BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G32970.2
Length=2575
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482239 jgi|Araly1|482239|fgenesh2_kg.4__1299__AT2G32970.1 3576 0.0
> Ahg482239 jgi|Araly1|482239|fgenesh2_kg.4__1299__AT2G32970.1
Length=2376
Score = 3576 bits (1936), Expect = 0.0
Identities = 2222/2357 (94%), Gaps = 32/2357 (1%)
Strand=Plus/Plus
Query 13 TGAAGATTAAAAACCGACGAGACCCTGGCGCCATCACAACTACGCAATCT-CATTCCTCC 71
|||||||||||||||||||||||||||||||||| ||| | |||||| |||| ||||
Sbjct 1 TGAAGATTAAAAACCGACGAGACCCTGGCGCCAT---AAC-A-ACAATCTCCATT-CTCC 54
Query 72 GTCTTCTTCGGCTTTCAAATTTACCATTTTACCCTTCTCTTTCCCTGAGACGTCTTCTTT 131
|||||| ||||||| |||||||||||||||||||||||||||||||||||| |||| |||
Sbjct 55 GTCTTCCTCGGCTTCCAAATTTACCATTTTACCCTTCTCTTTCCCTGAGACTTCTTTTTT 114
Query 132 GGAAATATTC-T-TC-TCTTCTTCCATTCCAATGATTTTGAGGTTAATTGGAAATTAGAG 188
|||||||||| | || |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 115 GGAAATATTCTTCTCTTCTTCTTCCATTCCAATGATTTTGAGTTTAATTGGAAATTAGAG 174
Query 189 TGCAAAATTGGGATTTAGATGGGGATTGCTGATGAATCTAAATGTGTTTTCCCCTTGACG 248
||||| |||||||||||||||||||||| ||||||||||||||||||||||||||| |||
Sbjct 175 TGCAATATTGGGATTTAGATGGGGATTGGTGATGAATCTAAATGTGTTTTCCCCTTAACG 234
Query 249 AGTCTCCAGATCGGAGACTTGCAATCATATCTTTCTGATCTCAGTATTTTCCTGGGAAAT 308
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 235 AGTCTCCAGATCGGAGACTTGCAATCGTATCTTTCTGATCTCAGTATTTTCCTGGGAAAT 294
Query 309 AAAAGTAAAAAGATTTACATATTGGTGGATAACCGGCCATGGTTGAATCCTGGCACCAGA 368
||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||| |
Sbjct 295 AAAAGTAAAAAGATTTACATATTGGTGGACAACCGGCCATGGTTGAATCCTGGAACCAAA 354
Query 369 TCTGCTCATTTTTGGCAACTAATGGTCACAAAGTCCAGACTCTCCCCTTTTGCAAACACG 428
||||||||||| |||||||||||||| || || |||||||| ||||| |||||||||
Sbjct 355 TCTGCTCATTTCTGGCAACTAATGGTTAC-AA----AGACTCTCTCCTTTCGCAAACACG 409
Query 429 AAACTTCGAGGggagaagaaaaatcagaatcaggacagggagaagaaaaagtcgaagcag 488
||| ||||||||||||||||||||||||| ||||| ||||||||||||||||||||| |
Sbjct 410 AAAGTTCGAGGGGAGAAGAAAAATCAGAAGCAGGAGGGGGAGAAGAAAAAGTCGAAGCCG 469
Query 489 gaggaggaag-agaagCCTAAAGAGGCTTGTTCTCAGCCCCAGCCGGACGATaaaaaaaT 547
|||||| || | |||||||||||||| ||||||||||||||||| ||| ||| ||||||
Sbjct 470 AAGGAGG-AGAAAAAGCCTAAAGAGGCGTGTTCTCAGCCCCAGCCAGACAATATAAAAAT 528
Query 548 GAAGAAGCTTAAGCAGTGGTTCTCATTGATAGATGCGACAACTTTTTCGAATAAGAAATT 607
||| ||||||||| | ||||||||| |||||||||||||||| ||||| || ||||||||
Sbjct 529 GAAAAAGCTTAAGAAATGGTTCTCAGTGATAGATGCGACAACATTTTCTAAGAAGAAATT 588
Query 608 ACCTGCAAAGAAACTGCAGAGCTCTTTGTATCTGAAA-AAGCAACTGCACAAGACCTTGT 666
|||||||||||||||||| |||||||||||||| ||| ||||||||||||||||||||||
Sbjct 589 ACCTGCAAAGAAACTGCAAAGCTCTTTGTATCT-AAACAAGCAACTGCACAAGACCTTGT 647
Query 667 ATGGTTTCATCGTGTTTGAGATTGAATGGGCTAATGTGAGGGGTATCAACTACTTAAATG 726
||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||
Sbjct 648 ATGGTTTCATCGTGTTTGAAATTGAATGGGTTAATGTGAGGGGTATCAACTACTTAAATG 707
Query 727 AGCTACAGACAGACACATCTCTTGCTATAGAAGCTAAGTTGATGCGAAGGTGGGAGTTTG 786
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 708 AGCTACAGACAGACACATCTCTTGCTATAGAAGCTAAGTTGATGCGAAGGTGGGAGTTTG 767
Query 787 AGAGTATCGATCAAGCTGTGAAA-AGCATGTCTCAGTGGTTCTCTGGATCAAAAGCTGAA 845
||||||| ||||||||||| ||| ||||||||||||||||||||||||||| ||||||||
Sbjct 768 AGAGTATTGATCAAGCTGT-AAATAGCATGTCTCAGTGGTTCTCTGGATCAGAAGCTGAA 826
Query 846 AAGTCTTGCTTGAGGGAATATCTCGACTCAACTATAGGAGAGGTTTTTCATGACACTGAA 905
||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 827 AAGTCTTACTTGAGGGAATATCTCGACTCAACTATAGGAGAGGTTTTTCATGACGCTGAA 886
Query 906 ATGGAATTCTCAAAAACTACTCTCTCTGATGACGATGACAATCTTTCTGTTGAAAATGAT 965
|||||||||||||||||| ||| || |||||| |||||||||| |||||||||||||||
Sbjct 887 ATGGAATTCTCAAAAACTCCTCCCTTTGATGATGATGACAATCGTTCTGTTGAAAATGAC 946
Query 966 TCTCCTTGCTGCTCCAGAAGTGTCTTCAACGTTAATCATTCTGCTGCAAATTATGATGAA 1025
|||||||||||| |||||||||||||||||||||||||| |||||| | |||||||||||
Sbjct 947 TCTCCTTGCTGCGCCAGAAGTGTCTTCAACGTTAATCATGCTGCTGTAGATTATGATGAA 1006
Query 1026 AACGAGCCTCACACACCGCCTCTGACTGGACCGTACAAGAGAAGAAGAGTAACTAAGGCA 1085
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1007 AACGAGCCTCACACACCGCCTCTGACTGGACCATACAAGAGAAGAAGAGTAACTAAGGCA 1066
Query 1086 ATCAGCACCGGAGTTGAAGTTGACTATATGGAGGAAACACCCAGAAGAAAAGATAACTCG 1145
|||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1067 ATCAGCACTGGAGTTGAAGTTGACTATATGGAGGAAACACCCAAAAGAAAAGATAACTCG 1126
Query 1146 GTAGACCACTGGGAAAGCCATGTACCTGATTGTGACAACATCATTGAAGCAACCCAGTAT 1205
||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||
Sbjct 1127 GTAGACCACTGGGAAAGCCATGTACCTGATTGTGAGAACATCACTGAAGCAACCCAGTAT 1186
Query 1206 AAGGATGTACTAGTTCTTGTTAGGTGTGGTGACCGTGATCTCCCTTTCAAGTTGCGAGAG 1265
|||||||||||||||||||||| |||||||||||||||||| ||||| || |||||||||
Sbjct 1187 AAGGATGTACTAGTTCTTGTTAAGTGTGGTGACCGTGATCTTCCTTTTAAATTGCGAGAG 1246
Query 1266 GTTATAATGGCTGACATACGATTGCTTACTTTACTTGAAGCTGGTCTCCCTTCATGGGTC 1325
|||||||||||||||||||| ||||||||||||||||||||||||||||| || ||||||
Sbjct 1247 GTTATAATGGCTGACATACGCTTGCTTACTTTACTTGAAGCTGGTCTCCCGTCCTGGGTC 1306
Query 1326 TTGTTTCTGCAGTCTTATCCCGGTTTCTGTCATCTTTATCGACCCTGGATGTGCCATTTC 1385
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1307 TTGTTTCTGCAGTCTTATCCCGGTTTCTGTCATCTTTATCGACCCTGGATGTGCCTTTTC 1366
Query 1386 GCCAGAGCATTATATGTGATGATATCTGTCATCACTGTTGTGATTGGTTTTTATGACCTG 1445
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1367 GCCAGAGCATTATATGTGATGGTATCTGTCATCACTGTTGTGATTGGTTTTTATGACCTG 1426
Query 1446 TACAAAAATGTCCCTGTTCTGAAGGCTACTGCATCTCGGTTATGTGGGCCACTGTTCGAT 1505
|||||||||||||| |||||||||||||||||| ||||||||||||||||||| || |||
Sbjct 1427 TACAAAAATGTCCCCGTTCTGAAGGCTACTGCAGCTCGGTTATGTGGGCCACTCTTTGAT 1486
Query 1506 TGGGTTGAAACATGGGACATGGTATCCCGAATAAAGTACTTGGGAACGATGTTGTTTCTT 1565
|||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 1487 TGGGTTGAAACATGGGACATGGTATCACGGATAAAGTACTTGGGAACGATGTTGTTTCTT 1546
Query 1566 CACAACTTCCAGAAAGCTGTCAAGTGGGCTCTGACTATGGCACGTGCTATGCAGTCATTT 1625
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1547 CACAACTTCCAGAAAGCTGTCAAATGGGCTCTGACTATGGCACGTGCTATGCAGTCATTT 1606
Query 1626 GTTTCTTTTTGCATAATGCCTCTGGTAAATCCTCTCTTAGACA-TTCTTGAATTGCTCCT 1684
||||||||||||||||||||||||||||||||||||||||| | |||||| ||||||||
Sbjct 1607 GTTTCTTTTTGCATAATGCCTCTGGTAAATCCTCTCTTAGA-AGTTCTTGGTTTGCTCCT 1665
Query 1685 ACCGTTATGGAATTCGTTGGCGGAAACAGTGGCAAGCTTGGTTTCAGTGGTTTGGATAGT 1744
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1666 ACCGTTATGGAATTCGTTGGCGGAAACAGTGGCGAGCTTGGTTTCAGTGGTTTGGATAGT 1725
Query 1745 GATGGAGTCTGGTTGCAATCTTGTTGGTGATGTGGTAGAGTTGGTGCTTTTGCCCATCTC 1804
||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1726 GATTGAGTCTGGTTGCAATCTCGTTGGTGATGTGGTAGAGTTGGTGCTTTTGCCCATCTC 1785
Query 1805 GCTAGTTTGGAACGTCACAAATACTGTTTTACTACCTCTATTCTGGATCATATGGGAAGT 1864
|||||||||||| ||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 1786 ACTAGTTTGGAACCTCACAAATACTGTTTTACTGCCTCTTTTCTGGATCATATGGGAAGT 1845
Query 1865 GGTATATGCACCGATCAGAGTGGTTGCTGCATTGGCCAATTGTTTAGCTGTTTCCTTCTC 1924
||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1846 GGTATATGCGCCGATCAGAGTGGTTGCTGCATTGGCCAACTGTTTAGCTGTTTCCTTCTC 1905
Query 1925 ATACATATTCGATGTTATTGGAGATTTATGGAGGTATATGAGCAGTATACTTCAGCTTGC 1984
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1906 ATACATATTCGATCTTATTGGAGATTTATGGAGGTATATGAGCAGTATACTTCAGCTTGC 1965
Query 1985 ATCAGATTCTCAAGCAGCTGTGAAGACTTATGAAGTCTCCATGTGGCGTACACTTTGGAA 2044
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1966 ATCAGATTCTCAAGCAGCTGTGAAGACTTATGAAGTCTCCATGTGGCGTACTCTTTGGAA 2025
Query 2045 CGATCTCTTTTCTCATGTTTTTCGTGCTGTCAGGAGCATATTGAACGGTTTTGTAGCATT 2104
||| |||||||||||||||||||||||||||||||| ||||||||||||||||| || ||
Sbjct 2026 CGACCTCTTTTCTCATGTTTTTCGTGCTGTCAGGAGTATATTGAACGGTTTTGTGGCCTT 2085
Query 2105 TTTTGCTGCCTGTAACAGACATCGGCTTAGTACATATAATCACATACAAGAGTTTATGGA 2164
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 2086 CTTTGCTGCCTGTAACAGACATCGGCTTAGTACATATAATCACATACAAGAGTTTATCCA 2145
Query 2165 GAGAGTACATGGACGAACCACGAGACCAGAATCTATAGACTCAAGACATGGCAAGTCTGT 2224
||||||||||||||||||||||||| |||||||||||||||||||| |||||| |||||
Sbjct 2146 GAGAGTACATGGACGAACCACGAGATCAGAATCTATAGACTCAAGAGATGGCATGTCTGC 2205
Query 2225 TAAGAACAATCAACGTACAGGAGACGAAACGAGAAGGAAATTGCACCTTGCATAGAAGTC 2284
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2206 TAAAAACAATCAACGTACAGGAGACGAAACGAGAAGGAAATTGCACCTTGCATAGAAGTC 2265
Query 2285 AA-A--A----CTTAAATTCTTTTGATTACTTTTTCTTGCCAGAGAATATGATAGGTTAG 2337
|| | | ||||| ||||||||||| |||| ||| |||||| ||||||||||||||
Sbjct 2266 AACACGAAAATCTTAA-TTCTTTTGATTTGTTTT-CTTACCAGAGTATATGATAGGTTAG 2323
Query 2338 TGTATAGATAGATAGGT 2354
||||||||||||||||
Sbjct 2324 GGTATAGATAGATAGGT 2340
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 97092034505
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5