BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G32835.1

Length=288
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg933858 jgi|Araly1|933858|scaffold_401846.1                        335    1e-91
  Ahg925103 jgi|Araly1|925103|scaffold_200664.1                        311    2e-84


> Ahg933858 jgi|Araly1|933858|scaffold_401846.1
Length=308

 Score =  335 bits (181),  Expect = 1e-91
 Identities = 215/231 (93%), Gaps = 3/231 (1%)
 Strand=Plus/Plus

Query  1    ATGGTTGCATACGAGAAGAGTCCTATTGTTTTTCTATTTGCTACAATGATGCTTGTAATG  60
            |||||||||||| |||||||||||||||||||||||||||||||||||||| || |  | 
Sbjct  21   ATGGTTGCATACAAGAAGAGTCCTATTGTTTTTCTATTTGCTACAATGATGATTATCTTA  80

Query  61   TTTTTGTTTTGTGGAAGTGGAGAAGCAAGAACATTAGGGTACGGATCTATTAAAGGAGAC  120
            ||| |||||||||||||||||||| |||||||||||||||||||| |||||||| ||| |
Sbjct  81   TTTATGTTTTGTGGAAGTGGAGAAACAAGAACATTAGGGTACGGAGCTATTAAAAGAGGC  140

Query  121  CGAA-TTCCGGCATGTGGCTATAAAAACCCCAATTCATGTGTCAAACAACCAGTTAACCA  179
            | || ||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct  141  C-AAGTTCCGGCATGTGGCTCTAAAAACCCCAATTCATGTGTCAAACAACCAGTTAACCA  199

Query  180  TTACCATAGAGGTTGTGAAAAAATTACCAGGTGTGCTCGTGATGCTG-CTC  229
            |||||||||||||||||||||| |||||||||||||||||||||||| |||
Sbjct  200  TTACCATAGAGGTTGTGAAAAACTTACCAGGTGTGCTCGTGATGCTGACTC  250


> Ahg925103 jgi|Araly1|925103|scaffold_200664.1
Length=311

 Score =  311 bits (168),  Expect = 2e-84
 Identities = 215/236 (91%), Gaps = 10/236 (4%)
 Strand=Plus/Plus

Query  1    ATGGTTGCATACGA-GAAGAGTCCTATTGTTTTTCTATTTGCTACAATGATGCTTGTAAT  59
            |||||||||||| | ||||||||||||||||||||||||||||||||||||| || || |
Sbjct  22   ATGGTTGCATAC-ATGAAGAGTCCTATTGTTTTTCTATTTGCTACAATGATGATTATATT  80

Query  60   GTTTTTGTTTTGTGGAAGTGGAGAAGCAAGAACATTAGGGTACGGATCT--A-TT--AAA  114
             ||| ||||||||||||||||||||||||||||||||||||||||||||  | ||  |||
Sbjct  81   ATTTATGTTTTGTGGAAGTGGAGAAGCAAGAACATTAGGGTACGGATCTGTACTTGGAAA  140

Query  115  GGAGACCGAATTCCGGCATGTGGCTATAAAAACCCCAATTCATGTGTCAAACAACCAGTT  174
              ||||  |||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct  141  --AGACAAAATTCCGGCATGTGGCTACAAAAACCCCAATTCATGTGTCAAACAACCAGTT  198

Query  175  AACCATTACCATAGAGGTTGTGAAAAAATTACCAGGTGTGCTCGTGATGCTG-CTC  229
            ||||||||||||||||||||||||||| ||| |||||||| ||||||||||| |||
Sbjct  199  AACCATTACCATAGAGGTTGTGAAAAACTTAACAGGTGTGGTCGTGATGCTGACTC  254



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 10073075496


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5