BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G32960.1
Length=1239
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482238 jgi|Araly1|482238|fgenesh2_kg.4__1298__AT2G32960.1 1317 0.0
> Ahg482238 jgi|Araly1|482238|fgenesh2_kg.4__1298__AT2G32960.1
Length=1056
Score = 1317 bits (713), Expect = 0.0
Identities = 899/982 (92%), Gaps = 39/982 (4%)
Strand=Plus/Plus
Query 14 TCTAAAAGTCCAACAGCGACAACATAGGTTTCTCTCTCTACCATGGCGTGTCTATATAAA 73
|||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 1 TCTAAAAGTCCAACAGCGACAACATAAGTTTCTCTCTCTACAATGGCGTGTCTATATAAA 60
Query 74 GCAAGGTCGTCGATTCATAACGACCATCTCCATTACTTCTCCATAACCTTTCAAGAAACA 133
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 61 GCAAGGTCGTCGATTCATAACGACCATCTCCATTACTTCTCCATAACCTATCAAGAAACA 120
Query 134 AAAACAAGATAAGATCTCTTCAGATTCCTACACTCCAACAAATATAAGTTTCATTAGATT 193
||||| |||| | ||| | || || | | | ||| |||||||
Sbjct 121 AAAAC-----AAGA-----TAAGA-T-CT---CT--------TCT--GATTC-TTAGATT 154
Query 194 CTTTCTTAGCT-AGAGAATGAAACTGATTGAGAAGACGATGAGCATGAACCAGTTTAGGA 252
||||||||||| | |||||||||||||||||||||||||||| |||| | | | | ||
Sbjct 155 CTTTCTTAGCTCA-AGAATGAAACTGATTGAGAAGACGATGAACATG-A-C--TAT-GG- 207
Query 253 CTATGGAGGAGGAGAAGCAAGACGGTGGTGAGCTTTTCCATACCATCGAGGTAGCTAAAG 312
| |||||||||||||||||||||||||||| ||||||||||||||||||| |||||||
Sbjct 208 --A-GGAGGAGGAGAAGCAAGACGGTGGTGAGGTTTTCCATACCATCGAGGTTGCTAAAG 264
Query 313 TTGACCGGAACAACGTGTCTCAGCCGCCGCCGGCTGCTACTGCAGCACTGCTAGAAGTTC 372
||||||||||| ||||||||| |||| || ||||| || ||||| ||||||||||||||
Sbjct 265 TTGACCGGAACTACGTGTCTCCGCCGGCGGCGGCTACTGCTGCACCACTGCTAGAAGTTT 324
Query 373 CCGGTGATGAACTTAACCTAATTCCACCGTTGAACTTTTCGATGGTCGATAATGGTATAT 432
|||| || ||||||||||| |||||||||||||||||| |||| || |||||||||||||
Sbjct 325 CCGGCGACGAACTTAACCTGATTCCACCGTTGAACTTTGCGATTGTTGATAATGGTATAT 384
Query 433 TCCGGTCTGGATTCCCGGACTCGGCGAACTTCTCCTTCATCAAGACTCTTGGCCTTCGCT 492
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 385 TCCGGTCTGGATTCCCGGACTTAGCGAACTTCTCCTTCATCAAGACTCTTGGCCTTCGCT 444
Query 493 CAATCATATCTTTGTGTCCAGAGCCATATCCTGAGAACAACATGCAGTTCCTCAAATCCA 552
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 445 CAATCATATCTTTGTGTCCAGAGCCATATCCTGAGAACAACATGCAGTTCCTCAAATCCA 504
Query 553 ATGGAATTAGTCTTTTTCAGTTTGGCATTGAAGGCTCTAAGTCCAAGTGTCTTCCCGGAT 612
||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| |
Sbjct 505 ATGGAATTAGTCTTTTTCAGTTTGGCATTGAAGGCTCCAAGTCCAAGTGTCTCCCCGGGT 564
Query 613 TAGAGAACGAGGTTTGGTTGCATATTTGGAGTTCTAAGCATCAGAAAGAGGATTTTTATA 672
||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 565 TAGAGAACGAGGTTTGGTTGCATATTTGGAGTTCTAAGCATCAGAAAGAGGGTTCCTATA 624
Query 673 CAAATGGAAATTCAAAAACTTCGGAGCCATTTGTAGATATCCTAGATCAGAAAATCCGTG 732
||||||||||||| ||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 625 CAAATGGAAATTCGAAAACTTCGGAGCCATTAGTAGATATCCTAGATCATAAAATCCGTG 684
Query 733 AAGCACTCAAAGTCCTTCTCGATGAGAAGAACCATCCACTTTTGATTCATTGCAAACGAG 792
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 685 AAGCACTCAAAGTCCTTCTCGATGAGAAGAACCATCCACTTTTGATTCATTGCAAACGAG 744
Query 793 GCAAGCACAGAACCGGGTGTCTTGTTGGGTGCATGAGGAAACTCCAGAAATGGTGCATAA 852
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 745 GCAAGCACAGGACCGGGTGTCTTGTTGGGTGCATGAGGAAACTCCAGAAATGGTGCATAA 804
Query 853 CATCGATACTCGATGAGTAT-AAGCGATTTGCAGCGGCTAAAGCTAGAGTTTCGGATCAA 911
|||||||| |||| ||||| || |||||||||||||||||||||||||||||||| |||
Sbjct 805 CATCGATATTCGACGAGTACCAA-CGATTTGCAGCGGCTAAAGCTAGAGTTTCGGACCAA 863
Query 912 AGGTTCTTGGAGTCATTCGATGTATCAGGCTTGAAGCACACTCCAATGTCTTTTTCTTGC 971
|||||| ||||||||||||||||||||||||||||||||| |||||||||||| ||||||
Sbjct 864 AGGTTCATGGAGTCATTCGATGTATCAGGCTTGAAGCACATTCCAATGTCTTTCTCTTGC 923
Query 972 TCCAATAGGTAAAATAAAAACG 993
||||||||||||||| ||||||
Sbjct 924 TCCAATAGGTAAAATGAAAACG 945
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46281221238
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5