BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G32920.1
Length=1573
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482234 jgi|Araly1|482234|fgenesh2_kg.4__1294__AT2G32920.1 2320 0.0
Ahg945355 jgi|Araly1|945355|scaffold_701584.1 78.7 1e-13
> Ahg482234 jgi|Araly1|482234|fgenesh2_kg.4__1294__AT2G32920.1
Length=1469
Score = 2320 bits (1256), Expect = 0.0
Identities = 1407/1479 (95%), Gaps = 13/1479 (1%)
Strand=Plus/Plus
Query 13 gatacaattttacagaagaaagtgaaaagaaagagagaaaggggaagaagaaaaaTGTAT 72
|||||||||||| |||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 1 GATACAATTTTATAGAAGAAAGTGAAAAG-AAGAGAGAAAGGGGAAGAAG-AAAATGTAT 58
Query 73 AAATCACCATTAACGTTGCTCACACTTCTTACTATTTGTTTTGGATTCTTCGATCTCAGC 132
||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||| ||
Sbjct 59 AAATCACCATTAACGTTGCTCACGCTTCTTACTCTTTGTTTTGGATTCTTCGATCTCGGC 118
Query 133 AGTGCTCTTTATGGATCTTCGTCACCTGTGGTTCAGCTCACTGCTTCTAACTTTAAGTCC 192
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 119 AGTGCTCTTTATGGATCTTCGTCACCTGTGGTTCAGCTCACTGCTTCTAACTTCAAGTCC 178
Query 193 AAGGTTCTTAATTCAAATGGAGTTGTTTTGGTAGAGTTCTTTGCACCATGGTGTGGTCAT 252
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 179 AAGGTTCTTAATTCAAATGGAGTTGTTTTGGTAGAGTTCTTTGCACCATGGTGTGGTCAT 238
Query 253 TGCAAAGCTCTAACACCTACATGGGAGAAAGTGGCTAATATTCTGAAAGGAGTTGCTACT 312
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 239 TGCAAAGCTCTAACACCTACATGGGAGAAAGTGGCTAATATTCTCAAAGGAGTTGCTACT 298
Query 313 GTGGCTGCAATTGATGCAGATGCTCATCAGTCTGCCGCGCAGGATTATGGTATTAAAGGT 372
||||| |||||||| ||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 299 GTGGCAGCAATTGACGCAGATGCTCACCAGTCTGCCGCGCAGGATTATGGTATCAAAGGT 358
Query 373 TTCCCAACAATTAAGGTTTTTGTTCCTGGAAAGGCTCCAATCGATTACCAAGGAGCAAGA 432
|||||||| |||||||| ||||||||||||||||||||||| ||||||||||||| ||||
Sbjct 359 TTCCCAACTATTAAGGTCTTTGTTCCTGGAAAGGCTCCAATTGATTACCAAGGAGAAAGA 418
Query 433 GATGCCAAATCCATTGCTAATTTTGCTTATAAGCAGATCAAGGGTCTTTTGAGTGACCGT 492
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 419 GATGCCAAATCCATTGCTAATTTTGCTTACAAGCAGATCAAGGGTCTTTTGAGTGACCGT 478
Query 493 TTGGAAGGCAAAAGTAAACCAACTGGAGGAGGATCTAAAG-AAAAGAAATCTGAACCTAG 551
||||||||||||||||||||||||||||||||| | |||| |||||||||||||||||||
Sbjct 479 TTGGAAGGCAAAAGTAAACCAACTGGAGGAGGAGC-AAAGGAAAAGAAATCTGAACCTAG 537
Query 552 TGCATCTGTGGAACTGAACGCTAGCAATTTTGATGATTTGGTCATCGAAAGCAATGAACT 611
|||||||||||||||||||||| | ||||||||| | |||||||||||||||||||||||
Sbjct 538 TGCATCTGTGGAACTGAACGCTGGAAATTTTGATCAGTTGGTCATCGAAAGCAATGAACT 597
Query 612 TTGGATCGTTGAGTTTTTTGCACCTTGGTGTGGACATTGCAAAAAGCTTGCCCCGGAGTG 671
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 598 TTGGATCGTTGAGTTTTTTGCACCTTGGTGTGGACACTGCAAAAAGCTTGCCCCGGAGTG 657
Query 672 GAAGAGGGCTGCAAAAAATTTGCAGGGAAAGGTGAAATTAGGTCATGTCAATTGTGATGT 731
||| | ||||||||||||||||||||||||||||||| |||||||||||||||| |||||
Sbjct 658 GAAAAAGGCTGCAAAAAATTTGCAGGGAAAGGTGAAACTAGGTCATGTCAATTGCGATGT 717
Query 732 TGAGCAGTCGATAATGAGCAGATTCAAAGTTCAAGGATTCCCTACAATTTTGGTATTTGG 791
||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 718 CGAGCAGTCGATAATGAGCAGATTCAAAGTGCAAGGATTCCCTACGATTTTGGTATTTGG 777
Query 792 TCCAGACAAAAGTAGTCCATATCCTTACGAGGGTGCTAGATCTGCTTCAGCGATAGAATC 851
|||||||||||| |||||||||||||| |||||||| || ||||| ||||||||||||||
Sbjct 778 TCCAGACAAAAGCAGTCCATATCCTTATGAGGGTGCCAGGTCTGCGTCAGCGATAGAATC 837
Query 852 TTTTGCTTCTGAACTTGTGGAATCCAGTGCTGGCCCTGTTGAAGTGACTGAACTAACTGG 911
|||||| |||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 838 TTTTGCGTCTGAACTTGTGGAATCCAGTGCTGGCCCTGTTGAAGTAACCGAACTAACTGG 897
Query 912 ACCGGATGTCATGGAAAAGAAGTGTGGTTCTGCTGCTATTTGCTTTATCTCTTTCTTACC 971
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 898 GCCGGATGTCATGGAAAAGAAGTGTGGTTCTGCTGCTATTTGCTTTATCTCTTTCTTACC 957
Query 972 TGACATTCTTGACTCCAAAGCTGAAGGAAGGAATAAGTACCTCGAGATGTTATTATCAGT 1031
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 958 TGACATTCTTGACTCCAAAGCTGAAGGAAGGAACAAGTACCTCGAGATGTTATTATCAGT 1017
Query 1032 TGCAGAGAAGTTTAAGAAGCAGCCTTACAGTTTTATGTGGGTGGCGGCTGTAACTCAAAT 1091
||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 1018 TGCAGAGAAGTTTAAGAAGCATCCTTACAGTTTTATGTGGGTGGCGGCGGTAACTCAACC 1077
Query 1092 GGATTTGGAGAAGCGAGTTAATGTAGGAGGATACGGTTATCCAGCAATGGTAGCCATGAA 1151
|||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 1078 GGATTTGGAGAAGCGAGTTAATGTGGGGGGATACGGTTATCCAGCAATGGTAGCCATGAA 1137
Query 1152 TGTGAAGAAAGGAGTATATGCTCCTCTTAAAAGCGCCTTTGAGCTTCAACACCTCTTAGA 1211
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1138 TGTGAAGAAAGGAGTATATGCTCCTCTTAAAAGCGCCTTTGAGCTTCAACACCTCTTAGA 1197
Query 1212 ATTTGTGAAAGATGCTGGAACCGGTGGAAAAGGAAATGTGCCAATGAATGGAACACCAGA 1271
|||||| ||||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 1198 ATTTGTCAAAGATGCTGGGACCGGTGGGAAAGGAAATGTGCCAATGAATGGAACACCAGA 1257
Query 1272 GATCGTGAAGACAAAGG-AGTGGGATGGTAAAGATGGAGAGTTGATTGAGGAAGATGAAT 1330
||||||||||||||||| | ||||||||||||||||||||| ||||||||||||||||||
Sbjct 1258 GATCGTGAAGACAAAGGCA-TGGGATGGTAAAGATGGAGAGCTGATTGAGGAAGATGAAT 1316
Query 1331 TCTCACTTGATGAGCTCATGGGAGGTGATGATGCTGTTGGTTCTAAGGATGAGTTGTGAA 1390
||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1317 TCTCACTTGATGAACTCATGGGAGGTGATGATGCTGTTGGTCCTAAGGATGAGTTGTGAA 1376
Query 1391 GAATCCAAGGGGATTTTGCTACTTTTGGGATCTGAACCGCTGAATGTATTTCACCCtttt 1450
||||||||| |||||| |||||||||||||| | ||||||||||||||||||||
Sbjct 1377 GAATCCAAGTTGATTTTACTACTTTTGGGATC----CT--TGAATGTATTTCACCCTTTT 1430
Query 1451 ttatttttGAAAAGAAA-GTAAGAGCATTTCAAGAGATA 1488
| |||| |||||||| | |||||||||||||||||||
Sbjct 1431 ATGTTTTCCAAAAGAAAAGCAAGAGCATTTCAAGAGATA 1469
> Ahg945355 jgi|Araly1|945355|scaffold_701584.1
Length=385
Score = 78.7 bits (42), Expect = 1e-13
Identities = 46/48 (96%), Gaps = 0/48 (0%)
Strand=Plus/Minus
Query 197 TTCTTAATTCAAATGGAGTTGTTTTGGTAGAGTTCTTTGCACCATGGT 244
|||||||||| |||||| ||||||||||||||||||||||||||||||
Sbjct 201 TTCTTAATTCTAATGGATTTGTTTTGGTAGAGTTCTTTGCACCATGGT 154
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58925609015
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5