BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G32820.1
Length=1163
Score E
Sequences producing significant alignments: (Bits) Value
Ahg933860 jgi|Araly1|933860|scaffold_401848.1 1123 0.0
> Ahg933860 jgi|Araly1|933860|scaffold_401848.1
Length=1051
Score = 1123 bits (608), Expect = 0.0
Identities = 883/1011 (87%), Gaps = 37/1011 (4%)
Strand=Plus/Plus
Query 3 CAGATCTTCCTCGTTTGGTATCTACTGCAATTAGAGCTTCTAATTCGCAGAATGCTTCTG 62
||||||||||||||||||||||| ||||||||||||||||| |||||||||||| |||||
Sbjct 55 CAGATCTTCCTCGTTTGGTATCTGCTGCAATTAGAGCTTCTGATTCGCAGAATGTTTCTG 114
Query 63 ATGTTGAACGTTGCTTTGATGTTCTTCGATACTTGAAGGGTTTGAATCTCTCTGTCAAAA 122
|| |||||||||||||||||||||||||| || ||||| ||||||||||||| ||||||
Sbjct 115 ATTTTGAACGTTGCTTTGATGTTCTTCGACACATGAAGAGTTTGAATCTCTCGGTCAAAG 174
Query 123 ATCTTTCCCATTCCAAAGTGATACTTCCCTTGGAGAGTCTGAGAGATCACGAAAACCCTA 182
||||||||||||| |||||||||||||| ||||||||||| || |||||||| |||||||
Sbjct 175 ATCTTTCCCATTCTAAAGTGATACTTCCTTTGGAGAGTCTAAGGGATCACGACAACCCTA 234
Query 183 AGATACGAACGGAAGCTCACGTCTTGTTC-ACTTCATGGATGAAGACTTTTTACTCCAGC 241
||||||||| |||| || || | |||||| || || |||||||||||| |||| |||||
Sbjct 235 AGATACGAATGGAAACTAACTTATTGTTCAAC-TCTTGGATGAAGACTCTTTATTCCAGT 293
Query 242 GGACAAAACTCTTCTTCTACTTGCAACAAACCTAATCCCCTGAAACTGAAG-AA----A- 295
|||| ||| | |||||||||||||||||| ||| |||||||||||||||| || |
Sbjct 294 GGACGAAA--C-TCTTCTACTTGCAACAAAGCTATTCCCCTGAAACTGAAGAAAGTTGAT 350
Query 296 GTTGTTAAAGCGTGTTCGGAGTTGAAGAAGAAGAACGAAGAGCAACTATCTCATGGTTTT 355
|||||||||| |||||||||||||||||||||||| ||||| || ||||||||||| |||
Sbjct 351 GTTGTTAAAGTGTGTTCGGAGTTGAAGAAGAAGAAAGAAGATCAGCTATCTCATGGCTTT 410
Query 356 GCGG-TACT--TAAGGCTAAGAAAGAGACT-GtttttttGGGGATGAAGAAGAACGAAGA 411
|||| || | ||| ||| |||||||||| |||||| | ||||||||||||||||||||
Sbjct 411 GCGGTTAATAGTAA-GCT--GAAAGAGACTGGTTTTTGT-GGGATGAAGAAGAACGAAGA 466
Query 412 TGAGAGATCTAGGGTTCATGAAACCAGAGAGATGAAACAAATTGGTGATTCCAAGTCTTT 471
|||||| |||||| ||||||||||| ||||| ||| ||||| |||||||| |||||||||
Sbjct 467 TGAGAGTTCTAGGATTCATGAAACCGGAGAGGTGAGACAAACTGGTGATTGCAAGTCTTT 526
Query 472 TGCATTGATGAGGACTATCGAGAAGAAGAAGC-A--ATCGGCCTC-ACCAATTCAAGGTT 527
|| |||||||||||||||| |||||||||||| | ||||| ||| |||||| ||| ||
Sbjct 527 TGGATTGATGAGGACTATCCAGAAGAAGAAGCAATCATCGG-CTCTACCAATGAAAGTTT 585
Query 528 CTAAAAACCCTAGATCCGGGGCGGGTGAAACGGGAGTGATTAAGAAAATTTTGAGGAAGC 587
|| ||||||||| |||||||| |||||||| ||||||||||||| |||||| ||| |
Sbjct 586 CTGGAAACCCTAGCTCCGGGGCTCGTGAAACGATAGTGATTAAGAAATTTTTGAAGAAAC 645
Query 588 CTGACTTTTGCTGCAAGTCTGTT----C--CATCAAGGCCTCCTCTCAACATGAAGAAGC 641
||||| ||| ||||||||| || | ||||||||||||||||||| |||||||||
Sbjct 646 CTGAC-TTT--TGCAAGTCTCTTCCACCAACATCAAGGCCTCCTCTCAAGTTGAAGAAGC 702
Query 642 ATCAACCGGTGAAAGCATTTGAAAACCCTAAAACTTGT-CTTGTGTTGAAGAAGAACTCA 700
|||||||||||||||||||||||||| |||||| |||| ||| || | |||| |||||||
Sbjct 703 ATCAACCGGTGAAAGCATTTGAAAACTCTAAAAATTGTCCTTTTG-TCAAGACGAACTCA 761
Query 701 CCGGAGATGTTGGAGCTATTCGAGATGGCCAAGAAGTCAGCAGATGTTGCCAATGCCAAG 760
|||||||||||||||| ||||| ||||||||||||||||| |||||||||||||| |||
Sbjct 762 ACGGAGATGTTGGAGCTGTTCGATATGGCCAAGAAGTCAGCTGATGTTGCCAATGCAAAG 821
Query 761 GGATTTCTCGCAGCTAAAGAAGAGGCATCAATATGCGTCGACA-TACTCGCTTTACTCAT 819
||| ||||||| |||||||||||||||||||| ||||| |||| | ||| ||||||||||
Sbjct 822 GGAATTCTCGCGGCTAAAGAAGAGGCATCAATCTGCGTAGACACT-CTCTCTTTACTCAT 880
Query 820 GAAATTTTCCATCATCTCAACGGCTATTGAAACAAGACGGATCATGGAAAAGCTTGAGCG 879
| |||| ||||||||||||| |||| ||||||||| | ||||||| |||||||||||
Sbjct 881 GGAATTCCCCATCATCTCAACAGCTACTGAAACAAGGCAAATCATGGTGAAGCTTGAGCG 940
Query 880 TCTCACAAAGCACAAAGATAGAAAGATATGCAATGCTGCATTAGCACTTCTCCACCATTG 939
|||||||||||||||||||||||||||||||||| | |||||||||||||| ||||||||
Sbjct 941 TCTCACAAAGCACAAAGATAGAAAGATATGCAATTCCGCATTAGCACTTCTTCACCATTG 1000
Query 940 GAGGCAGACCATTAGAAATCAACAACAATGAGTAGTGTCATCAGAGAATCT 990
|||||||| ||||||| ||||| |||| ||||||||||||||||| |||||
Sbjct 1001 GAGGCAGAACATTAGAGATCAAGAACACTGAGTAGTGTCATCAGATAATCT 1051
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43383879546
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5