BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G32860.2
Length=2096
Score E
Sequences producing significant alignments: (Bits) Value
Ahg933864 jgi|Araly1|933864|scaffold_401852.1 2942 0.0
> Ahg933864 jgi|Araly1|933864|scaffold_401852.1
Length=1885
Score = 2942 bits (1593), Expect = 0.0
Identities = 1798/1895 (95%), Gaps = 21/1895 (1%)
Strand=Plus/Plus
Query 26 TTCACAAGAAAAAACACTCATATGGCTACAGCTACTCTCACTCTTTTCCTAGGGCTCTTA 85
|||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1 TTCACAAG-AAAAACACTCATATGGCTACAGCTACTCTCACTCTTTTCCTAGGGATCTTA 59
Query 86 GCCTTAACTAGTACCATACTTAGCTTCAACGCCGATGCTAGGCCTCAACCAAGTGATGAG 145
||||| || |||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 60 GCCTTGACAAGTACCATACTTAGTTTCAACGCCGATGCTAGGCCTCAACCAAGAGATGAG 119
Query 146 GATCTTGGTACCATCATTGGACCTCATCAAACTAGCTTCGATGACGAGATAGGCATCGTG 205
|||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 120 GATCTTGGTACCGTCATTGGACCTCATCAAACTAGCTTCGATGACGAGGTAGGCATCGTG 179
Query 206 ATTGGACCACATGCGACCGT--A-GATGACGAAGACATTGACATGGACATGGGCACCACC 262
|||||||| ||||||||||| | ||||||||||| || ||||||||||||||||||| |
Sbjct 180 ATTGGACCGCATGCGACCGTCGATGATGACGAAGATATGGACATGGACATGGGCACCAGC 239
Query 263 GTTGGACCGCAGACCAACCTAAATGATGATGATTTGGGCACCATCATTGGACCCGAGTTT 322
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 240 GTTGGACCGCACACCAACCTAAATGATGATGATTTGGGCACCATCATTGGACCCGAGTAT 299
Query 323 GAGATCCACAAGCAAGATTTCCCCGCAGATTTCATATTTGGAACATCTGTTTCCGCATAT 382
||||||||||||||||||||||||| ||||||||| |||||||||||||||||||| |||
Sbjct 300 GAGATCCACAAGCAAGATTTCCCCGAAGATTTCATCTTTGGAACATCTGTTTCCGCTTAT 359
Query 383 CAGGTTGAAGGTGCTAAAAAGGGTTCTGGGAGAGGCTTGACCTCATGGGACGAATTTACA 442
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 360 CAGGTTGAAGGTGCTAAAAAGGGTTCTGGAAGAGGCTTGACCTCATGGGACGAATTTACA 419
Query 443 CACATGTTTCCTGAGAAGGTTCAACAAAATGGCGATGGAGATGAGGGAGTCGACTTCTAT 502
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 420 CACATGTTTCCTGAGAAGGTTCAACAAAATGGCGATGGAGATGACGGAGTCGACTTCTAT 479
Query 503 ACCCGTTACAA-GGATGATATAAAATTAATGAAGGAGTTGAACACGAATGGCTTCAGATT 561
| ||||||||| ||| |||||||||||||||||| |||||||||||||||||||||||||
Sbjct 480 AACCGTTACAAGGGA-GATATAAAATTAATGAAGCAGTTGAACACGAATGGCTTCAGATT 538
Query 562 TTCAATCTCATGGACCAGGATCTTGCCTTATGGAACTATTAAAAAAGGTGTAAACGAGGA 621
|||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||
Sbjct 539 TTCAATCTCATGGACCAGGATCTTGCCTTATGGAACTATTGAAAAAGGTGTTAACGAGGA 598
Query 622 GGGGGTGAAGTTCTACAACGATCTTATAAATGAACTTTTAGCTAATGGAATTCAGCCTTC 681
|||||||||||||||||||||||||||| ||||||||||||| |||||||| || |||||
Sbjct 599 GGGGGTGAAGTTCTACAACGATCTTATAGATGAACTTTTAGCCAATGGAATACAACCTTC 658
Query 682 GGTTACTCTCTTTCACTGGGAATCTCCACTTGCTCTAGAAATGGAGTACGGAGGTTTCCT 741
||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||
Sbjct 659 GGTTACTCTCTTTCACTGGGAATCTCCGCTTGCTCTAGAAATGGAGTACAAAGGTTTCCT 718
Query 742 AAACGAAAGGATAGTAGAGGATTTCCGTG-AGTTTGCAAACTTTTGCTTCAAGGAATTTG 800
|| ||| |||||||||||||||||||| | ||||||||||||||||||||||||||||||
Sbjct 719 AAGCGATAGGATAGTAGAGGATTTCCG-GCAGTTTGCAAACTTTTGCTTCAAGGAATTTG 777
Query 801 GAGATAGGGTGAAGAATTGGGCGACGTTTAACGAGCCATCGGTATACAGCGTTGCTGGTT 860
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 778 GAGATAGGGTGAAGAATTGGGCGACGTTTAACGAGCCATCGGTATACAGCGTTGCTGGTT 837
Query 861 ACTCGAAAGGTAAGAAAGCACCAGGACGGTGCTCTAAATGGCAAGCCCCAAAATGTCCCA 920
||||||||||||||||||| ||||||||||| |||||||||| |||||||||||||||||
Sbjct 838 ACTCGAAAGGTAAGAAAGCGCCAGGACGGTGTTCTAAATGGCTAGCCCCAAAATGTCCCA 897
Query 921 CAGGAGATTCATCCGAGGAGCCATACATAGTTGCTCACAACCAAATTCTTGCTCATCTTG 980
|||||||||||| |||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 898 CAGGAGATTCATACGAGGAACCATACATAGTTGCCCACAACCAAATTCTTGCTCATCTTG 957
Query 981 CTGCTGTTGATGAATTCCGAAACTGTAAAAAG-GTC--GAGGGTGGAGGGAAAATTGGGA 1037
|||||||||||||||||||||||||||||||| | | |||||||||||||||||||| |
Sbjct 958 CTGCTGTTGATGAATTCCGAAACTGTAAAAAGTGCCAAGAGGGTGGAGGGAAAATTGGAA 1017
Query 1038 TAGTGTTGGTATCTCACTGGTTCGAGCCTAAAGATCCAAATTCGAGTGAAGACGTCAAAG 1097
||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| | |
Sbjct 1018 TAGTGTTGGTATCTCACTGGTTCGAGCCTAAAGATCCAAATTCGAGTAAAGATGTCGAGG 1077
Query 1098 CAGCTAGACGATCCCTCGAGTACCAACTCGGCTGGTTTCTTCGCCCTCTCACATATGGAC 1157
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1078 CAGCTAGACGGTCCCTCGAGTACCAACTCGGCTGGTTTCTTCGCCCTCTCACATATGGAC 1137
Query 1158 AGTATCCAGCGGAAATGTTAGAAGATGTAAACATCCGACTGCGTGAATTTACACCAGAAG 1217
| ||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1138 ATTATCCAGTGGAAATGTTAGAAGATGTAAACATCCGACTGCCTGAATTTACACCAGAAG 1197
Query 1218 AATCTGAGAAACTAAGAAAATCTTTGGATTTCGTCGGATTAAATTACTATGGAGCATTCT 1277
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1198 AATCTGAGAAACTAAGAAAATCTTTGGATTTCGTCGGATTAAACTACTATGGAGCATTCT 1257
Query 1278 TCTCTACCCCTCTCGCCAAAGTCAATTCATCGCAGCTTAATTATGAGACCGACTTACGTG 1337
||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1258 TCTCTACCCCTCTTGCCAGTGTCAATTCATCGCAGCTTAATTATGAGACCGACTTACGTG 1317
Query 1338 TAAACTGGACAGTTATTA-CTAATAACCTAAGTCTTCCTGATTTGCA-GACAACTTCAAT 1395
|||||||||||| || | | || |||| | || || || | || | ||||||||||
Sbjct 1318 TAAACTGGACAG--ATCAGC-AA-AACC-AT-TCA-CCACATCT-CAAGTCAACTTCAAT 1369
Query 1396 GGGTATAGTGATATATCCAGCGGGTTTGAAGAATATCTTGAAACATATCAAAGACGAATA 1455
||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct 1370 GGGTATAGTGATATATCCAGCGGGTTTGATGAAGATCTTGAAACATATCAAAGACGAATA 1429
Query 1456 CATGGACCCAGAGATTTACATTATGGAGAATGGGATGGACGAGATCGACTATGGGACCAA 1515
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1430 CATGGACCCAGAGATTTACATTATGGAGAATGGGATGGACGAGATCGACTATGGGACCAA 1489
Query 1516 AAACATAACGGAAGCTACTAACGATTACGGGAGGAAAGAGTTCATCAAGAGTCACATCTT 1575
|| | |||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1490 AAGCGTAACGGAAGCCACTAACGATTACGGGAGGAAAGAGTTCATCAAGAGTCACATCTT 1549
Query 1576 AATCATGGGTAAATCCATCAGGATGGACAAAGTGAGGCTGAAGGGTTACTACATATGGTC 1635
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1550 AATCATGGGTAAATCCATCAGGATGGACAAAGTGAGGCTGAAGGGTTACTACATATGGTC 1609
Query 1636 GTTAATGGACAACTTCGAGTGGGATAAAGGTTATAAAGTCAGGTTCGGGCTCTATTACGT 1695
|||| |||||||||||||||||||||||||||| ||| ||||||||||||| ||||||||
Sbjct 1610 GTTATTGGACAACTTCGAGTGGGATAAAGGTTACAAAATCAGGTTCGGGCTTTATTACGT 1669
Query 1696 CGATTATAATGACAACATGAAACGTTATATAAGGTCATCTGGAAAATGGCTAAGTGAGTT 1755
|||||||||| ||||||||| ||| ||||||||||||||||| |||||||||||||||||
Sbjct 1670 CGATTATAATAACAACATGACACGATATATAAGGTCATCTGGGAAATGGCTAAGTGAGTT 1729
Query 1756 TCTTGATTCCAAAGAGACTCTCCATAAATGCTATTTCGAGGGCCATCGTGAGAAAGGATA 1815
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1730 TCTTGATTCCAAAGAGACTCTCCATAAATGCTATTTTGAGGGCCATCGTGAGAAAGGATA 1789
Query 1816 TGCACCCAAGTTGTTCGACGTTGAGTATCTGGAACCTGAGAACTCGCAGCTAAGTTACAG 1875
||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1790 TGCTCCTAAGTTGTTCGACGTTGAGTATCTGGAACCTGAGAACTCGCAGCTAAGTTACAG 1849
Query 1876 GAGCGATTTTATGTGAAGAAATGGTGAAAGTATGA 1910
|||||||||||||||||||| |||||||| |||||
Sbjct 1850 GAGCGATTTTATGTGAAGAAGTGGTGAAACTATGA 1884
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78846807150
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5