BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G32788.1
Length=195
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482222 jgi|Araly1|482222|fgenesh2_kg.4__1282__AT2G32788.1 300 3e-81
Ahg933856 jgi|Araly1|933856|scaffold_401844.1 263 3e-70
> Ahg482222 jgi|Araly1|482222|fgenesh2_kg.4__1282__AT2G32788.1
Length=195
Score = 300 bits (162), Expect = 3e-81
Identities = 184/195 (94%), Gaps = 0/195 (0%)
Strand=Plus/Plus
Query 1 ATGGGTATCTCTAAGAAATCAACAAAGGCTATAATAATATATATGGCTCTTATTATGGTG 60
|||||||| |||||||||| || ||| ||||| || ||||||||||||||||||||||||
Sbjct 1 ATGGGTATGTCTAAGAAATTAATAAAAGCTATTATTATATATATGGCTCTTATTATGGTG 60
Query 61 TTCTTCACATTTGCAACACTCAAGACCAATGCGGAAGATGTGATAAGCTACGAAGTTCTC 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 61 TTCTTCACATTTGCAACACTCAAGACCAATGCGGAAGATGTGATAAGCTACGAAGCTCTC 120
Query 121 TTACAAGATCATGCATGGGGATGTAGTCCAAAGTTTCCTAGATTATCATGTCTCAAACAA 180
|||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||
Sbjct 121 AAACAAGATCATGCATGGGGATGTAGTCCAAAGTATCCTAGATTATCTTGTCTCAAACAA 180
Query 181 AAGGCCAATCCCTAG 195
|||||||||||||||
Sbjct 181 AAGGCCAATCCCTAG 195
> Ahg933856 jgi|Araly1|933856|scaffold_401844.1
Length=234
Score = 263 bits (142), Expect = 3e-70
Identities = 178/195 (91%), Gaps = 3/195 (2%)
Strand=Plus/Plus
Query 1 ATGGGTATCTCTAAGAAATCAACAAAGGCTATAATAATATATATGGCTCTTATTATGGTG 60
|||||||| |||| ||||| || |||||||| ||||||||| |||||||||| |||||
Sbjct 22 ATGGGTATGTCTACGAAATTAATGAAGGCTATTATAATATATGTGGCTCTTATAATGGTA 81
Query 61 TTCTTCACATTTGCAACACTCAAGACCAATGCGGAAGATGTGATAAGCTACGAAGTTCTC 120
|||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||
Sbjct 82 TTCTTCACATTTGCAACACTCAAGACCAATGCAGAAGATGTGATAAGCTACGAAGCTCTC 141
Query 121 TTACAAGATCATGCATGGGGATGTAGTCCAAAGTTTCCTAGATTATCATGTCTCAAACAA 180
|||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 142 AAACAAGATCATGCATGGGGATGTAGTCCAAAGTATCCTAGATTAT---GTCTCAAACAA 198
Query 181 AAGGCCAATCCCTAG 195
|||||||||||||||
Sbjct 199 AAGGCCAATCCCTAG 213
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 6568380892
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5