BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G32905.1
Length=618
Score E
Sequences producing significant alignments: (Bits) Value
Ahg321026 jgi|Araly1|321026|fgenesh1_pm.C_scaffold_4001083 619 6e-177
Ahg933779 jgi|Araly1|933779|scaffold_401767.1 222 2e-57
> Ahg321026 jgi|Araly1|321026|fgenesh1_pm.C_scaffold_4001083
Length=633
Score = 619 bits (335), Expect = 6e-177
Identities = 494/567 (87%), Gaps = 26/567 (5%)
Strand=Plus/Plus
Query 49 AACTTCGAGATGTTGATACAAGTCGCTGTCATGGTTTACGATCATGAGTACGGTACTCAT 108
||||||||||||||| |||| ||||||| ||||||||||||||| ||||| ||||||||
Sbjct 37 AACTTCGAGATGTTGTTACATGTCGCTGCCATGGTTTACGATCAAGAGTATGGTACTCAC 96
Query 109 GACGAAC-ACAAGTCAAAGACCATTGACGAAGATACAGAGACAGAAGCAAGAATCTTTGG 167
|| | || | || |||||||||||||||||||| ||||||| ||||||||||||||||||
Sbjct 97 GA-GGACGAGAAATCAAAGACCATTGACGAAGAAACAGAGATAGAAGCAAGAATCTTTGG 155
Query 168 AGATACAA-TACCTAGAAAGAACAGAACTCACCGATCATCTTCTTCTTCTAACAAGACGA 226
||||| || |||| |||||||||||||| |||||||||||| |||||| | ||
Sbjct 156 AGATA-AAGTACCGAGAAAGAACAGAACCCACCGATCATCTCCTTCTT-T------TCG- 206
Query 227 TAACACCATGGACGCGTGTGATCGAACAACAGAGATCATCTGAACTACAAAACCCTAA-C 285
|| | |||||||| ||||||||||||||||||||| |||||||||||||||||
Sbjct 207 ---CA--A--GACGCGTGCGATCGAACAACAGAGATCATCGGAACTACAAAACCCTAATA 259
Query 286 CCGGAATCTGAACCTTCTTCTTCCTCTTGCGTTACCCACTTCAAGAAACGTCGCCACATG 345
|| ||||| |||||||||||||| |||||||||||||| ||||||||||||| ||||||
Sbjct 260 CC-GAATCGGAACCTTCTTCTTCATCTTGCGTTACCCAGTTCAAGAAACGTCTTCACATG 318
Query 346 GACA--A-AGAAGAGAGTACTCGCAAGAGACTCAAAATCGATAGTCCTTTAGAGGTGGAA 402
||| | |||||||| | || ||||| || |||||||||| |||||||||||||||||
Sbjct 319 AACACCATGGAAGAGAGAAGTCTCAAGAAACCCAAAATCGATGGTCCTTTAGAGGTGGAA 378
Query 403 CCAATTCAAAC-ATCACCACCGGAATGGCTTTTGAAAGTAATGAAGAGAGAAGAGAACAG 461
||||||||||| | |||||||||| ||||||||||| || |||| ||||||||||||| |
Sbjct 379 CCAATTCAAACGA-CACCACCGGATTGGCTTTTGAACGTGATGAGGAGAGAAGAGAACGG 437
Query 462 CTACAATCCAAAATTGATCTCAACGAGAAAACTCTATAAGACTGATCTCGCTAGTCTTCA 521
||||||||||||| ||||||||||||| ||||| | ||||||||| ||||| ||||||||
Sbjct 438 CTACAATCCAAAACTGATCTCAACGAGGAAACTGTTTAAGACTGACCTCGCCAGTCTTCA 497
Query 522 AGCACGTCTCTCAGTACCTTTTAAACAAGTGAAAAGTCCAGACTTTTTAACAGAGGAAGA 581
||||||||||||||||||||||| |||||||||| |||||||||||| |||||||||||
Sbjct 498 AGCACGTCTCTCAGTACCTTTTAGGCAAGTGAAAAATCCAGACTTTTTGACAGAGGAAGA 557
Query 582 AACAAGAATCATAAAGGAACAAGCTTT 608
||||||||||||||| |||||||||||
Sbjct 558 AACAAGAATCATAAATGAACAAGCTTT 584
> Ahg933779 jgi|Araly1|933779|scaffold_401767.1
Length=1048
Score = 222 bits (120), Expect = 2e-57
Identities = 209/252 (83%), Gaps = 6/252 (2%)
Strand=Plus/Plus
Query 352 GAAGAGAGTACTCGCAAGAGACTCAAAATCGATAGTCCTTTAGAGGTGGAACCAATTCAA 411
||| |||| | ||| |||| || |||| ||| ||||||||||||||||||||||||||||
Sbjct 429 GAAAAGAGAAGTCGAAAGAAACGCAAAGTCGTTAGTCCTTTAGAGGTGGAACCAATTCAA 488
Query 412 ACATCACCACCGGAATGGCTTTTGAAAGTAATGAAGAGAGAAGAGAACAGCTACAATCCA 471
||| | ||| |||| ||||||||||| || |||| ||||||||||||| ||||||||||
Sbjct 489 ACAACTCCATCGGAGTGGCTTTTGAACGTGATGAGGAGAGAAGAGAACGGCTACAATCCG 548
Query 472 AAATTGATCTCAACGAGAAAACTCTATAAGACTGATCTC-GCTAGTCTTCAAGCACGTCT 530
|| ||||||||||||| |||||| | ||||||||||| | | | |||||||||||
Sbjct 549 AAGCTGATCTCAACGAGGCAACTCTTTCAGACTGATCTCAGA-ACACACCAAGCACGTCT 607
Query 531 CTCAGTACCTTTTAAACAAGTGAA-AAGTCCAGACTTTTTAACAGAGGAA-GAAACAAGA 588
||||||||| ||||| || || | || ||| |||||||| |||||| || || ||||||
Sbjct 608 CTCAGTACCCTTTAAGCAGGTTATCAA-TCCGGACTTTTTGACAGAG-AATGAGACAAGA 665
Query 589 ATCATAAAGGAA 600
|||||||| |||
Sbjct 666 ATCATAAATGAA 677
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 22606889781
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5