BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G32900.1
Length=2583
Score E
Sequences producing significant alignments: (Bits) Value
Ahg933869 jgi|Araly1|933869|scaffold_401857.1 3557 0.0
> Ahg933869 jgi|Araly1|933869|scaffold_401857.1
Length=2273
Score = 3557 bits (1926), Expect = 0.0
Identities = 2163/2279 (95%), Gaps = 9/2279 (0%)
Strand=Plus/Plus
Query 57 ACGACCACCGTCCCTCCGTCATGCCGGAGATAGACGCGTTGTTTGAATCGATCAATGTTC 116
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1 ACGACCACCGTCCCTCCGTCATGCCGGAGATCGACGCGTTGTTTGAATCGATCAATGTTC 60
Query 117 GGGACCTTCTCGCCGGACACGATCTAAACGATCCCACAACTCCGTTATCTGCACCGGATC 176
||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 61 GGGACCTTCTCGCCGGACACGATCTAAACGATCCCACAACTCCGTTATCGGCGCCGGATC 120
Query 177 TCCGTCTCCTCATAAACCGCTTAGAGTCTCATTCTCTGCGGATCAAGTCCAAAGTTCAGT 236
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 121 TCCGTCTCCTCATAAACCGCTTAGAGTCTCATTCCCTGCGGATCAAGTCCAAAGTTCAGT 180
Query 237 CTTATCTCGTCGCTCATCACTCTGATTTCTCGGAGCTATTTTCTCTTTGTCAAGACACCG 296
| || |||||||||||||||||||||||||| ||||| || || ||||||||||||||||
Sbjct 181 CATACCTCGTCGCTCATCACTCTGATTTCTCAGAGCTCTTCTCGCTTTGTCAAGACACCG 240
Query 297 TCTCGAGGACTCGTCTGATCTCCGATGACGTCTCCGATGTCCTACAATTGGTTTCTGACC 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 TCTCGAGGACTCGTCTGATCTCCGATGACGTCTCCGATGTCCTACAATTGGTTTCTGACC 300
Query 357 GTCCGATTGATGTTGAGATACGCAGTGTGGTAGATGAGATAACGGAAAAGACTAAGGAAG 416
|||||||||||||||| || || ||||| || ||||||||||| ||||||||||||||||
Sbjct 301 GTCCGATTGATGTTGAAATTCGTAGTGTAGTGGATGAGATAACCGAAAAGACTAAGGAAG 360
Query 417 TGAAATTGAAAAGAGAATCTCTTGATTTAGTGAATGCGATCGTGGGAATTTGTGAGGCAT 476
|||||||||| |||||||| ||||||||||||| ||||||||| ||||| || |||||||
Sbjct 361 TGAAATTGAAGAGAGAATCGCTTGATTTAGTGAGTGCGATCGTTGGAATCTGCGAGGCAT 420
Query 477 TGCAGGAAACGAAGGAAGCTTTGAAAAATGGACGTTTCAGATTCGCCGCTGAGAGAATCA 536
|||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||
Sbjct 421 TGCAGGAAACGAAGGAAGCTTTGAAAAACGGACGTTTCAAATTCGCCGCTGAGAGAATCA 480
Query 537 GAGAACTT-AAAGTTGTATTGAGAATTGGTGAAGAGGAAGATGGAGAACCTGTGGCTTAC 595
||||| || ||||| |||||||| ||||||||||||||||| ||||||||||| || ||
Sbjct 481 GAGAA-TTGAAAGTCGTATTGAGGATTGGTGAAGAGGAAGAAGGAGAACCTGTTGCCTAT 539
Query 596 GCTTTACTTAGGAAGGAATGGTCTAATTGCTTTGACGAGATTCAAGAGGTGCTTGC-AAA 654
||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 540 GCTTTGCTTAGGAAGGAATGGTCTAATTGCTTTGATGAGATTCAAGAGGTGCTTGCTAAA 599
Query 655 GTTCATGGAGAATGCAGTGCGTTTTGAGCTAGACTCGAGTAGAATCCGGATTAAGTATCA 714
||||||||||||||||||||||| ||||||||||| |||||| | ||||||||||||||
Sbjct 600 -TTCATGGAGAATGCAGTGCGTTTCGAGCTAGACTCTAGTAGACTTCGGATTAAGTATCA 658
Query 715 GCTAAGCGTTGGTGAGACTGCTGGAATCGCTCTTAGTACTGTTCTAGAGGCAATGGAGGT 774
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 659 GCTAAGCGTTGGTGAGACTGCTGGAATCGCTCTTAGTACTGTTCTCGAGGCAATGGAGGT 718
Query 775 GATTGGAATATTAGACTATGGGCTTGCGAAAGCAGCTGACTCAATCTTTAAGCATGTCAT 834
||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 719 GATTGGAATCTTAGACTATGGGCTTGCGAAAGCAGCTGACTCAATCTTCAAGCATGTCAT 778
Query 835 CACTCCAGCTGTAACTCATGCATCTACCTTTGCCGCTGTGGAAGATTTATGTAAATCCGC 894
||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |
Sbjct 779 CACTCCAGCTGTAACTCATGCATCTACCTTTACCGCTGTGGAAGATTTAAGTAAATCCTC 838
Query 895 AGGGGAAGTCACCGAAGCGACACTAAGGCTAGAGCAATCCTCAGATCATAAGTTTGAAGA 954
|||||||||||||||||| ||| ||||||||||||||||||| ||||||||| |||||||
Sbjct 839 AGGGGAAGTCACCGAAGCTACATTAAGGCTAGAGCAATCCTCCGATCATAAGGTTGAAGA 898
Query 955 TGTGGATGGAGATGCAATGTATTCTGGAATTCTTAAGGTTGTTAAGTTCATTTGCAGTTC 1014
|||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 899 TGTGGATGGAGATGCAATATATTCAGGAATTCTTAAGGTTGTTAAGTTCATTTGCAGTTC 958
Query 1015 CTTGTGCTTTGGAAACGTTACATGGATCCATTCTTTTGGGAGGTTGACATGGCCGAGGAT 1074
||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||
Sbjct 959 GTTGTGCTTTGGAAACATTACATGGATCCATTCTTTTGGGAGATTGACATGGCCGAGGAT 1018
Query 1075 ATCAGAGTTAATTATATCTAAATTTCTTTCAAAGGTTGTCCCAGAAGATGCTTCAAAACT 1134
||||||| | |||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1019 ATCAGAGCTGATTATAGCTAAATTTCTTTCAAAGGTTGTCCCAGAAGATGCTTCAAAACT 1078
Query 1135 TGCTGACTTTCAGAAAATTATCGAGCGGACCTCTCAATTCGAAGCCGCTCTAAAGGAACT 1194
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
Sbjct 1079 TGCTGACTTTCAGAAAATTATCGAGCGGACCTCTCAATTCGAAGCAGCTCTAAAGGAATT 1138
Query 1195 GAATTTTGTTTCATCATCTGACGCAGAGAGTAGGCTCAGCAAATATGCTGAAGATGTGGA 1254
||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1139 GAATTTTGTTTCACCATCTGACGCAGAGAGTAGGCTCAGCAAATACGCTGAAGATGTGGA 1198
Query 1255 GGTTCATTTTGCATCTAGAAAGAAGATAGAAATCCTAGCAAAAGCAAGAAATTTGCTGTT 1314
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1199 GGTTCATTTTGCATCTAGAAAGAAGATAGAAATCCTAGCAAAAGCAAGAAATTTGCTGCT 1258
Query 1315 GCAGTGTAACTTTACGATTCCCCAGGATATTGCTATGAGGAATGCCAAGCACATCGTCTG 1374
||| |||||||||||||||||||||| | | | ||| | ||||||||||||| ||
Sbjct 1259 GCAATGTAACTTTACGATTCCCCAGG-TG--GATGTGAATTCTTCCAAGCACATCGTTTG 1315
Query 1375 CTTACTTTTCTCCTCTGAAAGGTGTGTGGTATCTGAAGCTGCATCTCAACTTATGAATTT 1434
|||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1316 CTTACTTTTCTCGTCTGAAAGGTGTGTGGTATCTGAAGCTGCATCTCAACTTATGCATTT 1375
Query 1435 GGTGCATAAGACGCTCGAGGATGTCTGTGTTTCTTCTGCAAGGGTTGCTTCAGAGTTCTA 1494
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1376 GGTGCATAAGACGCTCGAGGATGTCTGTGTTTCTTCTGCAAGGGTTGCTTCAGAGTTCTA 1435
Query 1495 CAACGCTGCTAGAGATTCTATCCTTCTATATGAAGCTGTTGTTCCTGTCAAGCTAGAGAA 1554
|||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1436 CAACGCTGCTCGAGATTCTATCCTTCTATATGAAGCTGTTGTTCCTGTCATGCTAGAGAA 1495
Query 1555 ACAACTCGATGGCCTCAATGAAGCTGCTGTTCTTCTGCACAACGATTGTCTATATTTGTT 1614
||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1496 ACAACTCGATGGCATCAACCAAGCTGCTGTTCTTCTGCACAACGATTGTCTATATTTGTT 1555
Query 1615 CGAAGAGATACTTGGCCTTGCTTTTGAGTATCGTGCTAGCTTCCCTAGCTCCATCAAGGA 1674
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1556 CGAAGAGATACTTGGACTTGCTTTTGAGTATCGTGCTAGCTTCCCTAGCTCCATCAAGGA 1615
Query 1675 GTATGCAGTCTTTGCTGACATAGCCCCAAGATTTAAACTGATGGCCGAAGAAGTTTTGCA 1734
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1616 GTATGCAGTCTTTGCTGACATAGCCCCAAGATTTAAACTGATGGCAGAAGAAGTTTTGCA 1675
Query 1735 AAAACAAGTTCATCTAGTAATTTCAAGTCTGCGAGAGGCTATAGATAGTGCAGATGGATT 1794
|||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 1676 AAAACAAGTTCATCTAGTAATTTCGAGTCTACGAGAGGCTATAGATAGTGCAGATGGATT 1735
Query 1795 TCAGAATACTCATCAAATTAAACAGTTTAAATCTGCAGAATTTAGCATTGATCAGGTTGT 1854
|||||||||||||||||| ||||| ||| |||||||| ||||||||||||| ||||||||
Sbjct 1736 TCAGAATACTCATCAAATGAAACAATTTGAATCTGCAAAATTTAGCATTGAGCAGGTTGT 1795
Query 1855 CTTTAGTCTAAAGAATGTGCATATGATATGGGAGCCAGTCTTACGGCCCAAAACTTACAA 1914
|||||||||| |||| || ||||||||||||||||| |||||||||||||||||||||||
Sbjct 1796 CTTTAGTCTAGAGAAAGTACATATGATATGGGAGCCGGTCTTACGGCCCAAAACTTACAA 1855
Query 1915 GCAAAGCATGTGCGCAGTTTTGGAGTCTGTATTTCGCAGAATAGCTAGAGATATTCTTCT 1974
||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 1856 GCAAAGCATGTGCGCAGTTTTGGAGTCGGTATTTCGCAGAATAGCCAGAGATATTCTTCT 1915
Query 1975 TCTAGACGACATGGCTGCTGACGAAACT-TTCGAGCTACAAAAACTGATTTATCTCATGT 2033
||||||||||||||||||||| |||||| ||| ||||||||| ||||||||||| |||||
Sbjct 1916 TCTAGACGACATGGCTGCTGATGAAACTATTC-AGCTACAAAGACTGATTTATCCCATGT 1974
Query 2034 TGAAGAATCTATCTTCTGTACTCGATTCCGTGAGATCTGCAGATGAGACTTCTCGTCCTC 2093
|| |||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1975 TGGAGAATCTATCTTCTTTACTCGATTCCCTGAGATCTGCAGATGAGACTTCTCGTCCTC 2034
Query 2094 TTGATGATATCATACCATCTTTGCGCAAAACCCGTAAACTAGCAGAACTATTGGATATGC 2153
|||||||| |||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 2035 TTGATGATCTCATACCATCTTTGCGCAAAGCCCGTAAACTAGCAGAATTATTGGATATGC 2094
Query 2154 CTCTCATGTCTATAACTTCAGCTTGGGAAAGCGGGGAGTTATTTAGATGCAATTTCACAA 2213
|||||| |||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 2095 CTCTCAAGTCTATAACTTCAGCTTGGGAAAGTGGGGAGTTATTTAGTTGCAATTTCACAA 2154
Query 2214 GAACAGAGGTACAAGATTTCATCAAAGCTATATTTACAGATTCGCCGCTGAGAAAAGAAT 2273
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2155 GAACAGAGGTACAAGATTTCATCAAAGCTATATTTACAGATTCGCCGCTGAGAAAAGAAT 2214
Query 2274 GCTTATGGAGGATAGACGAGGTTAACCAGTAGATTGGAAATGATAAAACTTaaaaaaaa 2332
|||||||||||||||||||| ||| ||||||||||||||||| |||||||| |||||||
Sbjct 2215 GCTTATGGAGGATAGACGAGTTTAGCCAGTAGATTGGAAATGGTAAAACTTGAAAAAAA 2273
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 97396756465
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5