BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G32880.1
Length=1211
Score E
Sequences producing significant alignments: (Bits) Value
Ahg933866 jgi|Araly1|933866|scaffold_401854.1 1147 0.0
Ahg482229 jgi|Araly1|482229|fgenesh2_kg.4__1289__AT2G32870.1 1147 0.0
> Ahg933866 jgi|Araly1|933866|scaffold_401854.1
Length=966
Score = 1147 bits (621), Expect = 0.0
Identities = 878/996 (88%), Gaps = 41/996 (4%)
Strand=Plus/Plus
Query 42 GACGACCATCATGCTCAAAATGGGTCTAACGTCATTTGAAGACG-CCATAAAAGAGCAGC 100
|||||||||||| ||||||||||||||||||||||||||||| | |||||||||| |||
Sbjct 4 GACGACCATCATCCTCAAAATGGGTCTAACGTCATTTGAAGA-GATCATAAAAGAGAAGC 62
Query 101 TAAAGGAACGAAAAAACGCTCACTTCATGTTGGTTGATGGAATGTCGAAGCTACTGACTG 160
||||||| || ||||||||||||||||||||||||||||||||||| |||||| |||||
Sbjct 63 TAAAGGACCGCAAAAACGCTCACTTCATGTTGGTTGATGGAATGTCTAAGCTATTGACTC 122
Query 161 AAAAAGTTAACAATTTTCAGTCATTGGATTTCCAAGTATCTGGTCTCAAATGGAGGTTGC 220
|||||||||| |||| |||||||||||||||||| || |||||| |||||||||||||||
Sbjct 123 AAAAAGTTAATAATTGTCAGTCATTGGATTTCCATGTTTCTGGTATCAAATGGAGGTTGC 182
Query 221 TTATACAACCAGCTGTGGGAGTAAAAGATTATCTATCTGTTGCTGTATGGATCATAGATG 280
|||||| |||||||||||| | ||||||||||||||||||||||| |||||||||||||
Sbjct 183 TTATACGCCCAGCTGTGGGATTCAAAGATTATCTATCTGTTGCTGTGTGGATCATAGATG 242
Query 281 AAAAGTGTACCGGGCCTAATTGGGAAGTCAAATTCAACTTCAAAATCGGCCTACTCCCTC 340
||||||||||||| ||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 243 AAAAGTGTACCGGATCTAATTGGGAAGTCAAATTCAACTTCAAAATCGGCGTAGTCCCTC 302
Query 341 AGACTGGACCTGAATATTTC-TACGTCTCGGTGGGGTGTCACAACGAA-AAACAACCTGC 398
||||||||||||||| |||| || ||| |||||||||||||||| || ||| | ||| |
Sbjct 303 AGACTGGACCTGAAT-TTTCGTATTTCTTGGTGGGGTGTCACAACCAACAAA-ACCCT-C 359
Query 399 -TCAAGGGGTAGTCAAATTCATAACACACACGCAGTTAAAGGAGAGGTTTCTTGTGAACG 457
||||||| ||| ||| |||||| | ||||| ||| ||||||||||||||||||||||
Sbjct 360 TTCAAGGGTTAGACAACTTCATATTATACACGGTGTTGAAGGAGAGGTTTCTTGTGAACG 419
Query 458 ACAAAGCGGTTTTCTATGCCGAGATAAGCGAAGAAGTC-ATACCAAACTTCCTCGTTACT 516
||||||||||||||||||||||||||||| || ||| | ||||||||||| ||||||
Sbjct 420 ACAAAGCGGTTTTCTATGCCGAGATAAGC-AAT--GTCCA-ACCAAACTTCCCCGTTACC 475
Query 517 GGTATCCCTCGAACCATGGGGACAGCAGAACGCTTTAAACTGATAGAGGTGGCTCGGAAC 576
|||||||||| |||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 476 GGTATCCCTCCAACCATAGGAACAGCAGAACGCTTTAAACTGATAGAGGTGGCTCGGAAC 535
Query 577 AATTCCAGATTCACCTGGAAGATCACGAAGTTTTCCTCCTTCAATGGTGAAGAGCATTCG 636
|| |||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 536 AACTCCAGATTCACCTGGAAGATCACGAAGTTTTCCTCCTTCACTGGTGTAGAGCATTCG 595
Query 637 TCTTACGAGTTCACGGTTGGACCACGGAGATGGAAACTAGT-AATGTACCCAAGAGGAAC 695
||| |||||||||||||||||||||||||||||| ||| | ||||||||||| |||
Sbjct 596 TCTGACGAGTTCACGGTTGGACCACGGAGATGGAGGCTA-TCAATGTACCCAAAAGGTTT 654
Query 696 CGGAGATGGGAAAGGAAACTCGTTGTCTTTGTATTTGAATGCGTCTAATTACGTCACCAA 755
||||||||||||||||| ||||||||||||||||||| ||| || ||||||||||
Sbjct 655 TGGAGATGGGAAAGGAAATTCGTTGTCTTTGTATTTGATTGCTTCCGATTACGTCAC--- 711
Query 756 TAATGGTCCAAAGGGGAG-AACATTCGCGGTCTATAAATTGAGAGTGTTGGACCAACTCC 814
| |||||||||||||| | |||||| || |||||||| ||||||||||||||||||||||
Sbjct 712 TGATGGTCCAAAGGGG-GTAACATTGGCTGTCTATAAGTTGAGAGTGTTGGACCAACTCC 770
Query 815 ATCGCAATCATT-TCGAAATTGACTGCCAAGATTGGTTTCTTTATGATCCGGTTCATCCA 873
|||||||||| | | |||||| ||||| |||||||||||||| || | | | |
Sbjct 771 ATCGCAATCACTAT-GAAATTAACTGCGAAGATTGGTTTCTTCAT--T----TA-A-C-- 819
Query 874 AGATTATGCTCATGGGGACGTACCAAGTTCTTGCCGCTGGAGGAACTCCACAAAGCTTCT 933
|| | | |||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 820 -GA-----C-C-TGGGGACGTAATAAGTTTTTGCCGCTGGAGGAACTCCACAAAGCTTCG 871
Query 934 AGGGGATTTCTGGTGAATGATCAGATATATATCGGTGTTGAATTCTTAATTGTATCCACT 993
||||||||||| ||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 872 AGGGGATTTCTAGTGAACGATCAGATATATATCGGTGTTGAGTTCTTAATTGTATCCACT 931
Query 994 ACTGAGTATCTCTGATGCGCATTCACGGGTTTGATC 1029
|||||||||||||||||||||| |||| || ||||
Sbjct 932 ACTGAGTATCTCTGATGCGCATA-ACGGATTCGATC 966
> Ahg482229 jgi|Araly1|482229|fgenesh2_kg.4__1289__AT2G32870.1
Length=1531
Score = 1147 bits (621), Expect = 0.0
Identities = 935/1082 (86%), Gaps = 40/1082 (4%)
Strand=Plus/Plus
Query 15 aaaaa-aaTC-TACTACGGTGTATTATACGACGACCATCATGCTCAAAATGGGTCTAACG 72
||||| || | ||||||||| | | || |||||||||||| |||| |||||||||| ||
Sbjct 196 AAAAAGAACCATACTACGGT-AAAT-TA-GACGACCATCATCCTCATAATGGGTCTACCG 252
Query 73 TCATTTGAAGACGCCATAAAAGAGCAGCTAAAGGAACGAAAAAACGCTCACTTCATGTTG 132
||| |||||||| ||||||||||| |||||||||| || |||||||||||||||||||||
Sbjct 253 TCACTTGAAGACACCATAAAAGAGAAGCTAAAGGACCGCAAAAACGCTCACTTCATGTTG 312
Query 133 GTTGATGGAATGTCGAAGCTACTGACTGAAAAAGTTAACAATTTTCAGTCATTGGATTTC 192
|||||||||||||| |||||||||||||||||||||||||||| ||||||| ||||||||
Sbjct 313 GTTGATGGAATGTCTAAGCTACTGACTGAAAAAGTTAACAATTGTCAGTCAGTGGATTTC 372
Query 193 CAAGTATCTGGTCTCAAATGGAGGTTGCTTATACAAC-CAGCT-GTGGG-AGTAAAAGAT 249
||||| |||||| |||||||||||||| |||||| | | || | ||| || ||||||
Sbjct 373 CAAGTTTCTGGTATCAAATGGAGGTTGGTTATAC-GCTTATCTAG-GGGAAG-AAAAGAC 429
Query 250 TATCTAT-CTGTTGCTGTAT-G-GATCATAGATGAAAAGTGTACCGGGCCTAATTGGGAA 306
|||||| || ||| | | | | ||||| ||||||||||||||||||| |||||||||||
Sbjct 430 CATCTATCCT-TTG-T-TCTCGAGATCACAGATGAAAAGTGTACCGGGTCTAATTGGGAA 486
Query 307 GTCAAATTCAACTTCAAAATCGGCCTACTCCCTCAGACTGGACCTGAATATTTCTACGTC 366
|||||||||||||||||||||||| || ||||||||||||||||||| |||| || |||
Sbjct 487 GTCAAATTCAACTTCAAAATCGGCATAGTCCCTCAGACTGGACCTGATTATTGCTTCGTT 546
Query 367 TCGGTGGGGTGTCACAACGAAAAACAACCTGCTCAAGGGGTAGTCAAATTCATAACACAC 426
| ||||||| ||| ||||||||||||| | ||||||| ||| ||| || ||| |||||
Sbjct 547 TTGGTGGGGCATCAAAACGAAAAACAACGTATTCAAGGGCTAGCCAACTTTATATCACAC 606
Query 427 ACGCAGTTAAAGGAGAGGTTTCTTGTGAACGACAAAGCGGTTTTCTATGCCGAGATAAGC 486
||| | || ||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 607 ACGGATTTGAAGGAGAGGTTTCTTGTGAACGACATAGCGGGTTTCTATGCCGAGATAAGC 666
Query 487 GAAGAAGT-CATACCAAACTTCCTCGTTACTGGTATCCCTCGAACCATGGGGACAGCAGA 545
|| || || ||||||||||| ||||||| ||||||||||||| ||||| ||||| ||
Sbjct 667 ---GATGTCCA-ACCAAACTTCCCCGTTACTCGTATCCCTCGAACAATGGGCACAGCCGA 722
Query 546 ACGCTTTAAACTGATAGAGGTGGCTCGGAACAATTCCAGATTCACCTGGAAGATCACGAA 605
||||||||||||||||||| | ||| || || |||||||||||||||||||||||| |
Sbjct 723 ACGCTTTAAACTGATAGAGTTTTCTCCGAGGAACTCCAGATTCACCTGGAAGATCACGCA 782
Query 606 GTTTTCCTCCTTCAATGGTGAAGAGCATTCGTCTTACGAGTTCACGGTTGGACCACGGAG 665
||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 783 GTTTTCCTCCTTCGATGGTGAAGAGCATTCTTCTTACGAGTTCACGGTTGGACCACGGAG 842
Query 666 ATGGAAACTAGTAATGTACCCAAGAGGAACCGGAGATGGGAAAGGAAACTCGTTGTCTTT 725
||||||||||||||||||||||| ||||| |||||||||||||||||| |||||||||||
Sbjct 843 ATGGAAACTAGTAATGTACCCAAAAGGAAACGGAGATGGGAAAGGAAATTCGTTGTCTTT 902
Query 726 GTATTTGAATGCGTCTAATTACGTCACCAATAATGGTCCAAAGGG-GAGAACATTCGCGG 784
||||||| ||| || |||||||||| || | |||||| ||||| | ||||||| ||
Sbjct 903 GTATTTGTTTGCATCCGATTACGTCAC-AA-A-TGGTCCTAAGGGTG-GAACATTGGCCA 958
Query 785 TCTATAAATTGAGAGTGTTGGACCAACTCCATCGCAATCATT-TCGAAATTGACTGCCA- 842
|||| ||||||||||||||||||||||||||||||||||| | | |||| ||| ||| |
Sbjct 959 TCTACAAATTGAGAGTGTTGGACCAACTCCATCGCAATCACTGT-GAAACTGATTGC-AG 1016
Query 843 AGATTGGTTTCTTTATGATCCGGTTCATCCAA-G-ATTATGCTCATGGGGACGT-ACCAA 899
| ||||||||| |||| |||||||| |||||| | ||| || |||||||||| || ||
Sbjct 1017 ATATTGGTTTCCTTATAATCCGGTTGATCCAATGGATTC--CTTATGGGGACGTCAC-AA 1073
Query 900 GTTCTTGCCGCTGGAGGAACTCCACAAAGCTTCTAGGGGATTTCTGGTGAATGATCAGAT 959
||| ||||||||||||||||||||||| || || | |||||||| ||||| ||||||||
Sbjct 1074 GTTTTTGCCGCTGGAGGAACTCCACAATGCGTCGAAAGGATTTCTAGTGAACGATCAGAT 1133
Query 960 ATATATCGGTGTTGA-ATTCTTAATTGTATCCACTACTGAGTATCTCTGATGCGCATTCA 1018
||||||||||||||| || || |||||||||||||||||||||||||||||||| || |
Sbjct 1134 ATATATCGGTGTTGATAT-CTCAATTGTATCCACTACTGAGTATCTCTGATGCGTTTTAA 1192
Query 1019 CGGGTTTGATCAAGACCACACCAATAAATAGCTCCCGTTGAACCTATCTACCTATTGTTC 1078
|| || ||||||||||||| ||| ||||||||| | ||||||||||||||||| |||
Sbjct 1193 CGAATTAGATCAAGACCACAAAAATGAATAGCTCCTGCTGAACCTATCTACCTATA-TTC 1251
Query 1079 TA 1080
||
Sbjct 1252 TA 1253
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45213779562
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5