||||||||| |||| || | | ||||||||| || ||||||||||||||||||||||||
Sbjct 2551 GAAAAGAGAAAAACTGAA-A-G-ATTGAGCAA-AGGATGGGTGAATGAAAATGGAGCTAG 2606
Query 2565 TTCGGCTTTTGATGAGTGTAGAGACAGTTCACTAAATCAATCCTGTATAGATCTCGAAAA 2624
||||| |||||||||||||||||||| |||| ||| ||||||||||||||||| ||||||
Sbjct 2607 TTCGGTTTTTGATGAGTGTAGAGACAATTCATTAAGTCAATCCTGTATAGATCCCGAAAA 2666
Query 2625 CGGTTACAAAGCTGCTCCTCCGATCACAAAATTGCCAAACTGCAAGGAAGAGGAAAGCGC 2684
||| || ||||||||||||||||||||| ||||||||||||||||||||||||||| |||
Sbjct 2667 CGGGTATAAAGCTGCTCCTCCGATCACAGAATTGCCAAACTGCAAGGAAGAGGAAAACGC 2726
Query 2685 AATAGATGATGGATTTGTGGGAGAGGAAAATACAAAGCAAGCTCCAATTACTTCT---GT 2741
||||||||||||| || ||||||| | || ||||||||||||||||||||||| ||
Sbjct 2727 AATAGATGATGGAATTCTGGGAGACTCAGATCCAAAGCAAGCTCCAATTACTTCTTCTGT 2786
Query 2742 TACTGAAACACCTCTCCTCGGTGGAGAAACCATCAGTTCTCAACCAGCCAGTGACAATGA 2801
||||||||| ||| |||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 2787 TACTGAAACTCCTATCCTCGGTGGAGAAACCATCAGTTCTCAACCAGCCAACGACAATGA 2846
Query 2802 ATGTGAAAATTGGGAAGACTTGGCAGTAGATTCTGAAGAA-GTGATAGTAAAAAGAGATG 2860
||||||||| |||||||||||||||||||||||||| ||| |||||||||||||||| ||
Sbjct 2847 ATGTGAAAACTGGGAAGACTTGGCAGTAGATTCTGA-GAAAGTGATAGTAAAAAGAGCTG 2905
Query 2861 CTAGGAAAAAGGTACTTATAAACAAGGCACCACCTGTCTTGACCATACATCTCAAAAGGT 2920
||| |||||||||||| |||||||||||||||||||||||||||| |||||||||||||
Sbjct 2906 CTACTAAAAAGGTACTTGTAAACAAGGCACCACCTGTCTTGACCATTCATCTCAAAAGGT 2965
Query 2921 TCAGCCAAGATGCTCGAGGCAGGGTAAGCAAGCTAAGTGGCCATGTTGATTTCCAAGAGT 2980
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 2966 TCAGCCAAGATGCTCGAGGCAGAATAAGCAAGCTAAGTGGCCATGTTGATTTCCAAGAGT 3025
Query 2981 TCATCGATCTTAGCAAATACATGGACACTAGGTGCTCCGAAGAAGACGAGCCGGTTTACA 3040
|||| ||||||||| |||| ||||| || |||||||||||||||||| ||||||||||||
Sbjct 3026 TCATTGATCTTAGCCAATATATGGATACCAGGTGCTCCGAAGAAGACCAGCCGGTTTACA 3085
Query 3041 GGTTGGCCGGGTTAGTGGAACATTTAGGGGCAATGAGTCGAGGTCATTATGTTTCTTACA 3100
||||||||||||||||||| ||||||||| ||||||| |||||||||||||| ||||||
Sbjct 3086 GGTTGGCCGGGTTAGTGGAGCATTTAGGGACAATGAGAGGAGGTCATTATGTTGCTTACA 3145
Query 3101 TTAGAGGAGGCCACAAGGAGAGGAGAG-ACTCTGATACTAAAGAACCAAACTCATCCATA 3159
||||||||||||||||||||| ||| | | ||||||| ||||||||||||||||||||||
Sbjct 3146 TTAGAGGAGGCCACAAGGAGATGAG-GCAGTCTGATATTAAAGAACCAAACTCATCCATA 3204
Query 3160 TGGTATCACGCAAGCGATTCTCAGGTTCGACCGGCTTCTTTGGAAGAAGTTCTCCGTTCT 3219
||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||
Sbjct 3205 TGGTATCACGCAAGCGATTCTTTTGTTCGACGGGCTTCTTTGGAAGAAGTTCTCCGTTCT 3264
Query 3220 GAAGCCTATATCTTATTTTACGAACGAATCTGA 3252
||||| |||||||||||||||||||||||||||
Sbjct 3265 GAAGCGTATATCTTATTTTACGAACGAATCTGA 3297
Score = 1624 bits (879), Expect = 0.0
Identities = 1106/1212 (91%), Gaps = 29/1212 (2%)
Strand=Plus/Plus
Query 28 AAGCAATCTGAGCAAAGCGTGGAAGTAACTGAGGAGTTTGCTGTGACAATGACAGAAAAA 87
|||||||||||||| |||||||| |||||||||||| | ||||||| || | ||||||
Sbjct 76 AAGCAATCTGAGCACAGCGTGGAGGTAACTGAGGAG---GTTGTGACAGTGCCGGAAAAA 132
Query 88 AGATCTTGTGTCCATTTTGATAAATATGTTGATTTGGATAAGTTGTTGAAAATTATCAAA 147
||||||||||||||||||||||||| |||||||||||||||| ||||||||| || |||
Sbjct 133 AGATCTTGTGTCCATTTTGATAAATTTGTTGATTTGGATAAGCTGTTGAAAAAGATTAAA 192
Query 148 TCTTATCAACAAATCAAGTGTGGAGAATGCAATGAAAGAGTTCACGTGAAGAGAGGAAGT 207
|| | ||||||||||||||||||||||||||| ||| |||| ||||||||||||||||||
Sbjct 193 TCCTCTCAACAAATCAAGTGTGGAGAATGCAAGGAAGGAGTGCACGTGAAGAGAGGAAGT 252
Query 208 AGATG-GGGTGCTAGTAACAGGAGAGACTGGTATTCTTCCTCTGACCAGAATTGTGCTAG 266
| | | | || ||||| | ||| | |||||| |||||| ||||||||||| |||||||
Sbjct 253 A-AAGCGAGTATTAGTAGCGGGATATACTGGTTTTCTTCTTCTGACCAGAAGTGTGCTAA 311
Query 267 AAATGCTATTTGGCTTTGTTTGGAATGTGGCTATTATGTTTGTGGAGATGTTGGTTTGCC 326
||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 312 AAAGGCTATTTGGGTTTGTTTGGAATGTGGCTATTATGTTTGTGGAGATGTTGGTTTACC 371
Query 327 GACTGAGGCTCAGAGTCATGTTATGGGGCA-TAACAGGTTGACGCGTCACCGTTTGGTGA 385
||||| ||||||||||||||||||| |||| | ||||||||||||||||||||||||||
Sbjct 372 GACTGGGGCTCAGAGTCATGTTATGCGGCACT-TCAGGTTGACGCGTCACCGTTTGGTGA 430
Query 386 TTCAATGTAAAAATCCTCAGTTAAGGTGGTGTTTCTCATGCCAATCACTTCTCCCTTTTG 445
|||||||| |||||||||||||||| |||||||||||||||||||||||| |||||||||
Sbjct 431 TTCAATGTGAAAATCCTCAGTTAAGATGGTGTTTCTCATGCCAATCACTTGTCCCTTTTG 490
Query 446 ATAATGAAGAGAATGGTGAGAAAAAAGATTTGTTGCTGGAAGTTGTGAAATTGATTAGAG 505
| || ||||||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 491 AAAAAGAAGAGAATGGTGAGAAGAAAGATTTGTTGCTGGAAGTCGTGAAATTGATTAGAG 550
Query 506 AAAGATCTCCAAACACGTACTCTGCTTCATTTGAAACTGAATTTTCATGTTCAGGAA--- 562
|| ||||||||||||||| ||| ||||||||||||||||||| ||||||||||||||
Sbjct 551 AACGATCTCCAAACACGTTCTCCGCTTCATTTGAAACTGAATATTCATGTTCAGGAAGTG 610
Query 563 G---TAT--C-----------T-A-TGGTGGTATAGAAGCAAGAGATGGTTATGCTGTAA 604
| ||| | | | |||||||||||||||||||||||||||||||||||
Sbjct 611 GTAATATCACTGGTGGTAGTTTCACTGGTGGTATAGAAGCAAGAGATGGTTATGCTGTAA 670
Query 605 GAGGTTTAGTTAACCTTGGGAACACATGTTTCTTTAATTCTGTAATGCAGAACCTTCTCT 664
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 671 GAGGTTTAGTTAACCTTGGGAACACATGTTTCTTTAATTCTGTAATGCAGAGCCTTCTCT 730
Query 665 CTTTGGATCAATTACGTGAGCACTTCTTGAAAGAGGATCTATCTGTTAGCGGGCCTCTCG 724
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 731 CTTTGGATCAATTACGTGAGCACTTCTTGAAAGATGATCTATCTGTTAGCGGGCCTCTCG 790
Query 725 TTTCTTCCCTGAAGGAACTATTTGCTGAATCAAATTCAGAGGCAAGCGTTTTTAGGAATG 784
|||||||||||||| || |||||||||||||||| ||||||||| || ||||||||| ||
Sbjct 791 TTTCTTCCCTGAAGAAATTATTTGCTGAATCAAAATCAGAGGCAGGCTTTTTTAGGAGTG 850
Query 785 AGATAAATCCAAGAGACCTTTTCTTTTCTGTCTGTTCTCAGGCTCCCCAATTTAGGGGAT 844
|||||||||||||| ||||||| |||||||||||||||||||||| |||||||||||||
Sbjct 851 CGATAAATCCAAGAGCCCTTTTCGTTTCTGTCTGTTCTCAGGCTCCTCAATTTAGGGGAT 910
Query 845 ATCAGCAGCATGACAGTCATGAGTTGCTAAGATGTTTGTTGGATGGTTTGAGCATTGAAG 904
|||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||
Sbjct 911 ATCAGCAGCATGACAGTCATGAGTTGCTTAGATGTTTGTTGGATGGTCTGAGCATTGAAG 970
Query 905 AATCGAGCCTGAGGAAGAAGCTTGGTGTTTCTGATAGTAATGACAGTTCTACATATCAGA 964
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 971 AATCGAGCCTGAGGAAGAAGTTTGGTGTTTCTGATAGTAATGACAGTTCTACATATCAGA 1030
Query 965 AACCTACTCTCATAGATTCTGTATTTGGAGGTGAAATATCGAGCACTGTTTCTTGTTTAG 1024
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 1031 AACCTACTCTCATAGATTCTGTATTTGGAGGTGAAATTTCGAGCACTGTTTCTTGTTTGG 1090
Query 1025 AATGCGGACATTTCTCAAAAGTGTATGAACCCTTTATGGATCTCTCTTTACCCGTTCCGT 1084
|||||| ||||||||||||||||||||||||||| |||||||||||||||| ||||||
Sbjct 1091 CATGCGGGCATTTCTCAAAAGTGTATGAACCCTTTTTGGATCTCTCTTTACCTATTCCGT 1150
Query 1085 CCATGAAACTTCCTCCTAAAAAGCAACAAATCCTTTCTCAGGCAAAGGAGGTCCTTAAGA 1144
||| ||||||||||||||||||||||| ||| |||||| ||||||||||||||||||||
Sbjct 1151 CCAAGAAACTTCCTCCTAAAAAGCAACGAATTGTTTCTCTGGCAAAGGAGGTCCTTAAGA 1210
Query 1145 ATGGGGCAGTCAGCAAAGATTCAGAAGTTGTGTCCGCTAAACCTGCATCGGATCACAATT 1204
||||||||||| |||||||||||||||||| ||| |||||||||||||||||||||||||
Sbjct 1211 ATGGGGCAGTCGGCAAAGATTCAGAAGTTGGGTCAGCTAAACCTGCATCGGATCACAATT 1270
Query 1205 CCACAGTT-CCA 1215
||| ||| |||
Sbjct 1271 TCACTGTTTCCA 1282
Score = 643 bits (348), Expect = 0.0
Identities = 481/543 (89%), Gaps = 18/543 (3%)
Strand=Plus/Plus
Query 1627 GAAGCTTCCTCGTCATTCGTGAGCGGTGACCATGAACCaaaaaaaGACTATTTTGACTTT 1686
||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||
Sbjct 1864 GAAGCTTCCTCGTCATTCGTGAGCGGTGACCATGAACCAAAAATAGACTATATTGACTTT 1923
Query 1687 AGCAGTTTTCTTGATGAGCCTGAGATACGCGAAGGACCTGTTTTTAGACCACTATCTAAA 1746
||||||||| |||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 1924 AGCAGTTTTTTTGATGAGCCTGAGATACCCGAAGGACCTGTTTTTAGACTGCTATCTAAA 1983
Query 1747 TCTGAAGTTTATGAAGCTGGTTTTAAGGCTGACTGCAGTGATGATAAAACAGTTAGTGCA 1806
||||||||| |||||||||||||| ||||||| ||||| ||||||||||||||||||||
Sbjct 1984 GCTGAAGTTTCTGAAGCTGGTTTTATGGCTGACAGCAGTAATGATAAAACAGTTAGTGCA 2043
Query 1807 GGTAAGGGTGAAGCTTCCTCGTCATTCATAAGTAGTGACCATGAACAAAACATAGATTAT 1866
||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||
Sbjct 2044 GGTAAGGGTGAAGCTTCCTCGTCATTCGTAAGCAGTGACCATGAACAAAACATAGATTAT 2103
Query 1867 GTTGACTTTAGC-AGtttttttGACGAGCCTGAGATATCCGAAAGACCTT-TCTTTCGAC 1924
|| |||||| || |||||||||||||||||||| ||||| ||| | |||| | |||||||
Sbjct 2104 GTGGACTTT-GCCAGTTTTTTTGACGAGCCTGAAATATCGGAAGGGCCTTAT-TTTCGAC 2161
Query 1925 CGCTATCTAAATCTGAAGTTTCTGAAGCTGGTTTTAAGGCTGACTGCAGTGATGATAAAA 1984
| ||||||||||||||||||||||||||||||||| ||| | | ||||| |||||||||
Sbjct 2162 CATTATCTAAATCTGAAGTTTCTGAAGCTGGTTTTATGGCCGTCAGCAGTAATGATAAAA 2221
Query 1985 CAGTTAGTGCAGGTAAGGGTGAAGCTTCCTCGTCATTCGT-AAGCAGTGACCATGAACA- 2042
||||||| ||||||||||||||| ||| ||||||||| | || | ||||| ||||| |
Sbjct 2222 CAGTTAGGGCAGGTAAGGGTGAAACTTTTTCGTCATTCATGAA-CGGTGACAATGAA-AG 2279
Query 2043 AAACATAGATTATGT-TGACT-TTAGCAGttt-ttttGATGAGCC-TGAGATATCCGAAA 2098
|||||||||||||| | || ||| |||||| |||| | || || ||||| ||| ||||
Sbjct 2280 AAACATAGATTATGAAT--CTATTAACAGTTTATTTT-ACGA-CCGTGAGACATCTGAAA 2335
Query 2099 GACCT-TTCTTTCGACCGCTATCTAAATCTGAAGTTTCTGAAGCAGGTTTTATGGCTGTC 2157
||||| || ||| |||| | ||||||| || ||||||||||||| ||||||||||||||
Sbjct 2336 GACCTGTT-TTTGGACCACCATCTAAAGCTAAAGTTTCTGAAGCTTGTTTTATGGCTGTC 2394
Query 2158 AGC 2160
|||
Sbjct 2395 AGC 2397
Score = 468 bits (253), Expect = 1e-130
Identities = 330/366 (90%), Gaps = 10/366 (3%)
Strand=Plus/Plus
Query 1273 GATTTGGTTTTGCTAAGCGATGTTAGTGATACTGCCCCATCAACCGAGGCTAAAGGAGTT 1332
||||||| |||||| | |||||||||||||| |||||||||||| ||||||||||||||
Sbjct 1375 GATTTGGACTTGCTAGGTGATGTTAGTGATACCGCCCCATCAACCAAGGCTAAAGGAGTT 1434
Query 1333 AATCAGATTTTGGTAGGTAGCACAGAAACGCTGATGCATGATAATGATCG-AACTG---G 1388
||||||| |||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct 1435 AATCAGACTTTGGTAGGTAGCACAGAAACGCTGATGCATGATAATGAT-GTAACTGCAAA 1493
Query 1389 A--A-AAACTGTACCAGATAAAGAAG-ATGTACGAGCTACGCAGTCTAATGAAGAAACAT 1444
| | ||||||||||||||||||||| || |||||||||||| ||||||||||| ||||
Sbjct 1494 ACCAGAAACTGTACCAGATAAAGAAGAAT-CACGAGCTACGCAATCTAATGAAGACACAT 1552
Query 1445 CTGCAAGTGGGATTTCAGCAGTGATAGATGAGGCTCAAGTTTGCGGTTGTCCTGATTTAG 1504
|||||||||||||||| ||||||||||||||||||||||||| | ||| ||||||||| |
Sbjct 1553 CTGCAAGTGGGATTTCCGCAGTGATAGATGAGGCTCAAGTTTTCCGTTCTCCTGATTTTG 1612
Query 1505 AGCAAAGTTCTTCATCTGCAAATCAGGGGGCTGATGAAGAGCTTGCCTTGATGGTTGCAG 1564
|| ||||||||||||||||||||||| ||||||||||||||||| ||||||||||| |||
Sbjct 1613 AGAAAAGTTCTTCATCTGCAAATCAGTGGGCTGATGAAGAGCTTCCCTTGATGGTTCCAG 1672
Query 1565 ATTCTCAGGTTCTGTATATGCCTTATAAAGATCACTTATTCTATGATGATTATATGGTTG 1624
||||||||||||||||||||||||| |||||||| |||| |||||||||| ||| ||||
Sbjct 1673 ATTCTCAGGTTCTGTATATGCCTTACAAAGATCATTTATCCTATGATGATAATACAGTTG 1732
Query 1625 CAGAAG 1630
||||||
Sbjct 1733 CAGAAG 1738
> Ahg470470 jgi|Araly1|470470|fgenesh2_kg.1__424__AT1G04860.1
Length=3288
Score = 320 bits (173), Expect = 4e-86
Identities = 432/553 (78%), Gaps = 34/553 (6%)
Strand=Plus/Plus
Query 572 GTGGTATAGAAGCAAGAGATGGTTATGCTGTAAGAGGTTTAGTTAACCTTGGGAACACAT 631
||| ||||||||||||||| ||||||| ||| |||||||||||||||||||||||||||
Sbjct 900 GTGATATAGAAGCAAGAGAGGGTTATGTTGTGCGAGGTTTAGTTAACCTTGGGAACACAT 959
Query 632 GTTTCTTTAATTCTG-TAATGCAGAACCTTCTCTCTTTGGATCAATTACGTGAGCACTTC 690
||||||||||||| | |||||||||| ||||| |||||||||| ||||| || || |||
Sbjct 960 GTTTCTTTAATTC-GATAATGCAGAATCTTCTTTCTTTGGATCGGTTACGCGATCATTTC 1018
Query 691 TTGAAAGAGGATCTATCTGTTAGC-GG--G-CCTCTCGTTTCTTCCCTGAAGGAACT-AT 745
||||| ||| || |||| || || | ||||| | |||||||||| |||| | ||
Sbjct 1019 TTGAAGGAGAATGGGTCTGGG-GCCGGTAGGCCTCTTGCGTCTTCCCTGA-GGAAATTAT 1076
Query 746 TTGCTGAATC-AAATTCAGAGGCAAGCGTTTTTAGGAATGAGATAAATCCAAGAG-ACCT 803
| |||||| | ||| |||||||| || || || | || ||||||||| |||| | |
Sbjct 1077 TCGCTGAAACGAAAC-CAGAGGCAGGC-TTGA-AG-AGTGTGATAAATCCTAGAGTATTT 1132
Query 804 TTTCTTTTCTGTCTGTTCTCAGGCTCCCCAATTTAGGGGATATCAGCAGCATGACAGTCA 863
||| | || |||||||| |||| || || ||| | |||||| | |||||||| || ||
Sbjct 1133 TTTGGGT-CTTTCTGTTCTAAGGCACCTCAGTTTCGTGGATATGACCAGCATGATAGCCA 1191
Query 864 TGAGTTGCTAAGATGTTTGTTGGATG-GTTTGAGCATTGAAGAATCGAGCCT-GAGGAAG 921
||||||||| | |||||| | |||| ||| |||| ||||||||| || | ||| |||
Sbjct 1192 CGAGTTGCTACGCTGTTTGCTAGATGCGTTA-AGCACCGAAGAATCG-GCTTTGAGAAAG 1249
Query 922 AAGCTTGGTGTTTCTGATAGTAATGACAGTTCTACATATCAGAAACCTACTCTCATAGAT 981
|||| |||||||||||||| | ||| | | |||| | | ||||||| |||||
Sbjct 1250 AAGCATGGTGTTTCTGATAATGGTGAGA-----A-ATAT-A----C-TACTCTCGTAGAT 1297
Query 982 TCTGTATTTGGAGGTGAAATATCGAGCACTGTTTC-TTGTTTAGAATGCGGACATTTCTC 1040
|||||||||||||| |||| ||||||| |||| | |||| | || ||||| |||| |||
Sbjct 1298 TCTGTATTTGGAGGGGAAACGTCGAGCATTGTT-CGTTGTATGGAGTGCGGGCATTCCTC 1356
Query 1041 AAAAGTGTATGAACCCTTTATGGATCTCTCTTTACCCGTTCCGTCCATGAAACTTCCTCC 1100
||||| ||||| || ||| |||||||||| |||||||| || | || |||| |||||
Sbjct 1357 CAAAGTCTATGAGCCATTTTTGGATCTCTCCTTACCCGTACCATTCAAGAAAAGCCCTCC 1416
Query 1101 TAAAAAGCAACAA 1113
|||||||| ||||
Sbjct 1417 TAAAAAGCCACAA 1429
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 122735672925
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5