BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G32830.1
Length=1740
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482224 jgi|Araly1|482224|fgenesh2_kg.4__1284__AT2G32830.1 2601 0.0
> Ahg482224 jgi|Araly1|482224|fgenesh2_kg.4__1284__AT2G32830.1
Length=1716
Score = 2601 bits (1408), Expect = 0.0
Identities = 1619/1721 (94%), Gaps = 13/1721 (1%)
Strand=Plus/Plus
Query 25 TTCTCTCAGGTGACTGAACAACAG-AGAAAAACATGGCGAAAAAAGGAAAAGAAGTGTTG 83
||||||||||||| | |||||||| | ||||| ||||||| ||||| |||||||||||
Sbjct 1 TTCTCTCAGGTGAGTAAACAACAGAAAAAAAAAATGGCGAGGAAAGGGAAAGAAGTGTTA 60
Query 84 AACGCTTTGGACGCAGCCAAAACGCAGATGTACCATTTCACAGCGATTGTAATCGCGGGT 143
|||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 61 AACGCTTTGGACGCGGCCAAAACGCAGATGTACTATTTCACAGCGATTGTAATCGCGGGT 120
Query 144 ATGGGTTTTTTCACTGATGCTTACGATCTATTT-AGCATCTCCCTCGTCACGAAGCTCCT 202
||||||||||||||||||||||||||||| ||| |||||||| |||||||| ||||||||
Sbjct 121 ATGGGTTTTTTCACTGATGCTTACGATCT-TTTCAGCATCTCTCTCGTCACCAAGCTCCT 179
Query 203 AGGCCGCATATACTACCACGTTGATAGCTCCAAGAAGCCTGGAACGCTCCCTCCTAATGT 262
|||||||||||||||||||||||| ||||||||||||||||||||||||| || |||||
Sbjct 180 CGGCCGCATATACTACCACGTTGATGGCTCCAAGAAGCCTGGAACGCTCCCCCCAAATGT 239
Query 263 TGCTGCCGCTGTTAATGGTGTGGCCTTCTGCGGTACCTTAGCAGGCCAGCTCTTCTTCGG 322
|||||||||||||||||||||||| |||||||| ||| | || |||||||||||||||||
Sbjct 240 TGCTGCCGCTGTTAATGGTGTGGCTTTCTGCGGGACCCTCGCTGGCCAGCTCTTCTTCGG 299
Query 323 TTGGCTCGGTGACAAGCTCGGCCGCAAGAAAGTTTACGGTATTACCTTGATGCTCATGGT 382
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 300 TTGGCTCGGTGACAAGCTCGGCCGCAAGAAAGTTTACGGTATTACCTTGATGGTCATGGT 359
Query 383 ACTATGTTCTCTCGGGTCTGGTCTATCATTTGGTCACTCAGCTAACGGAGTAATGGCCAC 442
||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 360 ACTATGTTCACTCGGGTCTGGTCTATCATTCGGTCACTCAGCTAACGGAGTAATGGCCAC 419
Query 443 ACTTTGTTTCTTCCGGTTCTGGCTCGGTTTCGGCATAGGCGGCGACTACCCTCTCTCAGC 502
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 420 ACTTTGTTTCTTCCGGTTCTGGCTTGGTTTCGGCATAGGCGGCGACTACCCTCTCTCCGC 479
Query 503 CACCATCATGTCGGAATACGCCAACAAGAAAACACGTGGCGCCTTCATAGCAGCCGTCTT 562
||| |||||||| ||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 480 CACTATCATGTCAGAATACGCCAACAAGAAGACACGTGGCGCGTTCATAGCAGCCGTCTT 539
Query 563 CGCTATGCAAGGCTTCGGAATCTTAGCCGGAGGAATCGTGTCTCTCATCGTCTCGAGTAC 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 540 TGCTATGCAAGGCTTCGGAATCTTAGCCGGAGGAATCGTGTCTCTCATCGTCTCGAGTGC 599
Query 623 ATTTGACCATGCCTTCAAAGCGCCCACCTACGAGGTTGATCCTGTTGGCTCCACTGTTCC 682
||| |||||||| ||| | || ||||||||||| |||||||| ||||| |||||||||||
Sbjct 600 ATTCGACCATGCTTTCGACGCACCCACCTACGAAGTTGATCCGGTTGGGTCCACTGTTCC 659
Query 683 TCAAGCGGATTACGTGTGGCGGATTGTGCTCATGTTTGGAGCTATCCCAGCTTTACTTAC 742
||| ||||||||||||||||||||||||||||||||||||||||| || || ||||||||
Sbjct 660 TCAGGCGGATTACGTGTGGCGGATTGTGCTCATGTTTGGAGCTATTCCGGCGTTACTTAC 719
Query 743 TTATTATTGGCGGATGAAAATGCCGGAAACTGCTCGGTATACCGCTCTTGTAGCTCGGAA 802
|||||||||||||||||| |||||||||||||||||||||||||||||||| || |||||
Sbjct 720 TTATTATTGGCGGATGAAGATGCCGGAAACTGCTCGGTATACCGCTCTTGTTGCCCGGAA 779
Query 803 TACCAAACAAGCCGCCTCCGATATGTCTAAGGTGCTTCAAGTGGATCTAATTGCAGAAGA 862
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 TACCAAACAAGCCGCCTCCGATATGTCTAAGGTGCTTCAAGTGGATCTAATTGCAGAAGA 839
Query 863 AGAAGCACAATCAAAT---TCAAATTCATCAAACCCTAATTTCACCTTCGGTTTATTCAC 919
|||||||||| ||||| ||| ||||||||||||||||| | ||||||| |||||| |
Sbjct 840 AGAAGCACAACCAAATCAGTCATCTTCATCAAACCCTAATTCCTCCTTCGGCTTATTCTC 899
Query 920 CAGAGAATTCGCTCGCCGTCACGGTCTCCACCTTCTCGGCACAACCACCACATGGTTCCT 979
|||||||||||||||||||||||| |||||||||||||| ||||||||||| ||||||||
Sbjct 900 CAGAGAATTCGCTCGCCGTCACGGCCTCCACCTTCTCGGAACAACCACCACGTGGTTCCT 959
Query 980 CCTAGACATCGCCTATTACAGCAGCAACCTCTTCCAAAAAGACATCTACACAGCAATCGG 1039
||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 960 CCTCGACATCGCCTATTACAGCAGCAACCTCTTCCAAAAAGACATCTACACCGCAATCGG 1019
Query 1040 ATGGATTCCCGCCGCCGAAACAATGAACGCAATCCACGAAGTCTTCACCGTCTCAAAAGC 1099
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1020 ATGGATTCCCGCCGCCGAAACAATGAACGCAATCCACGAAGTCTTCACCGTCTCCAAAGC 1079
Query 1100 TCAAACCCTAATCGCTCTCTGCGGCACCGTCCCTGGTTACTGGTTCACCGTCGCATTCAT 1159
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1080 TCAAACCCTAATCGCTCTCTGCGGCACCGTCCCTGGTTACTGGTTCACCGTCGCATTCAT 1139
Query 1160 CGATATACTCGGTCGATTCTTCATCCAGTTGATGGGATTTATCTTCATGACGATCTTTAT 1219
||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||
Sbjct 1140 CGATATACTCGGTCGATTCTTCATCCAATTGATGGGATTTATCTTCATGATGATCTTTAT 1199
Query 1220 GTTCGCTTTAGCGATTCCTTATGATCATTGGAGACATAGAGAGAATCGAATTGGTTTTTT 1279
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1200 GTTCGCTTTAGCGATTCCTTATGATCATTGGAGACATAGAGAGAATCGAATTGGTTTTTT 1259
Query 1280 GATTATGTATTCGTTGACTATGTTCTTCGCTAATTTTGGACCTAATGCGACGACGTTTGT 1339
|||||||||||||||||| ||||| ||||| ||||||||||| |||||||||||||||||
Sbjct 1260 GATTATGTATTCGTTGACGATGTTTTTCGCGAATTTTGGACCCAATGCGACGACGTTTGT 1319
Query 1340 TGTTCCTGCTGAGATATTTCCGGCGAGGTTGAGATCGACTTGTCATGGGATATCGGCGGC 1399
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1320 TGTTCCTGCTGAGATATTTCCGGCGAGGTTGAGATCGACTTGTCATGGGATATCGGCGGC 1379
Query 1400 GAGTGGTAAGGCGGGAGCGATTGTTGGAGCGTTTGGGTTTCTTTACGCGGCGCAGAGTTC 1459
||| |||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1380 TTCTGGCAAGGCGGGTGCGATTGTTGGAGCTTTTGGGTTTCTTTACGCGGCGCAGAGTTC 1439
Query 1460 GGATTCGGAGAAGACTGATGCTGGTTATCCTCCTGGGATTGGTGTTAGGAATTCGTTGTT 1519
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1440 GGATTCGGAGAAGACTGATGCTGGTTATCCTCCTGGGATTGGTGTTAGGAATTCGTTGTT 1499
Query 1520 GATGCTTGCTTGTGTTAATTTCTTGGGGATTGTTTTTACTCTGTTGGTTCCGGAGTCTAA 1579
|||||||| | ||||||||||||| |||||||||||||||||||| ||||||||||| ||
Sbjct 1500 GATGCTTGGTGGTGTTAATTTCTTTGGGATTGTTTTTACTCTGTTAGTTCCGGAGTCGAA 1559
Query 1580 AGGGAAGTCTTTGGAAGAGATTTCGAGAGAAGATGAGGAACAAAGCGGCGGAGATACGGT 1639
|||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||
Sbjct 1560 AGGGAAGTCTTTGGAAGAGATTTCGAGAGAAGATGAGGAACAGAGCGGCGGAGATGCGGT 1619
Query 1640 GGTGGAGATGACTGTGGCAAATTCCGGTAGAAAAGTCCCGGTTTGATTATTTTGT-GT-- 1696
|||||||||||||| |||||||||||||||| ||| ||||| ||||| |||| | ||
Sbjct 1620 GGTGGAGATGACTGCAGCAAATTCCGGTAGAACAGTTCCGGTGTGATTCTTTTTTTGTGA 1679
Query 1697 TACTCATTTTGTAAATTTACTCTATATATGAAAGTCCCTTG 1737
||| |||||||||| ||| | |||||||||||||| |||
Sbjct 1680 TACGCATTTTGTAA-TTT--TG-ATATATGAAAGTCCTTTG 1716
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65286679930
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5