BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G32785.1

Length=216
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg933851 jgi|Araly1|933851|scaffold_401839.1                        307    2e-83


> Ahg933851 jgi|Araly1|933851|scaffold_401839.1
Length=259

 Score =  307 bits (166),  Expect = 2e-83
 Identities = 198/214 (93%), Gaps = 0/214 (0%)
 Strand=Plus/Plus

Query  1    ATGGCGATGTTGAAGGCAATATCGGTTTTATGTGTCGCTCTACTGATTATTTTTGTTGTT  60
            |||||||||||||||  |||||||||||||| | |||||||||| |||||||||||| ||
Sbjct  21   ATGGCGATGTTGAAGAAAATATCGGTTTTATATCTCGCTCTACTAATTATTTTTGTTTTT  80

Query  61   AAGGCGGATACAATCAACAGGGAGCAAGTTATATCATATGAGTCAATGCGTGTGAATCAT  120
             ||||| |||||||||| | ||||||||||||||||||||| || |||||||||||||||
Sbjct  81   GAGGCGAATACAATCAAAATGGAGCAAGTTATATCATATGATTCTATGCGTGTGAATCAT  140

Query  121  GCATGGGGATGTTCTCAAAAATATCCTCAGTTTTGCCAGAAAACTAGGGCAAATCCATAT  180
            |||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||
Sbjct  141  GCATGGGGATGTTCTCAAAAATATCCTCAGTTTTGTGAGAAAACTAGGGCAAATCCATAT  200

Query  181  ACGAAGCCACCCCCAAAAAACAGTGAAGCTTCAT  214
            |||||||||  |||||||||||||||||||||||
Sbjct  201  ACGAAGCCAAACCCAAAAAACAGTGAAGCTTCAT  234



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 7370334373


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5