BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G32930.2
Length=1998
Score E
Sequences producing significant alignments: (Bits) Value
Ahg345050 jgi|Araly1|345050|fgenesh1_pg.C_scaffold_4001392 1888 0.0
Ahg910175 jgi|Araly1|910175|Al_scaffold_0001_429 520 2e-146
> Ahg345050 jgi|Araly1|345050|fgenesh1_pg.C_scaffold_4001392
Length=1383
Score = 1888 bits (1022), Expect = 0.0
Identities = 1258/1365 (92%), Gaps = 43/1365 (3%)
Strand=Plus/Plus
Query 539 ATGTCGGAAACTCAGCAGCAGGTTCAGAACTCTACTGGGTCGATTCGATCTCCCGACAAA 598
||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1 ATGTCAGAAACTCAGCAGCAGGTTCAGAACTCTACTGGGTCGATTCGATCTCCCGAGAAA 60
Query 599 ATTGAAGATACCTTCAGGAGGATGAAAGTTAATGAAGACAATATGGAGCAATCTAGTCCA 658
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 ATTCAAGATACCTTCAGGAGGATGAAAGTTAATGAAGACAATATGGAGCAATCTAGTCCA 120
Query 659 TATCCTGATCGTCCTGGTGAGCGAGATTGCCAGTTCTTTCTGAGAACTGGTCAGTGTGGC 718
|||||||||||||| |||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 121 TATCCTGATCGTCCCGGTGAGCGAGATTGTCAGTTCTTTCTGAGAACTGGGCAGTGTGGC 180
Query 719 TATGGAAACTCTTGTCGATACAATCATCCTCTTACTAATCTTCCACAGGGTATTATTTAT 778
||||||||| | ||||| |||||||| ||||||||| |||||||||||||| ||||||||
Sbjct 181 TATGGAAACACCTGTCGGTACAATCACCCTCTTACTCATCTTCCACAGGGTGTTATTTAT 240
Query 779 TACAGAGACCAATTGCCTGAGA-GAGTTGGACAGCCTGAC--T--G-------TG-AGAC 825
|||| ||||||||||||||||| || |||||||||||||| | | || ||||
Sbjct 241 TACAAAGACCAATTGCCTGAGAGGA-TTGGACAGCCTGACTGTGAGTATTTTCTGAAGAC 299
Query 826 AGGAGCCTGTAAGTATGGCCCAACATGTAAATATCACCACCCTAAA-GACAGGAATGGTG 884
|||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| |
Sbjct 300 AGGAGCCTGTAAGTATGGCCCAACATGTAAATATCACCACCC-AAAGGACAGGAATGGAG 358
Query 885 CTGGACCCGTGCTGTTCAATGTTCTCGGTTTGCCTATGCGGCAGGGTGAGAAGCCATGTC 944
||||||||||||||||||||||||||||||| |||||||| |||||||||||| |||| |
Sbjct 359 CTGGACCCGTGCTGTTCAATGTTCTCGGTTTTCCTATGCGACAGGGTGAGAAGTCATGCC 418
Query 945 CATATTACATGCAGACAGGATTGTGTCGATTCGGAGTTGCCTGCAAATTCCATCATCCTC 1004
| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 419 CGTATTACATGCAGACAGGATTGTGTCGATTCGGGGTTGCCTGCAAATTCCATCATCCTC 478
Query 1005 ATCCTCATTCTCAGCCTTCTAATGGCCACTCTGCATATGCAATGTCCAGCTTTCCGTCTG 1064
| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 A---TC---CTCAGCCTTCTAATGGCCACTCTGCATATGCAATGTCCAGCTTTCCGTCTG 532
Query 1065 TTGGTTTTCCTTATGCCAGTGGAATGACAATGGTGTCTTTGCCTCCTGCAACATATGGAG 1124
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 533 TTGGTTTTCCTTATGCCAGTGGAATGACAATGGTGCCTTTGCCTCCTGCAACATATGGAG 592
Query 1125 CTATTCCACGTCCTCAAGTTCCTCAGTCTCAGGCCTATATGCCCTACATGGTTGCACCCT 1184
|||| ||||||||||||||||||||||||||||||||||||||| |||||||||||| |
Sbjct 593 CTATGGCACGTCCTCAAGTTCCTCAGTCTCAGGCCTATATGCCCTTCATGGTTGCACCTT 652
Query 1185 CCCAAGGCCTTTTACCTCCTCAAGGCTGGGCCACTTACATGACTGCATCTAACCCCATTT 1244
||||||||||| | ||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 653 CCCAAGGCCTTATGCCTCCTCAAGGCTGGGCCACTTACATGGCTGCATCTAACCCCATTT 712
Query 1245 ACAATATGAAAACTCAACTCGACTCCAGTTCTAGCGCATCGGTGGCTGTGACCGTGACAT 1304
||| | ||||| ||||||| |||||||||||||| ||||||||| ||||| |||||||||
Sbjct 713 ACAGTGTGAAAGCTCAACTTGACTCCAGTTCTAGTGCATCGGTGCCTGTGGCCGTGACAT 772
Query 1305 CACATCATCACAGTTTTTCTGAAAGAGCTGAATGTAGGTTTTTTATGAACACTGGAACTT 1364
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 773 CACATCATCACAGTTTTTCTGAAAGAGCTGAATGTAGGTTTTTTATGAACACCGGAACAT 832
Query 1365 GTAAATATGGTGATGATTGCAAATACAGTCATCCGAAAGAAAGATTGTTACAATCACCAC 1424
|||||||||| |||||||||||||||| ||||||||||||||| ||||||||||||||||
Sbjct 833 GTAAATATGGAGATGATTGCAAATACATTCATCCGAAAGAAAGGTTGTTACAATCACCAC 892
Query 1425 CAACTCTCTTGAACCCTATTGTTCTTCCAGCAAGACCAGGACAGCCAGCATGTGGTAACT 1484
||| |||||||||||||||||| ||||| |||||||||||||| ||||||||||||||||
Sbjct 893 CAAATCTCTTGAACCCTATTGTACTTCCCGCAAGACCAGGACAACCAGCATGTGGTAACT 952
Query 1485 TCAAGGCCTACGGATTTTGCAAGTTTGGAGCAAACTGCAAATTTGATCACTCAATGCTGC 1544
| |||||||||||||| |||||||||||||||| ||||||||||||||||||||||| |
Sbjct 953 TTAAGGCCTACGGATTCTGCAAGTTTGGAGCAAGCTGCAAATTTGATCACTCAATGCCAC 1012
Query 1545 TAAACCCTTATAACAATACGGGCTTGGCCATGTCTTCTCTGCCTACTCCTTATCCTTATG 1604
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1013 TAAACCCTTATAACAATACGGGCTTGGCCATGTCTTCTCTGCCTACTCCTAATCCTTATG 1072
Query 1605 CTCCACCTGTTTCAACTAATTTGAGGATCTCATCGCCACCAAGCC-CCTCTGATAT-GAC 1662
|||||||||||||||||||| |||||||||||||||||||||||| || ||||| | |||
Sbjct 1073 CTCCACCTGTTTCAACTAATCTGAGGATCTCATCGCCACCAAGCCGCC-CTGAT-TCGAC 1130
Query 1663 TACCCTATCCAATGGTAAACCCGCTGCTGCAGA-AGCTCAAAGCTTGGAGACTGAGAAAC 1721
||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct 1131 TACCCTATCCAATGGTAAACCCGCTGCTGCAGAGA-CTCAAAGCTTGGAGACTGAGAAAC 1189
Query 1722 AAGACGATAGTCCAACAGAACCAGAAAAATCAGAAGTGGAGGACTCATTGCCACCAAACG 1781
||||||||||||| || |||||||||| ||||||||| |||||||||||||||||| |
Sbjct 1190 AAGACGATAGTCCTGCACAACCAGAAAAGTCAGAAGTGCAGGACTCATTGCCACCAAGCC 1249
Query 1782 GCTCTGATTCAACCTCCCTGCCCAATGATAAACCTGAT---G-----C--AG---AGA-- 1826
||||||||||||||||||| ||||||| |||||||||| | | || |||
Sbjct 1250 GCTCTGATTCAACCTCCCTACCCAATGTTAAACCTGATTCTGAGAATCCGAGTTCAGAGA 1309
Query 1827 CTGAGAAACAAGACGATGATTCTGCAGAACTGGACAGCTCAAAAG 1871
||||||||||||||||| || ||||| ||| ||||||||||||||
Sbjct 1310 CTGAGAAACAAGACGATAATACTGCACAACCGGACAGCTCAAAAG 1354
> Ahg910175 jgi|Araly1|910175|Al_scaffold_0001_429
Length=1236
Score = 520 bits (281), Expect = 2e-146
Identities = 939/1237 (76%), Gaps = 124/1237 (10%)
Strand=Plus/Plus
Query 537 CCATGTCGGAAACTCAGCAGCAGGTTCAGAACTCTACTGG-GTCGATTCGATCTCCCGAC 595
||||||| || ||| ||||| || |||| ||| | ||| ||||||||||||| |||||
Sbjct 11 CCATGTCAGACACT---CAGCATGTACAGAGCTCCA-TGGTGTCGATTCGATCTTCCGAC 66
Query 596 AAAATTGAAGATACCTTCAGGAGGATGAAAGTTAATGAAG-ACAATATGGAGCAATCTAG 654
||||| |||||| |||| |||| ||||||||| |||| || || |||| |||| |
Sbjct 67 AAAATCGAAGATGCCTTTAGGAAGATGAAAGTAAATG-AGAACGGCGGGGAGGAATCGAA 125
Query 655 TCCATATCCTGATCGTCCTGGTGAGCGAGATTGCCAGTTCT-TTCTGAGAACTGGTCAGT 713
||| ||||| |||||||| ||||| |||||||||| |||| || | |||||||||| |
Sbjct 126 TCCGTATCCAGATCGTCCCGGTGAAAGAGATTGCCAATTCTATT-TAAGAACTGGTCTCT 184
Query 714 GTGGCTATGGAAACTCTTGTCGATACAATCATCCTCTTACTAATCTTCCACAGGGTATTA 773
|||||||||||| | ||| || ||||||||| | | |||| |||||||||||| | ||
Sbjct 185 GTGGCTATGGAAGCAGTTGCCGTTACAATCAT-C-C-TACTCATCTTCCACAGGATGTT- 240
Query 774 T-TTATTAC-AGAGACCAATTGCCTGAGAGAGTTGGACAGCC------T--G-A--CTGT 820
| |||| || || || | | ||||||||| |||||| ||| | | | | |
Sbjct 241 TCTTATCACAAG-GAGGAGCTCCCTGAGAGAATTGGACTGCCAGATTGTGAGTATTTTCT 299
Query 821 G-AGACAGGAGCCTGTAAGTATGGCCCAACATGTAAATATCACCACCCTAAA-GACAGGA 878
| |||||||||| |||||||| ||| |||| ||||||||||| ||||| ||| || ||||
Sbjct 300 GAAGACAGGAGCTTGTAAGTACGGCTCAACTTGTAAATATCATCACCC-AAAGGATAGGA 358
Query 879 ATGGTGCT-GGACCCGTGCTGTTCAATGTTCTCGGTTTGCCTATGCGGCAGGGTGAGAAG 937
| |||| | ||| || ||||||||||| ||||||| |||||||| ||||||||||||
Sbjct 359 ACGGTG-TACAACCTGTAATGTTCAATGTTATCGGTTTACCTATGCGTCAGGGTGAGAAG 417
Query 938 CCATGTCCATATTACATGCAG-ACAGG-ATTGTGTC-GATTCGGAGTTGCCTGCAAATTC 994
|||||||| |||||| ||| | || || | | || | ||||||||||||| ||||||||
Sbjct 418 CCATGTCCCTATTACCTGC-GAACGGGAACT-TG-CAGATTCGGAGTTGCTTGCAAATT- 473
Query 995 CATCATCCTCATCCTCATTCTCAGCCTTCTAATGGCCA--CT-CTGCATATGCAATGTCC 1051
| || | |||||||| | ||| |||||| || || ||||||||| ||||||
Sbjct 474 C--CA--C-CATCCTCA-----A-CCTGATAATGGACATTCTACTGCATATGGAATGTCT 522
Query 1052 AGCTTTCCGTCTGTTGGTTTTCCTTATGCCAGTGGAATGACAATGGTGTCTTTGCCTCCT 1111
|||||||| |||| |||| | ||||| | |||| | |||| || || | ||
Sbjct 523 AGCTTTCCTTCTGCAAGTTTACAATATGCTAATGGATTAACAA---TG---ATG--T-CT 573
Query 1112 GCAACATATGGAGCTATT-CCACGTCCTCAAGTTCCTCAGTCTCAGGCCTATATGCCCTA 1170
||||||||| || || || ||||| |||||||||||| | |||| || || |
Sbjct 574 ---ACATATGGAACT-TTGCCTCGTCCGCAAGTTCCTCAG--T----CCTACGTG-CCAA 622
Query 1171 -CATGGTTGCACCCTCCCAAGGCCTTTTACCTCCTCAAGGCTGGGCCACTTACATGACTG 1229
||||||| ||||||| |||||||||||||||||||||||||||||| |||||||| |||
Sbjct 623 TCATGGTTTCACCCTCTCAAGGCCTTTTACCTCCTCAAGGCTGGGCCCCTTACATGGCTG 682
Query 1230 CATCTAACCCCATTTACAATATGAAAACTCAAC-TCG--ACTCCAGTTCTAGCGCATCGG 1286
|||||||| |||| |||||| |||| | ||||| | |||| ||||||| ||| |
Sbjct 683 CATCTAACTCCATGTACAATGTGAAGATTCAACCTTATTACTCGGGTTCTAGTGCACCCA 742
Query 1287 TGGCTGTGACCGTGACATCACATCATCA-----CAGTTT-TTCTGAA-AGAGCTGAATGT 1339
| || || | ||| ||| | | | | ||| ||||||| | | | ||||||
Sbjct 743 TAGCCATGGCTGTGGCATTAAACCGTGGTTTGTCAGAAAGTTCTGAACA-ACCAGAATGT 801
Query 1340 AGGTTTTTTATGAACACTGGAACTTGTAAATATGGTGATGATTGCAAATACAGTCATCC- 1398
||||||||||||||||||| || |||||||| || || ||||||||||||| ||||||
Sbjct 802 CGGTTTTTTATGAACACTGGGACATGTAAATACGGAGACGATTGCAAATACAATCATCCC 861
Query 1399 GAAAGAAAG-ATTGTTACAATCACCACCAACTCTCT-TGAACCCTATTGTTCTTCCAGCA 1456
| | | ||| ||| | |||| ||||||||| ||| | | |||||| |||||||||||||
Sbjct 862 GGA-GTAAGGATT-TCACAACCACCACCAAGTCT-TATAAACCCTTTTGTTCTTCCAGCG 918
Query 1457 AGACCAGGACAGCCAGCATGTGGTAACTTCAAGGCCT-ACGGATTTTGCAAGTTTGGAGC 1515
||||| ||||| ||||| ||||||||||||| || || | ||||| |||||||| ||| |
Sbjct 919 AGACCTGGACAACCAGCTTGTGGTAACTTCA-GGTCTTATGGATTCTGCAAGTTCGGAAC 977
Query 1516 AAACTGCAAATTTGATCACTCAATGCTGCTAAACCCTTATAACAATACGGGCTTGGCCAT 1575
|||||||||||| || ||| | ||||||| | | || || |||| |||||||
Sbjct 978 AAACTGCAAATTCGACCACCCGATGCTGCCA-----T-AT--CA----GGGCCTGGCCAT 1025
Query 1576 -G-T-CTTCTCTGCCTACTCCTTATCCTTATGCTCCACCTGTTTCAACTAATTTGAGGAT 1632
| | |||||||||||||||||||| ||| | |||||||||||| || ||||||
Sbjct 1026 AGCTTCTTCTCTGCCTACTCCTTATGCTT---C---ACCTGTTTCAACCCATCAGAGGAT 1079
Query 1633 CTCATCGCCACCAAGCCCCTCTGATAT-GAC-TACCCTATCCAATGGTAAACCCG-CTGC 1689
|||| | | |||| || ||||||| | || | | || || ||||||||||| | | |
Sbjct 1080 CTCACCATCGCCAAACCGCTCTGAT-TCGAAGT-CTCTTTCTAATGGTAAACCTGAC-G- 1135
Query 1690 TGCAGAAGCTCAAAGCTTGGAGACTGAGAAACAAGAC 1726
|| ||||| |||||| ||||||||||||| ||||
Sbjct 1136 TGAAGAAGG--AAAGCTCAGAGACTGAGAAACCAGAC 1170
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75113963140
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5