BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G32885.1
Length=1793
Score E
Sequences producing significant alignments: (Bits) Value
Ahg933868 jgi|Araly1|933868|scaffold_401856.1 424 2e-117
Ahg933867 jgi|Araly1|933867|scaffold_401855.1 313 4e-84
Ahg934083 jgi|Araly1|934083|scaffold_402071.1 267 3e-70
> Ahg933868 jgi|Araly1|933868|scaffold_401856.1
Length=278
Score = 424 bits (229), Expect = 2e-117
Identities = 260/275 (95%), Gaps = 2/275 (1%)
Strand=Plus/Minus
Query 1352 GAATGCATCATGCATGC--ATGATCAAGCATATATCCTCATCTTGTTGATCACTTTGTAA 1409
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 278 GAATGCATCATGCATGCATATGATCAAGCATATATCCTCATCTTGTTGATCACTTTGTAA 219
Query 1410 ACATCATCCACATCATCGTCGTCGTCTTCTTTCACCGCCTCCACACACCGCTCATTATCG 1469
||||||||||| ||||| ||||||||||||||| ||||||||||||||||||||||||||
Sbjct 218 ACATCATCCACGTCATCATCGTCGTCTTCTTTCGCCGCCTCCACACACCGCTCATTATCG 159
Query 1470 TCCCCGAGGCTGCCATCGCCGCCGCCGCATCCTCCTCTACTGACGTCAGCAGCAGCACCA 1529
|||||||||||||||||||| ||||||||||||||||| ||||||||||||||| || ||
Sbjct 158 TCCCCGAGGCTGCCATCGCCACCGCCGCATCCTCCTCTGCTGACGTCAGCAGCACCAGCA 99
Query 1530 GACTCGACTCTCATGAAGAAATTGCATAGGAGAAGTGTTAAGAAGCAACATATAATAAAT 1589
|| ||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||
Sbjct 98 GAGTCGACTCTCATGAAGAAATTGCATAAGAGAAGTGTTAAGAAGCAACATATAATCAAT 39
Query 1590 TCTCTAGATGCAGCCATGGATCAGACACTTtctct 1624
||||| | ||||||||||||||| |||||||||||
Sbjct 38 TCTCTTGCTGCAGCCATGGATCACACACTTTCTCT 4
> Ahg933867 jgi|Araly1|933867|scaffold_401855.1
Length=262
Score = 313 bits (169), Expect = 4e-84
Identities = 215/238 (90%), Gaps = 0/238 (0%)
Strand=Plus/Plus
Query 573 AAAAATGGGTATATCCAAGAAAACAGTTGTACAATCATTTGCTCTTATAATTATTATATC 632
|||||||| |||||||||||||||| |||| || ||| | ||| |||| |||||||||||
Sbjct 19 AAAAATGGTTATATCCAAGAAAACAATTGTGCAGTCACTCGCTTTTATGATTATTATATC 78
Query 633 TATCGTCATGAGCACAACGGAGGCAAACAGTATAGGCGCTCCAGCTATGCGAGAAGATTT 692
|||||||||||||||||| || ||||| || ||||||| ||| |||||||||||||||||
Sbjct 79 TATCGTCATGAGCACAACCGAAGCAAAAAGCATAGGCGTTCCTGCTATGCGAGAAGATTT 138
Query 693 ACCCAAAGGTTGTGCTCCTGGATCTTCAGCTGGTTGCAAGATGCAACCGGCTAATCCGTA 752
|||||||||||||| |||||| ||| || | |||||||||||||||||||||||||||||
Sbjct 139 ACCCAAAGGTTGTGGTCCTGGGTCTCCACCAGGTTGCAAGATGCAACCGGCTAATCCGTA 198
Query 753 TAAACCAGGTTGCGAAGCTAGCCAAAGATGTCGTGGGGGTTGATACTATGAGATATAA 810
|||||||||||| ||||||||||||||||| ||||| ||||||||||| |||||||||
Sbjct 199 TAAACCAGGTTGTGAAGCTAGCCAAAGATGCCGTGGTGGTTGATACTACGAGATATAA 256
> Ahg934083 jgi|Araly1|934083|scaffold_402071.1
Length=259
Score = 267 bits (144), Expect = 3e-70
Identities = 202/231 (87%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 573 AAAAATGGGTATATCCAAGAAAACAGTTGTACAATCATTTGCTCTTATAATTATTATATC 632
|||||||| ||||||||| |||||| || | |||||||| ||||||||||||||||||||
Sbjct 17 AAAAATGGTTATATCCAAAAAAACAATTATGCAATCATTCGCTCTTATAATTATTATATC 76
Query 633 TATCGTCATGAGCACAACGGAGGCAAACAGTATAGGCGCTCCAGCTATGCGAGAAGATTT 692
|||||||||||||||||| || ||||| | |||||| |||||||||||||||||||
Sbjct 77 TATCGTCATGAGCACAACAGAAGCAAAAACCATAGGCAATCCAGCTATGCGAGAAGATGA 136
Query 693 ACCCAAAGGTTGTGCTCCTGGATCTTCAGCTGGTTGCAAGATGCAACCGGCTAATCCGTA 752
||| || |||||||| ||||| || || | |||||||| ||||||||||||||||| ||
Sbjct 137 ACCTAATGGTTGTGCCCCTGGGTCCCCATCAGGTTGCAAAATGCAACCGGCTAATCCATA 196
Query 753 TAAACCAGGTTGCGAAGCTAGCCAAAGATGTCGTGGGGGTTGATACTATGA 803
||||||||||||||||||||| |||||||| ||||| |||||||| |||||
Sbjct 197 TAAACCAGGTTGCGAAGCTAGTCAAAGATGCCGTGGTGGTTGATAGTATGA 247
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67305462915
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5