BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G32910.1
Length=2406
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482233 jgi|Araly1|482233|fgenesh2_kg.4__1293__AT2G32910.1 3042 0.0
> Ahg482233 jgi|Araly1|482233|fgenesh2_kg.4__1293__AT2G32910.1
Length=2253
Score = 3042 bits (1647), Expect = 0.0
Identities = 2021/2195 (92%), Gaps = 52/2195 (2%)
Strand=Plus/Plus
Query 193 TCCTTGAAAATGGAACTACAAGATGCTATGAATGATGAGAATGAGAAAGCCCCTGAGGCT 252
|||||||||||||| || ||||||| || ||||||||||||||||||||| |||||||||
Sbjct 92 TCCTTGAAAATGGAGCTGCAAGATGTTAAGAATGATGAGAATGAGAAAGCTCCTGAGGCT 151
Query 253 TCGGTGGTT-CAGAATGATGAAGTTTCCGGGAACAATGGGGATGTAGTGGTTGAAGCTGA 311
||||||||| | ||||||||||||| ||||||| |||||||| || |||||| |||||||
Sbjct 152 TCGGTGGTTGC-GAATGATGAAGTTGCCGGGAATAATGGGGAAGTGGTGGTTCAAGCTGA 210
Query 312 GGAAAAGGATGGGAATGAGGTTGTAGAACCCGTTGATTCAGGAAAAA-GTAAGGCAGATG 370
||||||||||| ||||||||||||| || |||||||| | |||||| ||||||||||||
Sbjct 211 GGAAAAGGATGTGAATGAGGTTGTACAAACCGTTGATGGA-GAAAAATGTAAGGCAGATG 269
Query 371 ACGAGTTTGTTGAAAGTCT-GTTGGATACCAATCAGGATTTGGCTA-CCTTCAAAA-TAC 427
||||||||||||| | | | | |||||||||||||||||||||| | |||| |||| ||
Sbjct 270 ACGAGTTTGTTGAGACTTTAG-TGGATACCAATCAGGATTTGGC-AGCCTT-AAAAGCAC 326
Query 428 CGGTAGAGGAAAATGATACGGAAAATGTGACTGTTGAAGAACCTTCTCTTCCTGCCTCTG 487
|| | | |||||||||| | |||||||| |||||||||||||| ||||||| ||| ||||
Sbjct 327 CGCTGGCGGAAAATGATGCAGAAAATGTTACTGTTGAAGAACCCTCTCTTCTTGCTTCTG 386
Query 488 TTGAAGCAACTTCTTCTGGAATGAAAAAGCCTCAGGGTTTACCAGCgaaaactaaaattg 547
|||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||
Sbjct 387 TTGAAGCAACTTCTTCTGGAATGACAAAGCCACAGGGTTTACCAGCGAAAACTAAAATTG 446
Query 548 ttaagaaagtaaagaagctggtaaaaaggaaaattata-aaagGCACTGCTGCTCAGGTG 606
|||| |||||||||||||| ||||| |||||||||| | | |||||||||| || |
Sbjct 447 TTAAAAAAGTAAAGAAGCTAGTAAAGAGGAAAATTA-AGAGAGGCACTGCT--TC---T- 499
Query 607 GCTGGTGAGGAGAATGTCATCAAGGAAGGTGAACAAAGTGGAGAGCCTTCTCTTGGCGAA 666
| | | | || | | ||||||||||||| |||||||||||||||||||
Sbjct 500 -C-----A-G-G--TGGC-T-------GGTGAACAAAGTGCAGAGCCTTCTCTTGGCGAA 541
Query 667 AGCGAAAAGGACAAAGATTCAGAACCCTATCTTGGAGGAAACGATATGGAATTTCAGAAA 726
|||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||
Sbjct 542 AGCGAAAAGGACAAAGATTCAGTACCCTATCTTGGAGGAAATGATATGGAATTTCAGAAA 601
Query 727 GAA-T--------TAGCAGTAGCTACTCAACCTGCAGTTGATGTTAAAGTTGTTGGAGGG 777
||| | ||||||||||| |||||||||||| |||||||||||||||||||||
Sbjct 602 GAATTAGAAGAACTAGCAGTAGCTCCTCAACCTGCAGATGATGTTAAAGTTGTTGGAGGC 661
Query 778 GAGCCTTCTGGTAAGGAAACACTAAAAGAGGTAAAGGGAAAAGCTAAGAGACAAAGGGaa 837
|| ||||||||||||||||||||||||||||||||||||| ||||||||| |||||||
Sbjct 662 GAACCTTCTGGTAAGGAAACACTAAAAGAGGTAAAGGGAAGAGCTAAGAGGCAAAGGGGG 721
Query 838 aaaaaaTTCAAAGGTACTCTTGCTCAGGGGATGGATAAAGAGAGTGCAATTGATAAGAGA 897
|||||||||||||| |||||||||||||||| ||||||||||| ||||| ||||||||||
Sbjct 722 AAAAAATTCAAAGGGACTCTTGCTCAGGGGACGGATAAAGAGAATGCAACTGATAAGAGA 781
Query 898 GACGTCGGAGCTTCTCCAGGAGGAAACTTGATCGTAGCTAAGAAAGCTATTGACGGTTCT 957
|| ||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||
Sbjct 782 GATGTCGGAGCTTCTCCAGGAGGAAACTTGATCGAAGCTAAGAAAGCTATTGATGGTTCT 841
Query 958 GTAGAAGCCAAAACTGGCTTGACTGAAGACAAGAGACGCAAAAGGAAGAGACCA-ACAAA 1016
||||||||||||||||||||| ||||||||||||||||||||||||||||| || | |||
Sbjct 842 GTAGAAGCCAAAACTGGCTTGGCTGAAGACAAGAGACGCAAAAGGAAGAGA-CAGAGAAA 900
Query 1017 ACAGGTTAGAGATTCAAACAAGAAACTTAGGCAAGATGTAGTAGCTGGTGCTGATACAAC 1076
|||||||| ||||||||||||||||| |||| ||||||||||||||| ||||||| ||||
Sbjct 901 ACAGGTTATAGATTCAAACAAGAAACCTAGGGAAGATGTAGTAGCTGCTGCTGATGCAAC 960
Query 1077 AGAACAGGGAATGGAAGAGAGGAAAGAGCAGCCG-GTTGACCCTGAGAAAAGAGAAATGG 1135
|||||| ||||||||||||||||||||||| || |||||||||| |||||||||||| |
Sbjct 961 AGAACAAAGAATGGAAGAGAGGAAAGAGCAG-CGTGTTGACCCTGGGAAAAGAGAAATTG 1019
Query 1136 ATGGGCCTGGGAAAGTAAAGATTGGTGGATTGATCTTCATGTGCAATACAAAAACTAGAC 1195
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1020 ATGGGCATGGGAAAGTAAAGATTGGTGGATTGATCTTCATGTGCAATACAAAAACTAGAC 1079
Query 1196 CCGATTGTTTTCGGTTCAGTGTAATGGGTGTACAAGAGAAAAGGAAGGATTTTGTCAAGG 1255
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
Sbjct 1080 CCGATTGTTTTCGGTTCAGTGTGATGGGTGTACAAGAGAAAAGGAAGGATTTTGTCATGA 1139
Query 1256 GTATCAAGCCTGGGCTTAAGCTTTTTCTTTATGATTATGATCTCAAACTCCTCTATGGAA 1315
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1140 GTATCAAGCCTGGGCTTAAGCTTTTTCTTTATGACTATGATCTCAAACTCCTCTATGGAA 1199
Query 1316 TTTTTGAAGCATCCTCTGCTGGTGGTATGAAACTTGAGCGCAATGCTTTTGGTGGATCCT 1375
| |||||||||||||||| ||||| |||||||| |||||||||||||||||||||||||
Sbjct 1200 TATTTGAAGCATCCTCTGAGGGTGGGATGAAACTCGAGCGCAATGCTTTTGGTGGATCCT 1259
Query 1376 TTCCTGCTCAGGTGCGCTTTAAGGTTTTTAGTGATTGCATCCCATTGGCTGAGAGCCAAT 1435
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1260 TTCCTGCTCAGGTGCGCTTTAAGATTTTTAGTGATTGCATCCCATTGGCTGAGAGCCAAT 1319
Query 1436 TCAAGAAAGCAATCATA-GAGAACTACAATAATAAAAACAAGTTCAAAACAGAATTGACT 1494
| ||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1320 TTAAGAAAGCAATCA-AGGAGAACTACAATAATAAAAACAAGTTCAAAACAGAATTGACT 1378
Query 1495 CATAAGCAGGTATTTAAGCTTAAAAAGCTTTTTCGGCCAGCTGCGATCCCTGCACAAGTT 1554
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1379 CATAAGCAGGTAATTAAGCTTAAAAAGCTTTTTCGGCCAGCTGCGATCCCTGCACAAGTT 1438
Query 1555 ACCCACACCCAGCAAATCCCTGTTCCTCGTGATACTGACAGGAAAAGATCTGATAGAGAC 1614
|||||||||||||||||||||| ||||||| | ||||||| ||||||||||||||||||
Sbjct 1439 TCCCACACCCAGCAAATCCCTGTGCCTCGTGGTGCTGACAGCAAAAGATCTGATAGAGAC 1498
Query 1615 CGGTATGCCCCTGGTAGCAGTAGGGGTCACCCAACACGCAAACATGAAAGAAGACGTGCT 1674
||||||||||||||||||||||||||||||| || |||| |||||||||||||||||||
Sbjct 1499 CGGTATGCCCCTGGTAGCAGTAGGGGTCACCTGACCCGCACACATGAAAGAAGACGTGCT 1558
Query 1675 TCACCTCCTCCACGCAGAGAAGAACAACCGCGTGATTTATATCTTAGTGAAAGGGAGTAT 1734
|||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 1559 TCACCTCCTCCACGCAGAGAAGAACAACCGCGTGATTTTTATCTTAGTGAAAGAGAGTAT 1618
Query 1735 CGAACATATGGCTTGAGAGGAGGAGAAACAACCCAGCATTACCAAATTCCACCTCCAGAA 1794
||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||
Sbjct 1619 CGAACATATGGCTTGAGAGGAGGGGAAACAACCCAGCATTACCAAATTGCACCTCCAGAA 1678
Query 1795 TCCTCTTCTTCTTACCACATTGTCAACCGAGACCGTGTTCATTTGGATTCTTACCGTTCA 1854
|| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1679 TCTTCTTCTTCTTACCACATTGTCAACCGAGACCGTGTTTGTTTGGATTCTTACCGTTCA 1738
Query 1855 TCTATGGACCATGACCGGCTTTTGAGACAAGCAGAGATTGAGAGGCATGACCGTAGGGAA 1914
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1739 TCTATGGACCATGACCGGCTTTTGAGACAAGCAGAGATTGAGAGGCATGACCGTAGGGAA 1798
Query 1915 GTTCGTCACCCTCATTTGTCTGAGAGAGACTACCAGACGTATGATCATCTTACTTCTAGA 1974
|||||||| |||||||||||||| ||||||||||| |||||||||||||||| |||||||
Sbjct 1799 GTTCGTCATCCTCATTTGTCTGAAAGAGACTACCACACGTATGATCATCTTAGTTCTAGA 1858
Query 1975 CGGGAAATCTTGGTTCGAAACTCGCCTGACCCACCAGATTCAGCGGTTACTCTGGATTCC 2034
||||||||||||| ||||||||| || |||||||||| |||||| ||| ||||||| |||
Sbjct 1859 CGGGAAATCTTGGGTCGAAACTCACCCGACCCACCAGCTTCAGCAGTTGCTCTGGACTCC 1918
Query 2035 TACAGGAGAGATCCGTATTACATTTGTGAGCGCCATGCTCTTGAAAGACCACCAAGGACA 2094
||||||||| ||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 1919 TACAGGAGATATCCGTATTACATTTATGAGCACCATGCTCTTGAAAGACCACCAAGGACA 1978
Query 2095 TACATGGTTTCTCCAGGTAGACAAGATGATGACCTGTATTCCCGGTATGTAACACCGGAT 2154
||||||| | ||||||| ||| |||||||||||||||||||||||||||| |||||||||
Sbjct 1979 TACATGGCTGCTCCAGGAAGAGAAGATGATGACCTGTATTCCCGGTATGTTACACCGGAT 2038
Query 2155 TCATTGGCTGAGTACTACCGATCATCACAAAGATACCCAAGCGTAACTGAACCTGAGCTT 2214
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2039 TCATTGGCTGAGTACTACCGATCATCACAAAGATACCCAAGCGTAACTGAACCTGAGCTT 2098
Query 2215 CCGCCTTCGTTAGTAACATCCCGGTATGCTTATTCTCGGTCTTTGCCTTATTCTCACCGC 2274
||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 2099 CCGCCTTCGTTAGTAACATCCCGGTATGCGTATTCACGGTCTTTGCCTTATTCTCACCGC 2158
Query 2275 TGAAATCAGAATGTGTAATTCTCCTATTCCTTTGAATTTATCTGATGTTTAATGT-ATCT 2333
|||||||||| |||||||||||||| | |||||||||||||||||||||| |||| || |
Sbjct 2159 TGAAATCAGATTGTGTAATTCTCCTCTCCCTTTGAATTTATCTGATGTTTCATGTGATGT 2218
Query 2334 TGGATATGGATACTAAAGAGTTGCTGCCAAAGGGT 2368
||||||||||||||||||| |||| || |||||||
Sbjct 2219 TGGATATGGATACTAAAGATTTGCAGCAAAAGGGT 2253
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 90654783100
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5