BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G32850.2
Length=2525
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482227 jgi|Araly1|482227|fgenesh2_kg.4__1287__AT2G32850.2 3517 0.0
> Ahg482227 jgi|Araly1|482227|fgenesh2_kg.4__1287__AT2G32850.2
Length=2426
Score = 3517 bits (1904), Expect = 0.0
Identities = 2177/2304 (94%), Gaps = 38/2304 (2%)
Strand=Plus/Plus
Query 184 ATTGGATTGGCACTCCTCAGCATCTGGGTTTTTGCAAAGCATTCTTATTACTTCCACTGA 243
||| ||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 158 ATTTGATTGGCTCTTCTCAGCATCTGGGTTTTTGCAAAGCATTCTTATTACTTCCACTGA 217
Query 244 TTCAAACATGTGGAAGTTTAAACCTTTTGCTCAAAAAGAACCTGCGGGTCTCGAAGGTCG 303
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 218 TTCAAACATGTGGAAGTTTAAACCGTTTGCTCAAAAAGAACCTGCGGGTCTCGAAGGTCG 277
Query 304 ATTTCTCGAGATAGGAAATCTGAAAGTTCAAGTTAGAAATGTCATTGCGGAAGGAGGTTT 363
||||||||| |||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 278 ATTTCTCGAAATAGGAAATCTGAAAGTTCAGGTTAGAAACGTCATTGCGGAAGGAGGTTT 337
Query 364 CTCCAGTGTTTACTTAGCTCAAGATGTAAATCACGCGTCAAAGCAATATGCTTTGAAGCA 423
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 338 CTCCAGTGTTTACTTAGCCCAAGATGTAAATCACGCGTCAAAGCAATATGCTTTGAAGCA 397
Query 424 CATGATATGCAATGACGAGGAGTCACTTGAACTCGTAATGAAAGAGATCTCGGTTCTGAA 483
||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 398 CATCATATGCAATGACGAGGAGTCGCTTGAACTCGTAATGAAAGAGATCTCGGTTCTGAA 457
Query 484 ATCCCTCAAGGGACATCCAAATGTTGTCACGCTCTACGCACATGGTATCTTGGATATGGG 543
||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 458 ATCTCTCAAGGGACATCCAAATGTTGTGACGCTCTACGCACATGGTATCTTGGATATGGG 517
Query 544 GAGGAATAAAAAAGAAGCTCTTTTGGCTATGGATTTTTGTGGTAAATCTCTTGTGGATGT 603
||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 518 GAGGAATAAAAAAGAAGCTCTTTTGGCTATGGATTTTTGCGGCAAATCTCTTGTGGATGT 577
Query 604 GCTTGAGAATAGAGGTGCTGGTTACTTTGAAGAGAAACAAGCTCTTACGATTTTTAGAGA 663
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 578 GCTTGAGAATAGAGGTGCTGGTTACTTTGAAGAGAAACAAGCTCTTACAATTTTCAGAGA 637
Query 664 TGTGTGTAATGCTGTCTTTGCAATGCATTGTCAATCCCCACGCATTGCTCACAGAGACTT 723
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 638 TGTGTGTAATGCTGTCTTTGCAATGCATTGTCAAACCCCACGCATTGCTCACAGAGACTT 697
Query 724 GAAGGCTGAGAATCTTCTATTGAGCTCAGATGGACAATGGAAATTGTGTGATTTTGGAAG 783
|||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 698 GAAGGCTGAGAATCTTCTATTGAGCTCAGATGGACAATGGAAGTTGTGCGATTTTGGAAG 757
Query 784 CGTTTCGACAAATCACAAGATTTTTGAAAGAGCAGAAGAGATGGGAATTGAAGAAGATAA 843
|||||| ||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 758 CGTTTCTACAAATCACAAGATTTTCGAAAGAGCAGAAGAGATGGGCATTGAAGAAGATAA 817
Query 844 TATTAGAAAATACACAACACCAACATATAGAGCTCCTGAGATGTGGGATCTCTTTCGAAG 903
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 818 TATTAGAAAATACACAACACCAACATATAGAGCTCCTGAGATGTGGGATCTCTTTCGAAG 877
Query 904 GGAGATGATAAGCGAGAAGGTCGATATATGGGCTCTTGGATGTCTCTTGTTTCGGATATG 963
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 878 GGAGATGATAAGCGAGAAGGTCGATATATGGGCTCTTGGATGTCTCTTGTTTCGGATATG 937
Query 964 CTATTTCAAGAATGCATTTGATGGAGAATCAAAGCTGCAAATCTTAAACGGGAATTATCG 1023
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 938 CTATTTCAAGAATGCATTTGATGGAGAATCAAAGCTGCAGATCTTAAACGGGAATTATCG 997
Query 1024 TATTCCAGAATCGCCTAAATACAGTGTATTTATTACGGATCTCATCAAAGAAATGCTCCA 1083
|||||||||||||||||||||||||| |||| |||| |||||||||||||||||||| ||
Sbjct 998 TATTCCAGAATCGCCTAAATACAGTGCATTTGTTACAGATCTCATCAAAGAAATGCTTCA 1057
Query 1084 AGCTTCACCCGATGAACGACCAGATATTACACAGATTTGGTTTCGTGTCAATGAGCAGCT 1143
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1058 AGCTTCACCCGACGAACGACCAGATATTACACAGATTTGGTTTCGTGTCAATGAGCAGCT 1117
Query 1144 TCCTGCTAATTTACAGAAATCATTACCGGATCGACCACCTGAAATGCAATCTACTGGAGT 1203
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1118 TCCTGCTAATTTACAGAAATCATTACCGGATCGACCACCTGAAATGCAATCTGCTGGAGT 1177
Query 1204 CCATGATGGCTCATCAAAATCAGCAACTAAACCTTCTCCAGCACCTCGTAGAAGTCCGCC 1263
|||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||
Sbjct 1178 CCATGATGGCTCATCAAAATCAGCAAATAAATCTTCTCCAGCACCTCGTAGAAGTCCGCC 1237
Query 1264 ACCGCCGCCACCATCTTCTGGAGAATCAGATAGTGGAGGACCGCTCGGTGCCTTTTGGGC 1323
|||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 1238 ACCGCCGCCACCATCTTCTGGAGAATCAGATAGTGGAGGACCACTAGGTGCCTTTTGGGC 1297
Query 1324 GACTCAGCATGCTAAAACCTCAGT-TGTATCAGAAGATAACAAAAACATGCCTAAATTTG 1382
||||||||| || |||||||| || | | |||||||| ||||||| ||||||||||||||
Sbjct 1298 GACTCAGCACGCCAAAACCTCGGTAT-TGTCAGAAGACAACAAAAGCATGCCTAAATTTG 1356
Query 1383 ATGAACCAAACAGTAACACATCTAAATCTGAAAGAGTTCGTGTGGATAGTCATCAACCCA 1442
|||||||||||||||||||| ||||||||||||||||||||||||||||||| || ||||
Sbjct 1357 ATGAACCAAACAGTAACACAACTAAATCTGAAAGAGTTCGTGTGGATAGTCAACATCCCA 1416
Query 1443 AAAAACCAAGTCCTGTGAGAGGAGAGGCTCGTGGTATTCAAAGAAATAAAGATCTTGAAA 1502
| || || ||||||||||||||||||| ||||||||| ||| | |||
Sbjct 1417 AGAAGCCTAGTCCTGTGAGAGGAGAGGTTCGTGGTAT-----GAA-T-----TCT----- 1460
Query 1503 CTACGATTTCTCAGAAGAATACAACTCCTGCTGCAGCCAATAACATGACAAGAGTGTCCA 1562
| | || || || |||||||||||||||| ||||||||| ||||||||||||||
Sbjct 1461 C-A-GA------AG--GA-TACAACTCCTGCTGCAACCAATAACAGGACAAGAGTGTCCA 1509
Query 1563 AGGATGATGCCTTCAACTCGTTTGTTGCTGACTTTGATACCACAAAGTTCGATAATGGTA 1622
||||||| ||||| ||||||||||||||||||||||||||||| ||| ||||||||||||
Sbjct 1510 AGGATGACGCCTTTAACTCGTTTGTTGCTGACTTTGATACCACGAAGCTCGATAATGGTA 1569
Query 1623 ATAAACCTGGCAAAGAAGAGGCATTGGAAGCTGAGATACAGAGGTTAAAAGACGAGTTGA 1682
|||||||||| ||||||||||| ||||||||||||||| |||||||||||||||||||||
Sbjct 1570 ATAAACCTGGAAAAGAAGAGGCGTTGGAAGCTGAGATAGAGAGGTTAAAAGACGAGTTGA 1629
Query 1683 AGCAAACAAAATCAGAGAAGGCAGAAATAACTGCTAAGTTTGAAAAGCTTTCTGCTATCT 1742
|| ||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1630 AGAAAACAAATTCAGAGAAGGCTGAAATAACTGCTAAGTTTGAAAAGCTTTCTGCTATCT 1689
Query 1743 GCAGATCGCAAAGGCAAGAGTTGCAGGATCTCAAACAAACACTTGCCTCTAAAAGTGCCT 1802
||||||| || |||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1690 GCAGATCACAGCGGCAAGAGTTGCAGGATCTCAAACAAACACTTGCTTCTAAAAGTGCCT 1749
Query 1803 CACCGTCACCGAGCAGAGACTCTTCACAAAATCAACCCTCTCCAGGGATGCATTCCATGT 1862
|||| |||||||||||||| |||||||||| |||||||||||||||||||||||||||||
Sbjct 1750 CACCATCACCGAGCAGAGAATCTTCACAAAGTCAACCCTCTCCAGGGATGCATTCCATGT 1809
Query 1863 CATCAACTCCATCGAGAGATAAGATGGAAGGAACAATGTGGGAACTTCAACAGGACAGAT 1922
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1810 CATCAACTCCATCGAGAGATAAGATTGAAGGAACAATGTGGGAACTTCAACAGGACAGAT 1869
Query 1923 CTAACTGGTCAACTGGCAGCTCTGATACAAATTCATGGCAACCTTTTAGTGATGAAGCGA 1982
|||| ||||| ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1870 CTAATTGGTCCACTGGCAGCTCGGATACAAATTCATGGCAACCTTTTAGTGATGAAGCGA 1929
Query 1983 AACCCGTGATGGAATCTGCATCAAAGGGTAACAATAATACGATTAATCAGTCTGTGAGAA 2042
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1930 AACCCGTGATGGAGTCTGCATCAAAGGGTAACAATAATACGATTAATCAGTCTGTGAGAA 1989
Query 2043 CCAGAAGTAAACCAGCTTCTGCTGCAGGTACTCAAGGTTTTGAGCCATGGGGTTTCGAGA 2102
|||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||
Sbjct 1990 CCAGAAGTAAACCAGCTTCTGCTGCAGGTACTCAAGGTTTTGAGGCATGGGGTTTTGAGA 2049
Query 2103 CAGAATCCTTTAGAGCCGCTGCAACGTCTGCAGCTGCTACTTCTGCATCTGGAACACAAA 2162
|||||||||| ||||||||||| |||||| ||||| ||||| || |||| ||||||||
Sbjct 2050 CAGAATCCTTCAGAGCCGCTGCCACGTCTTCAGCTACTACTGCT---TCTGCAACACAAA 2106
Query 2163 GATCTATGGGCTCTGGAAACAGCACTTCACAGAGATATGGGAACTCAAAGATGAGAGAAA 2222
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
Sbjct 2107 GATCTATGGGCTCTGGAAACAACACTTCACAGAGATATGGGAACTCAAAGATGAGAGATA 2166
Query 2223 ACCAGAAAACAGCTCAACCTGCTGGATGGGCCGGCTTCTAAAACTCACTCAGATGCGCAT 2282
||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||
Sbjct 2167 ACCAGAAAACAGCTCAACCTGCTGGATGGGCTGGCTTCTAAAACTCACTCAGATGCTCAT 2226
Query 2283 TGCTATTTCTTCCTCATGCAACAACAACAGCTTCATGTTGCTGCCATTACAGAATCTTGA 2342
| |||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2227 TACTATATCTTCCTCTTGCAACAACAACAGCTTCATGTTGCTGCCATTACAGAATCTTGA 2286
Query 2343 ATC-TTTTT-GTAGATGATGATCATCCCCTGTTTTTGTGCTGCTGCTAAATATACCCCAC 2400
||| ||||| |||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 2287 ATCCTTTTTTGTAGATGATGATCATCCCCTGTTTTTGTGCTGCT---AAATATACCCCAC 2343
Query 2401 CCATATCCATTATGTTTTATGTAGAGTCTTAAACTTTACACATTCTCTGAGCTGTGGCCA 2460
||||||||| ||| |||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 2344 CCATATCCAGTAT-TTTTATGTAGAGTCTTGAACTTTACACATTCTCTGAGCTGTGGCCA 2402
Query 2461 GATATCTCAGCTTATGGATTATTA 2484
|||||||||||| ||||||||||
Sbjct 2403 AATATCTCAGCTTTTGGATTATTA 2426
Score = 213 bits (115), Expect = 5e-54
Identities = 147/161 (91%), Gaps = 7/161 (4%)
Strand=Plus/Plus
Query 3 AACCAAAATGTTCTTATCTCACTTTCCTTTCTATTCCCGGATTTGCCG----C-T-TTCT 56
|||||||||||||||||||||||||||||||||||||||||||||||| | | ||||
Sbjct 1 AACCAAAATGTTCTTATCTCACTTTCCTTTCTATTCCCGGATTTGCCGCTTTCTTCTTCT 60
Query 57 TCTTCTTCATCATCTCTCTCTCAAAATCACCCCTTTTAAAGTTGTTTCCTTTATACGCAA 116
||||||||| |||||||||||| |||| ||||||||||||||| |||||| |||||||
Sbjct 61 TCTTCTTCAACATCTCTCTCTCGAAAT-TGCCCTTTTAAAGTTGTCTCCTTTCTACGCAA 119
Query 117 AAGTGAACGCAGATCTTAATGCAGCTACTGTGATTTCGATT 157
||||||||||||||||||||||||||||| |||||||||||
Sbjct 120 AAGTGAACGCAGATCTTAATGCAGCTACTCTGATTTCGATT 160
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 95187522255
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5