BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G32880.1 Length=1211 Score E Sequences producing significant alignments: (Bits) Value Ahg933866 jgi|Araly1|933866|scaffold_401854.1 1147 0.0 Ahg482229 jgi|Araly1|482229|fgenesh2_kg.4__1289__AT2G32870.1 1147 0.0 > Ahg933866 jgi|Araly1|933866|scaffold_401854.1 Length=966 Score = 1147 bits (621), Expect = 0.0 Identities = 878/996 (88%), Gaps = 41/996 (4%) Strand=Plus/Plus Query 42 GACGACCATCATGCTCAAAATGGGTCTAACGTCATTTGAAGACG-CCATAAAAGAGCAGC 100 |||||||||||| ||||||||||||||||||||||||||||| | |||||||||| ||| Sbjct 4 GACGACCATCATCCTCAAAATGGGTCTAACGTCATTTGAAGA-GATCATAAAAGAGAAGC 62 Query 101 TAAAGGAACGAAAAAACGCTCACTTCATGTTGGTTGATGGAATGTCGAAGCTACTGACTG 160 ||||||| || ||||||||||||||||||||||||||||||||||| |||||| ||||| Sbjct 63 TAAAGGACCGCAAAAACGCTCACTTCATGTTGGTTGATGGAATGTCTAAGCTATTGACTC 122 Query 161 AAAAAGTTAACAATTTTCAGTCATTGGATTTCCAAGTATCTGGTCTCAAATGGAGGTTGC 220 |||||||||| |||| |||||||||||||||||| || |||||| ||||||||||||||| Sbjct 123 AAAAAGTTAATAATTGTCAGTCATTGGATTTCCATGTTTCTGGTATCAAATGGAGGTTGC 182 Query 221 TTATACAACCAGCTGTGGGAGTAAAAGATTATCTATCTGTTGCTGTATGGATCATAGATG 280 |||||| |||||||||||| | ||||||||||||||||||||||| ||||||||||||| Sbjct 183 TTATACGCCCAGCTGTGGGATTCAAAGATTATCTATCTGTTGCTGTGTGGATCATAGATG 242 Query 281 AAAAGTGTACCGGGCCTAATTGGGAAGTCAAATTCAACTTCAAAATCGGCCTACTCCCTC 340 ||||||||||||| ||||||||||||||||||||||||||||||||||| || |||||| Sbjct 243 AAAAGTGTACCGGATCTAATTGGGAAGTCAAATTCAACTTCAAAATCGGCGTAGTCCCTC 302 Query 341 AGACTGGACCTGAATATTTC-TACGTCTCGGTGGGGTGTCACAACGAA-AAACAACCTGC 398 ||||||||||||||| |||| || ||| |||||||||||||||| || ||| | ||| | Sbjct 303 AGACTGGACCTGAAT-TTTCGTATTTCTTGGTGGGGTGTCACAACCAACAAA-ACCCT-C 359 Query 399 -TCAAGGGGTAGTCAAATTCATAACACACACGCAGTTAAAGGAGAGGTTTCTTGTGAACG 457 ||||||| ||| ||| |||||| | ||||| ||| |||||||||||||||||||||| Sbjct 360 TTCAAGGGTTAGACAACTTCATATTATACACGGTGTTGAAGGAGAGGTTTCTTGTGAACG 419 Query 458 ACAAAGCGGTTTTCTATGCCGAGATAAGCGAAGAAGTC-ATACCAAACTTCCTCGTTACT 516 ||||||||||||||||||||||||||||| || ||| | ||||||||||| |||||| Sbjct 420 ACAAAGCGGTTTTCTATGCCGAGATAAGC-AAT--GTCCA-ACCAAACTTCCCCGTTACC 475 Query 517 GGTATCCCTCGAACCATGGGGACAGCAGAACGCTTTAAACTGATAGAGGTGGCTCGGAAC 576 |||||||||| |||||| || ||||||||||||||||||||||||||||||||||||||| Sbjct 476 GGTATCCCTCCAACCATAGGAACAGCAGAACGCTTTAAACTGATAGAGGTGGCTCGGAAC 535 Query 577 AATTCCAGATTCACCTGGAAGATCACGAAGTTTTCCTCCTTCAATGGTGAAGAGCATTCG 636 || |||||||||||||||||||||||||||||||||||||||| ||||| |||||||||| Sbjct 536 AACTCCAGATTCACCTGGAAGATCACGAAGTTTTCCTCCTTCACTGGTGTAGAGCATTCG 595 Query 637 TCTTACGAGTTCACGGTTGGACCACGGAGATGGAAACTAGT-AATGTACCCAAGAGGAAC 695 ||| |||||||||||||||||||||||||||||| ||| | ||||||||||| ||| Sbjct 596 TCTGACGAGTTCACGGTTGGACCACGGAGATGGAGGCTA-TCAATGTACCCAAAAGGTTT 654 Query 696 CGGAGATGGGAAAGGAAACTCGTTGTCTTTGTATTTGAATGCGTCTAATTACGTCACCAA 755 ||||||||||||||||| ||||||||||||||||||| ||| || |||||||||| Sbjct 655 TGGAGATGGGAAAGGAAATTCGTTGTCTTTGTATTTGATTGCTTCCGATTACGTCAC--- 711 Query 756 TAATGGTCCAAAGGGGAG-AACATTCGCGGTCTATAAATTGAGAGTGTTGGACCAACTCC 814 | |||||||||||||| | |||||| || |||||||| |||||||||||||||||||||| Sbjct 712 TGATGGTCCAAAGGGG-GTAACATTGGCTGTCTATAAGTTGAGAGTGTTGGACCAACTCC 770 Query 815 ATCGCAATCATT-TCGAAATTGACTGCCAAGATTGGTTTCTTTATGATCCGGTTCATCCA 873 |||||||||| | | |||||| ||||| |||||||||||||| || | | | | Sbjct 771 ATCGCAATCACTAT-GAAATTAACTGCGAAGATTGGTTTCTTCAT--T----TA-A-C-- 819 Query 874 AGATTATGCTCATGGGGACGTACCAAGTTCTTGCCGCTGGAGGAACTCCACAAAGCTTCT 933 || | | |||||||||| ||||| ||||||||||||||||||||||||||||| Sbjct 820 -GA-----C-C-TGGGGACGTAATAAGTTTTTGCCGCTGGAGGAACTCCACAAAGCTTCG 871 Query 934 AGGGGATTTCTGGTGAATGATCAGATATATATCGGTGTTGAATTCTTAATTGTATCCACT 993 ||||||||||| ||||| ||||||||||||||||||||||| |||||||||||||||||| Sbjct 872 AGGGGATTTCTAGTGAACGATCAGATATATATCGGTGTTGAGTTCTTAATTGTATCCACT 931 Query 994 ACTGAGTATCTCTGATGCGCATTCACGGGTTTGATC 1029 |||||||||||||||||||||| |||| || |||| Sbjct 932 ACTGAGTATCTCTGATGCGCATA-ACGGATTCGATC 966 > Ahg482229 jgi|Araly1|482229|fgenesh2_kg.4__1289__AT2G32870.1 Length=1531 Score = 1147 bits (621), Expect = 0.0 Identities = 935/1082 (86%), Gaps = 40/1082 (4%) Strand=Plus/Plus Query 15 aaaaa-aaTC-TACTACGGTGTATTATACGACGACCATCATGCTCAAAATGGGTCTAACG 72 ||||| || | ||||||||| | | || |||||||||||| |||| |||||||||| || Sbjct 196 AAAAAGAACCATACTACGGT-AAAT-TA-GACGACCATCATCCTCATAATGGGTCTACCG 252 Query 73 TCATTTGAAGACGCCATAAAAGAGCAGCTAAAGGAACGAAAAAACGCTCACTTCATGTTG 132 ||| |||||||| ||||||||||| |||||||||| || ||||||||||||||||||||| Sbjct 253 TCACTTGAAGACACCATAAAAGAGAAGCTAAAGGACCGCAAAAACGCTCACTTCATGTTG 312 Query 133 GTTGATGGAATGTCGAAGCTACTGACTGAAAAAGTTAACAATTTTCAGTCATTGGATTTC 192 |||||||||||||| |||||||||||||||||||||||||||| ||||||| |||||||| Sbjct 313 GTTGATGGAATGTCTAAGCTACTGACTGAAAAAGTTAACAATTGTCAGTCAGTGGATTTC 372 Query 193 CAAGTATCTGGTCTCAAATGGAGGTTGCTTATACAAC-CAGCT-GTGGG-AGTAAAAGAT 249 ||||| |||||| |||||||||||||| |||||| | | || | ||| || |||||| Sbjct 373 CAAGTTTCTGGTATCAAATGGAGGTTGGTTATAC-GCTTATCTAG-GGGAAG-AAAAGAC 429 Query 250 TATCTAT-CTGTTGCTGTAT-G-GATCATAGATGAAAAGTGTACCGGGCCTAATTGGGAA 306 |||||| || ||| | | | | ||||| ||||||||||||||||||| ||||||||||| Sbjct 430 CATCTATCCT-TTG-T-TCTCGAGATCACAGATGAAAAGTGTACCGGGTCTAATTGGGAA 486 Query 307 GTCAAATTCAACTTCAAAATCGGCCTACTCCCTCAGACTGGACCTGAATATTTCTACGTC 366 |||||||||||||||||||||||| || ||||||||||||||||||| |||| || ||| Sbjct 487 GTCAAATTCAACTTCAAAATCGGCATAGTCCCTCAGACTGGACCTGATTATTGCTTCGTT 546 Query 367 TCGGTGGGGTGTCACAACGAAAAACAACCTGCTCAAGGGGTAGTCAAATTCATAACACAC 426 | ||||||| ||| ||||||||||||| | ||||||| ||| ||| || ||| ||||| Sbjct 547 TTGGTGGGGCATCAAAACGAAAAACAACGTATTCAAGGGCTAGCCAACTTTATATCACAC 606 Query 427 ACGCAGTTAAAGGAGAGGTTTCTTGTGAACGACAAAGCGGTTTTCTATGCCGAGATAAGC 486 ||| | || ||||||||||||||||||||||||| ||||| ||||||||||||||||||| Sbjct 607 ACGGATTTGAAGGAGAGGTTTCTTGTGAACGACATAGCGGGTTTCTATGCCGAGATAAGC 666 Query 487 GAAGAAGT-CATACCAAACTTCCTCGTTACTGGTATCCCTCGAACCATGGGGACAGCAGA 545 || || || ||||||||||| ||||||| ||||||||||||| ||||| ||||| || Sbjct 667 ---GATGTCCA-ACCAAACTTCCCCGTTACTCGTATCCCTCGAACAATGGGCACAGCCGA 722 Query 546 ACGCTTTAAACTGATAGAGGTGGCTCGGAACAATTCCAGATTCACCTGGAAGATCACGAA 605 ||||||||||||||||||| | ||| || || |||||||||||||||||||||||| | Sbjct 723 ACGCTTTAAACTGATAGAGTTTTCTCCGAGGAACTCCAGATTCACCTGGAAGATCACGCA 782 Query 606 GTTTTCCTCCTTCAATGGTGAAGAGCATTCGTCTTACGAGTTCACGGTTGGACCACGGAG 665 ||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 783 GTTTTCCTCCTTCGATGGTGAAGAGCATTCTTCTTACGAGTTCACGGTTGGACCACGGAG 842 Query 666 ATGGAAACTAGTAATGTACCCAAGAGGAACCGGAGATGGGAAAGGAAACTCGTTGTCTTT 725 ||||||||||||||||||||||| ||||| |||||||||||||||||| ||||||||||| Sbjct 843 ATGGAAACTAGTAATGTACCCAAAAGGAAACGGAGATGGGAAAGGAAATTCGTTGTCTTT 902 Query 726 GTATTTGAATGCGTCTAATTACGTCACCAATAATGGTCCAAAGGG-GAGAACATTCGCGG 784 ||||||| ||| || |||||||||| || | |||||| ||||| | ||||||| || Sbjct 903 GTATTTGTTTGCATCCGATTACGTCAC-AA-A-TGGTCCTAAGGGTG-GAACATTGGCCA 958 Query 785 TCTATAAATTGAGAGTGTTGGACCAACTCCATCGCAATCATT-TCGAAATTGACTGCCA- 842 |||| ||||||||||||||||||||||||||||||||||| | | |||| ||| ||| | Sbjct 959 TCTACAAATTGAGAGTGTTGGACCAACTCCATCGCAATCACTGT-GAAACTGATTGC-AG 1016 Query 843 AGATTGGTTTCTTTATGATCCGGTTCATCCAA-G-ATTATGCTCATGGGGACGT-ACCAA 899 | ||||||||| |||| |||||||| |||||| | ||| || |||||||||| || || Sbjct 1017 ATATTGGTTTCCTTATAATCCGGTTGATCCAATGGATTC--CTTATGGGGACGTCAC-AA 1073 Query 900 GTTCTTGCCGCTGGAGGAACTCCACAAAGCTTCTAGGGGATTTCTGGTGAATGATCAGAT 959 ||| ||||||||||||||||||||||| || || | |||||||| ||||| |||||||| Sbjct 1074 GTTTTTGCCGCTGGAGGAACTCCACAATGCGTCGAAAGGATTTCTAGTGAACGATCAGAT 1133 Query 960 ATATATCGGTGTTGA-ATTCTTAATTGTATCCACTACTGAGTATCTCTGATGCGCATTCA 1018 ||||||||||||||| || || |||||||||||||||||||||||||||||||| || | Sbjct 1134 ATATATCGGTGTTGATAT-CTCAATTGTATCCACTACTGAGTATCTCTGATGCGTTTTAA 1192 Query 1019 CGGGTTTGATCAAGACCACACCAATAAATAGCTCCCGTTGAACCTATCTACCTATTGTTC 1078 || || ||||||||||||| ||| ||||||||| | ||||||||||||||||| ||| Sbjct 1193 CGAATTAGATCAAGACCACAAAAATGAATAGCTCCTGCTGAACCTATCTACCTATA-TTC 1251 Query 1079 TA 1080 || Sbjct 1252 TA 1253 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 45213779562 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5