BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G32788.1 Length=195 Score E Sequences producing significant alignments: (Bits) Value Ahg482222 jgi|Araly1|482222|fgenesh2_kg.4__1282__AT2G32788.1 300 3e-81 Ahg933856 jgi|Araly1|933856|scaffold_401844.1 263 3e-70 > Ahg482222 jgi|Araly1|482222|fgenesh2_kg.4__1282__AT2G32788.1 Length=195 Score = 300 bits (162), Expect = 3e-81 Identities = 184/195 (94%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 1 ATGGGTATCTCTAAGAAATCAACAAAGGCTATAATAATATATATGGCTCTTATTATGGTG 60 |||||||| |||||||||| || ||| ||||| || |||||||||||||||||||||||| Sbjct 1 ATGGGTATGTCTAAGAAATTAATAAAAGCTATTATTATATATATGGCTCTTATTATGGTG 60 Query 61 TTCTTCACATTTGCAACACTCAAGACCAATGCGGAAGATGTGATAAGCTACGAAGTTCTC 120 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 61 TTCTTCACATTTGCAACACTCAAGACCAATGCGGAAGATGTGATAAGCTACGAAGCTCTC 120 Query 121 TTACAAGATCATGCATGGGGATGTAGTCCAAAGTTTCCTAGATTATCATGTCTCAAACAA 180 |||||||||||||||||||||||||||||||| |||||||||||| |||||||||||| Sbjct 121 AAACAAGATCATGCATGGGGATGTAGTCCAAAGTATCCTAGATTATCTTGTCTCAAACAA 180 Query 181 AAGGCCAATCCCTAG 195 ||||||||||||||| Sbjct 181 AAGGCCAATCCCTAG 195 > Ahg933856 jgi|Araly1|933856|scaffold_401844.1 Length=234 Score = 263 bits (142), Expect = 3e-70 Identities = 178/195 (91%), Gaps = 3/195 (2%) Strand=Plus/Plus Query 1 ATGGGTATCTCTAAGAAATCAACAAAGGCTATAATAATATATATGGCTCTTATTATGGTG 60 |||||||| |||| ||||| || |||||||| ||||||||| |||||||||| ||||| Sbjct 22 ATGGGTATGTCTACGAAATTAATGAAGGCTATTATAATATATGTGGCTCTTATAATGGTA 81 Query 61 TTCTTCACATTTGCAACACTCAAGACCAATGCGGAAGATGTGATAAGCTACGAAGTTCTC 120 |||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||| Sbjct 82 TTCTTCACATTTGCAACACTCAAGACCAATGCAGAAGATGTGATAAGCTACGAAGCTCTC 141 Query 121 TTACAAGATCATGCATGGGGATGTAGTCCAAAGTTTCCTAGATTATCATGTCTCAAACAA 180 |||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| Sbjct 142 AAACAAGATCATGCATGGGGATGTAGTCCAAAGTATCCTAGATTAT---GTCTCAAACAA 198 Query 181 AAGGCCAATCCCTAG 195 ||||||||||||||| Sbjct 199 AAGGCCAATCCCTAG 213 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 6568380892 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5