BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G32840.1
Length=1324
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482225 jgi|Araly1|482225|fgenesh2_kg.4__1285__AT2G32840.1 1483 0.0
> Ahg482225 jgi|Araly1|482225|fgenesh2_kg.4__1285__AT2G32840.1
Length=1153
Score = 1483 bits (803), Expect = 0.0
Identities = 1027/1130 (91%), Gaps = 36/1130 (3%)
Strand=Plus/Plus
Query 128 TCCCAATCCCAATCCAAATCCAAATCCTTCCGTCTCTGTAGCAGTATCGACTCCAATCGT 187
|||| |||||||||| ||||| ||||| |||||||||||||| ||||||| |||||||||
Sbjct 9 TCCCGATCCCAATCCCAATCCCAATCCATCCGTCTCTGTAGCGGTATCGAGTCCAATCGT 68
Query 188 CACCGCATCTGAATCTCCGGTGACACAACCTAACACAGTCATAACGCCGTCGTCTCAACC 247
||||||||| |||||||||||||| |||||||||||||||| ||||||||| ||||| ||
Sbjct 69 CACCGCATCCGAATCTCCGGTGACTCAACCTAACACAGTCAAAACGCCGTCTTCTCAGCC 128
Query 248 TCAACCTCAAACACCAGCTTCGTCGTACAGAGCCATAGCTCCGCTTCATCGTCA---TCA 304
|||||||| | |||||||| | ||||||||||| |||||||||||||||||||| |||
Sbjct 129 TCAACCTCCACCACCAGCTCCTTCGTACAGAGCTATAGCTCCGCTTCATCGTCATCCTCA 188
Query 305 TCCTCATCAAAATATCTACACTAACCCTTTACCGATTAGGCGTTCGAATTCCGTTACTAA 364
||||||||||||| ||||| || | |||||||||||||||||||||||||||||||||||
Sbjct 189 TCCTCATCAAAATGTCTACTCTCATCCTTTACCGATTAGGCGTTCGAATTCCGTTACTAA 248
Query 365 TTCGCCTCATCAGCCTCCTCACCCAGACCCGTCTAGTCTGATATACCCGTTTGGTTCTTC 424
||||||||||||| ||||||||||||||||||| | |||| |||||||||||||||||
Sbjct 249 TTCGCCTCATCAG---CCTCACCCAGACCCGTCTACTTTGATTTACCCGTTTGGTTCTTC 305
Query 425 GGGTCGAGGGTTTCCGACCCGACCCGTTAGACAGAATTCCAATTCCGTCGCTGATCCAGT 484
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 306 GGGTCGAGGGTTTCCGACCCGACCCGGTAGACAGAATTCCAATTCCGTCGCTGATCCAGT 365
Query 485 TGGTAGTCCTAGTCCAGGTGGGTATACTCCTCGAGGGCCAGTTTACGGATACCA-C--CA 541
||||||||| | ||||||||| |||||| |||| ||||| | |||||| | ||
Sbjct 366 TGGTAGTCC---T---GGTGGGTATCCTCCTC---GGCCGGTTTATGCATACCACCAACA 416
Query 542 TGGCCAATTCGTGTCGAATTTGGATCCAATG---AATCAGTTCATGAGAGCTGCACATCC 598
||||||||| | |||||||||||||||| || | ||||| |||||||||||||||||
Sbjct 417 TGGCCAATTTGGGTCGAATTTGGATCCAGTGCTTCAGCAGTTGATGAGAGCTGCACATCC 476
Query 599 TCAGAATCAACAATCTCCTCAACTTGGTTCCGGTCATATGAAAGGAGTTCCTCATTTTTT 658
||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 477 TCAGAATCAACAATCTCCTCAACTTGGGTCGGGTCATATGAAAGGAGTTCCTCATTTTTT 536
Query 659 GCAACCTCGGGCTACTCCTTCTCCAACTTCAATTCTAGACAACAGTGGGCATAAGAAGGC 718
||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 537 GCAACCTCGGGTTACTCCTTCTCCAACTTCAATTCTAGACAATAGTGGGCATAAGAAGGC 596
Query 719 CAGGAGCCGGGATGATGCTCTGGTCCTCGTTAGAAAAAGAAAGGTTAGAATAACCGAGGG 778
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 597 CAGGAGCCGGGATGATGCTCTGGTCCTTGTTAGAAAAAGAAAGGTTAGAATAACCGAAGG 656
Query 779 AGCTTCTTTATACTCGCTGTGTCGATCTTGGTTGAGAAATGGTGCTCATGAGGGAATTAA 838
||||||| ||||||| |||||| |||||||||||||||||||||||||||||||||||||
Sbjct 657 AGCTTCTCTATACTCACTGTGTAGATCTTGGTTGAGAAATGGTGCTCATGAGGGAATTAA 716
Query 839 GCCGCAGCGAATTGATATGATGACATGTTTGCCAAAGCCTTTACCTGTGGACAAGACGGA 898
||||||||||| ||||| ||||||||||||||||||||||||||||||||| ||||||
Sbjct 717 GCCGCAGCGAAGTGATACAATGACATGTTTGCCAAAGCCTTTACCTGTGGACTTGACGGA 776
Query 899 GACAAGTTTGCCAAAAGATTTAGTTGAAGAAGCAATTTGCGAAGAAGACAAAGAGGACGA 958
|||||||||||||||||| |||||||||||| ||| | ||||||||||||||||||||||
Sbjct 777 GACAAGTTTGCCAAAAGAGTTAGTTGAAGAACCAAATCGCGAAGAAGACAAAGAGGACGA 836
Query 959 GGAATCTGTGAAACATTTGTCAGAATCTGATCTTTTGAAAAGACATATAGACCGAGCTAA 1018
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 837 GGAATCTGTGAAACATTTGTCAGAATCTGATCTGTTGAAAAGACATATAGACCGAGCTAA 896
Query 1019 GAAGGTCCGCGCTCGATTGAGAGAAGAACGGTTAAAGAGAATCGCGAGGTACAAGGCAAG 1078
||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 897 GAAGGTCCGCGCTCGATTGAGAGAAGAGCGGTTAAAGAGAATTGCGAGGTACAAGGCAAG 956
Query 1079 ATTGGCTCTTCTTCTGCCACCCTTTGGAGAGCAATGCAGGAACGAGTAATGATTTTAAAG 1138
| ||||||||||||||||||| ||||||||||||||| ||||||||||| ||| | |
Sbjct 957 ACTGGCTCTTCTTCTGCCACCATTTGGAGAGCAATGCCGGAACGAGTAAGGATAT-A--- 1012
Query 1139 TTAGGGACTTCGGTGTGAATATACTTGCAGTTGATTTAGAAATGACATAAATTATCTTAG 1198
||||||||||| ||||||||| |||||||||||||||||||| | | ||| || |||||
Sbjct 1013 TTAGGGACTTC--TGTGAATATTCTTGCAGTTGATTTAGAAATCATACAAAGTACCTTAG 1070
Query 1199 AGCCAGAGTTATGTCTTATGTCTGTGTGTAATATAAGAAAGATTTTCTCT 1248
|||||||||||||| || |||| |||||||||||| ||||||||
Sbjct 1071 AGCCAGAGTTATGT-----GT--GTGT--AATATAAGAAAGGTTTTCTCT 1111
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49521669183
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5