BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G32830.1 Length=1740 Score E Sequences producing significant alignments: (Bits) Value Ahg482224 jgi|Araly1|482224|fgenesh2_kg.4__1284__AT2G32830.1 2601 0.0 > Ahg482224 jgi|Araly1|482224|fgenesh2_kg.4__1284__AT2G32830.1 Length=1716 Score = 2601 bits (1408), Expect = 0.0 Identities = 1619/1721 (94%), Gaps = 13/1721 (1%) Strand=Plus/Plus Query 25 TTCTCTCAGGTGACTGAACAACAG-AGAAAAACATGGCGAAAAAAGGAAAAGAAGTGTTG 83 ||||||||||||| | |||||||| | ||||| ||||||| ||||| ||||||||||| Sbjct 1 TTCTCTCAGGTGAGTAAACAACAGAAAAAAAAAATGGCGAGGAAAGGGAAAGAAGTGTTA 60 Query 84 AACGCTTTGGACGCAGCCAAAACGCAGATGTACCATTTCACAGCGATTGTAATCGCGGGT 143 |||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||| Sbjct 61 AACGCTTTGGACGCGGCCAAAACGCAGATGTACTATTTCACAGCGATTGTAATCGCGGGT 120 Query 144 ATGGGTTTTTTCACTGATGCTTACGATCTATTT-AGCATCTCCCTCGTCACGAAGCTCCT 202 ||||||||||||||||||||||||||||| ||| |||||||| |||||||| |||||||| Sbjct 121 ATGGGTTTTTTCACTGATGCTTACGATCT-TTTCAGCATCTCTCTCGTCACCAAGCTCCT 179 Query 203 AGGCCGCATATACTACCACGTTGATAGCTCCAAGAAGCCTGGAACGCTCCCTCCTAATGT 262 |||||||||||||||||||||||| ||||||||||||||||||||||||| || ||||| Sbjct 180 CGGCCGCATATACTACCACGTTGATGGCTCCAAGAAGCCTGGAACGCTCCCCCCAAATGT 239 Query 263 TGCTGCCGCTGTTAATGGTGTGGCCTTCTGCGGTACCTTAGCAGGCCAGCTCTTCTTCGG 322 |||||||||||||||||||||||| |||||||| ||| | || ||||||||||||||||| Sbjct 240 TGCTGCCGCTGTTAATGGTGTGGCTTTCTGCGGGACCCTCGCTGGCCAGCTCTTCTTCGG 299 Query 323 TTGGCTCGGTGACAAGCTCGGCCGCAAGAAAGTTTACGGTATTACCTTGATGCTCATGGT 382 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 300 TTGGCTCGGTGACAAGCTCGGCCGCAAGAAAGTTTACGGTATTACCTTGATGGTCATGGT 359 Query 383 ACTATGTTCTCTCGGGTCTGGTCTATCATTTGGTCACTCAGCTAACGGAGTAATGGCCAC 442 ||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 360 ACTATGTTCACTCGGGTCTGGTCTATCATTCGGTCACTCAGCTAACGGAGTAATGGCCAC 419 Query 443 ACTTTGTTTCTTCCGGTTCTGGCTCGGTTTCGGCATAGGCGGCGACTACCCTCTCTCAGC 502 |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| || Sbjct 420 ACTTTGTTTCTTCCGGTTCTGGCTTGGTTTCGGCATAGGCGGCGACTACCCTCTCTCCGC 479 Query 503 CACCATCATGTCGGAATACGCCAACAAGAAAACACGTGGCGCCTTCATAGCAGCCGTCTT 562 ||| |||||||| ||||||||||||||||| ||||||||||| ||||||||||||||||| Sbjct 480 CACTATCATGTCAGAATACGCCAACAAGAAGACACGTGGCGCGTTCATAGCAGCCGTCTT 539 Query 563 CGCTATGCAAGGCTTCGGAATCTTAGCCGGAGGAATCGTGTCTCTCATCGTCTCGAGTAC 622 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 540 TGCTATGCAAGGCTTCGGAATCTTAGCCGGAGGAATCGTGTCTCTCATCGTCTCGAGTGC 599 Query 623 ATTTGACCATGCCTTCAAAGCGCCCACCTACGAGGTTGATCCTGTTGGCTCCACTGTTCC 682 ||| |||||||| ||| | || ||||||||||| |||||||| ||||| ||||||||||| Sbjct 600 ATTCGACCATGCTTTCGACGCACCCACCTACGAAGTTGATCCGGTTGGGTCCACTGTTCC 659 Query 683 TCAAGCGGATTACGTGTGGCGGATTGTGCTCATGTTTGGAGCTATCCCAGCTTTACTTAC 742 ||| ||||||||||||||||||||||||||||||||||||||||| || || |||||||| Sbjct 660 TCAGGCGGATTACGTGTGGCGGATTGTGCTCATGTTTGGAGCTATTCCGGCGTTACTTAC 719 Query 743 TTATTATTGGCGGATGAAAATGCCGGAAACTGCTCGGTATACCGCTCTTGTAGCTCGGAA 802 |||||||||||||||||| |||||||||||||||||||||||||||||||| || ||||| Sbjct 720 TTATTATTGGCGGATGAAGATGCCGGAAACTGCTCGGTATACCGCTCTTGTTGCCCGGAA 779 Query 803 TACCAAACAAGCCGCCTCCGATATGTCTAAGGTGCTTCAAGTGGATCTAATTGCAGAAGA 862 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 780 TACCAAACAAGCCGCCTCCGATATGTCTAAGGTGCTTCAAGTGGATCTAATTGCAGAAGA 839 Query 863 AGAAGCACAATCAAAT---TCAAATTCATCAAACCCTAATTTCACCTTCGGTTTATTCAC 919 |||||||||| ||||| ||| ||||||||||||||||| | ||||||| |||||| | Sbjct 840 AGAAGCACAACCAAATCAGTCATCTTCATCAAACCCTAATTCCTCCTTCGGCTTATTCTC 899 Query 920 CAGAGAATTCGCTCGCCGTCACGGTCTCCACCTTCTCGGCACAACCACCACATGGTTCCT 979 |||||||||||||||||||||||| |||||||||||||| ||||||||||| |||||||| Sbjct 900 CAGAGAATTCGCTCGCCGTCACGGCCTCCACCTTCTCGGAACAACCACCACGTGGTTCCT 959 Query 980 CCTAGACATCGCCTATTACAGCAGCAACCTCTTCCAAAAAGACATCTACACAGCAATCGG 1039 ||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 960 CCTCGACATCGCCTATTACAGCAGCAACCTCTTCCAAAAAGACATCTACACCGCAATCGG 1019 Query 1040 ATGGATTCCCGCCGCCGAAACAATGAACGCAATCCACGAAGTCTTCACCGTCTCAAAAGC 1099 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 1020 ATGGATTCCCGCCGCCGAAACAATGAACGCAATCCACGAAGTCTTCACCGTCTCCAAAGC 1079 Query 1100 TCAAACCCTAATCGCTCTCTGCGGCACCGTCCCTGGTTACTGGTTCACCGTCGCATTCAT 1159 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1080 TCAAACCCTAATCGCTCTCTGCGGCACCGTCCCTGGTTACTGGTTCACCGTCGCATTCAT 1139 Query 1160 CGATATACTCGGTCGATTCTTCATCCAGTTGATGGGATTTATCTTCATGACGATCTTTAT 1219 ||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||| Sbjct 1140 CGATATACTCGGTCGATTCTTCATCCAATTGATGGGATTTATCTTCATGATGATCTTTAT 1199 Query 1220 GTTCGCTTTAGCGATTCCTTATGATCATTGGAGACATAGAGAGAATCGAATTGGTTTTTT 1279 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1200 GTTCGCTTTAGCGATTCCTTATGATCATTGGAGACATAGAGAGAATCGAATTGGTTTTTT 1259 Query 1280 GATTATGTATTCGTTGACTATGTTCTTCGCTAATTTTGGACCTAATGCGACGACGTTTGT 1339 |||||||||||||||||| ||||| ||||| ||||||||||| ||||||||||||||||| Sbjct 1260 GATTATGTATTCGTTGACGATGTTTTTCGCGAATTTTGGACCCAATGCGACGACGTTTGT 1319 Query 1340 TGTTCCTGCTGAGATATTTCCGGCGAGGTTGAGATCGACTTGTCATGGGATATCGGCGGC 1399 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1320 TGTTCCTGCTGAGATATTTCCGGCGAGGTTGAGATCGACTTGTCATGGGATATCGGCGGC 1379 Query 1400 GAGTGGTAAGGCGGGAGCGATTGTTGGAGCGTTTGGGTTTCTTTACGCGGCGCAGAGTTC 1459 ||| |||||||| |||||||||||||| ||||||||||||||||||||||||||||| Sbjct 1380 TTCTGGCAAGGCGGGTGCGATTGTTGGAGCTTTTGGGTTTCTTTACGCGGCGCAGAGTTC 1439 Query 1460 GGATTCGGAGAAGACTGATGCTGGTTATCCTCCTGGGATTGGTGTTAGGAATTCGTTGTT 1519 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1440 GGATTCGGAGAAGACTGATGCTGGTTATCCTCCTGGGATTGGTGTTAGGAATTCGTTGTT 1499 Query 1520 GATGCTTGCTTGTGTTAATTTCTTGGGGATTGTTTTTACTCTGTTGGTTCCGGAGTCTAA 1579 |||||||| | ||||||||||||| |||||||||||||||||||| ||||||||||| || Sbjct 1500 GATGCTTGGTGGTGTTAATTTCTTTGGGATTGTTTTTACTCTGTTAGTTCCGGAGTCGAA 1559 Query 1580 AGGGAAGTCTTTGGAAGAGATTTCGAGAGAAGATGAGGAACAAAGCGGCGGAGATACGGT 1639 |||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| Sbjct 1560 AGGGAAGTCTTTGGAAGAGATTTCGAGAGAAGATGAGGAACAGAGCGGCGGAGATGCGGT 1619 Query 1640 GGTGGAGATGACTGTGGCAAATTCCGGTAGAAAAGTCCCGGTTTGATTATTTTGT-GT-- 1696 |||||||||||||| |||||||||||||||| ||| ||||| ||||| |||| | || Sbjct 1620 GGTGGAGATGACTGCAGCAAATTCCGGTAGAACAGTTCCGGTGTGATTCTTTTTTTGTGA 1679 Query 1697 TACTCATTTTGTAAATTTACTCTATATATGAAAGTCCCTTG 1737 ||| |||||||||| ||| | |||||||||||||| ||| Sbjct 1680 TACGCATTTTGTAA-TTT--TG-ATATATGAAAGTCCTTTG 1716 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 65286679930 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5