BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G32990.1
Length=1862
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482241 jgi|Araly1|482241|fgenesh2_kg.4__1301__AT2G32990.1 2771 0.0
Ahg887794 jgi|Araly1|887794|Al_scaffold_0120_2 2516 0.0
> Ahg482241 jgi|Araly1|482241|fgenesh2_kg.4__1301__AT2G32990.1
Length=1837
Score = 2771 bits (1500), Expect = 0.0
Identities = 1738/1851 (94%), Gaps = 23/1851 (1%)
Strand=Plus/Plus
Query 7 AGAGACTAGTGAGTGAGAGAGTCCATCGCTTTCTTTCTTtctctctctcgctctctctTC 66
|||||||||||||||||||||||||||| ||||| | | ||||| |||||| |||
Sbjct 1 AGAGACTAGTGAGTGAGAGAGTCCATCG----CTTTC--T-T-TCTCT--CTCTCTATTC 50
Query 67 ATCTCCAACAGAGACTTCTTTCTAGAGAAAGAGATCTTCACAAATATGACTGTGATGAAT 126
|||||||||||||||||||||||| ||||||||||||||| ||| |||||||||||| ||
Sbjct 51 ATCTCCAACAGAGACTTCTTTCTAAAGAAAGAGATCTTCA-AAAAATGACTGTGATGGAT 109
Query 127 CACCGACACAAGCAATGTCA-TTT-T-CTCCT-C--CTCCTTCTGATCACTGTCTTCTCT 180
||||||||||||| ||| || ||| | ||||| | |||||||||||||||||||||||
Sbjct 110 CACCGACACAAGCCATGCCATTTTCTCCTCCTCCTTCTCCTTCTGATCACTGTCTTCTCC 169
Query 181 GCCGCGTTGGATGGTGTTTCTTCCGAGACAGACGTCGGAGGGTTTGACTACGGTGAAGCA 240
|||| ||||| | |||||| || ||||||||||||||| ||||||||||||||||||||
Sbjct 170 GCCGTGTTGGCCGATGTTTCGTCGGAGACAGACGTCGGAAGGTTTGACTACGGTGAAGCA 229
Query 241 TTGTCTAAAAGCTTACTCTACTTTGAAGCTCAGAGATCAGGAAGACTTCCGTACAACCAG 300
||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 230 TTGTCTAAAAGCTTACTCTACTTTGAAGCTCAGAGATCAGGGAGACTTCCGTATAACCAG 289
Query 301 CGCGTGACTTGGCGTGATCACTCTGGTCTCACCGATGGTCTTGAACAAGGGGTTGATTTA 360
|||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 290 CGCGTGACGTGGCGTGATCACTCTGGTCTCACCGATGGTCTTGAACAAGGGGTGGATTTA 349
Query 361 GTGGGAGGATATCACGACGCCGGAGACCATGTTAAATTTGGACTTCCGATGGCTTTTACG 420
||||||||||||||||||||||| || ||||||||||||||||| || |||||||| |||
Sbjct 350 GTGGGAGGATATCACGACGCCGGTGATCATGTTAAATTTGGACTGCCCATGGCTTTCACG 409
Query 421 GTGACAATGTTGTCATGGAGTGTAATAGAGTACGGTGACTCACTCGCTTCCACCGGAGAG 480
||||| ||||| ||||||||||||||||||||||||||| |||||||||||||||| |||
Sbjct 410 GTGACGATGTTATCATGGAGTGTAATAGAGTACGGTGACACACTCGCTTCCACCGGCGAG 469
Query 481 TTATCTCACGCGCTTGAAGCCATCAAGTGGGGAACAGACTACTTCATCAAGGCACACACA 540
||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 470 TTATCTCACGCGCTTGAAGCCATTAAGTGGGGAACAGACTACTTCATCAAGGCACATACA 529
Query 541 AGCCCAAATGTCTTATGGGCCGAAGTTGGCGACGGTGACACTGACCACTACTGTTGGCAA 600
||||||||||| |||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 530 AGCCCAAATGTTTTATGGGCTGAAGTAGGCGACGGTGACACTGACCACTACTGTTGGCAA 589
Query 601 AGACCGGAGGACATGACGACTTCACGGAGAGCTTTCAAGATCGATGAGAATAATCCGGGA 660
||||||||||||||||||||||||||| |||||||||||||||| || || ||||| ||
Sbjct 590 AGACCGGAGGACATGACGACTTCACGGCGAGCTTTCAAGATCGACGAAAACAATCCTGGT 649
Query 661 TCAGATATCGCTGGAGAAACTGCGGCGGCTATGGCGGCAGCTTCGATCGTTTTCCGTTCA 720
||||||||||| || ||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 650 TCAGATATCGCCGGGGAAACCGCCGCGGCTATGGCGGCAGCTTCGATCGTTTTCCGTTCA 709
Query 721 ACAAATCCACATTACTCTCACCTTCTCTTGCACCATGCCCAACAATTGTTTGAGTTTGGA 780
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 710 ACAAATCCACATTACTCTCACCTTCTCTTGCACCATGCCCAACAATTGTTTGGGTTTGGA 769
Query 781 GACAAGTACAGAGGAAAATACGATGAGAGTCTAAAAGTTGTGAAAAGTTATTATGCCTCG 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 770 GACAAGTACAGAGGAAAATACGATGAGAGTCTAAAAGTTGTGAAAAGTTATTATGCCTCG 829
Query 841 GTGAGTGGGTACATGGACGAGCTTTTATGGGGTGCCACTTGGCTTTATCGAGCCACCGAC 900
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 830 GTGAGTGGGTACATGGACGAGCTTTTATGGGGTGCCACGTGGCTTTATCGAGCCACCGAC 889
Query 901 AATGAGCACTATATGAGTTATGTGGTTGACATGGCTCACCAACTAGGTGGCCTTTCTTGG 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 890 AATGAGCACTATATGAGTTATGTGGTTGACATGGCTCACCAACTAGGTGGCCTTTCTTGG 949
Query 961 GCCATGTCCGAGTTTAGCTGGGACGTCAAGTTCGCCGGTGTTCAACTCCTAGCTTCCATG 1020
||||||||||||||||||||||||||||||| |||||| ||||| ||||| |||||||||
Sbjct 950 GCCATGTCCGAGTTTAGCTGGGACGTCAAGTACGCCGGCGTTCAGCTCCTCGCTTCCATG 1009
Query 1021 TTGCTAAAAGAAGAAAAGCACAAGCAACATTCTAAAGTCCTACAACAATACAAATCAAAG 1080
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1010 TTGCTAAAAGAAGAAAAGCACAAGCAACATTCTAAAGTCCTACAACAATACAAATCAAAG 1069
Query 1081 GCGGATCATTACCTATGCTCAATTCTCAACAAGAACATCAACGGCACAAACGTCCAGCGA 1140
||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 1070 GCGGATCATTACCTATGCTCAATTCTCAACAAGAATATCAACGGCACAAACGTTCAGCGA 1129
Query 1141 ACTCCTGCCGGTTTACTCTACGTCCGACAATGGAACAATATGCAATACGTATCCACAGCA 1200
||||| || ||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 1130 ACTCCGGCTGGTTTACTCTACGTCCGGCAATGGAACAATATGCAATACGTATCCACCGCA 1189
Query 1201 TCTTTCCTCCTAACCGTATATTCTGATCATCTCCGAAAATCAAACACCGATCTCGAGTGT 1260
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1190 TCTTTCCTCCTAACCGTATATTCGGATCATCTCCGAAAATCAAACACCGATCTCGAGTGT 1249
Query 1261 CACGAAGGAACCGTAACTCCTGACGAGATGCTTGGCTTTGCGAAATCTCAAATCGATTAC 1320
||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 1250 CACGAAGGAACCGTAACTCCTGATGAGATGCTTGGCTTTGCGAAATCCCAAATCGATTAC 1309
Query 1321 ATTTTAGGATCAAATCCAATGGAAACAAGTTATCTAGTCGGGTACGGTCCAAAATACCCG 1380
||||||||||| ||||| ||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 1310 ATTTTAGGATCGAATCCGATGGAAACAAGCTATCTTGTCGGGTACGGTCCAAAATACCCG 1369
Query 1381 ATTAGGGTTCATCATCGAGGCGCGTCTATCGCTTCTTTTAAAGAGCACAAAGGTTTTATA 1440
| |||||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 1370 ACTAGGGTTCATCATCGAGGCGCGTCTATCGCTTCTTTTAAAGAACACAAAGGGTTTATT 1429
Query 1441 GGATGTACTCAAGGATATGATAATTGGTATGGACGGTCCGAGCCAAATCCGAGTGTTTTA 1500
||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 1430 GGATGTACTCAAGGATATGATAATTGGTACGGACGGTCTGAGCCAAATCCGAGTGTTTTA 1489
Query 1501 GTCGGGGCTTTGGTTGGAGGACCGGATCACCAGGATGATTTTGATGACCGGAGGGGTAAT 1560
|| ||||||||||| ||||| |||||| |||||||||| |||||||||||||||| ||||
Sbjct 1490 GTTGGGGCTTTGGTCGGAGGGCCGGATGACCAGGATGAATTTGATGACCGGAGGGATAAT 1549
Query 1561 TACGTTCAAACGGAGGCTTGTACGTACAATACTGCTCCTTTGGTCGGTGTGTTTGCGAGA 1620
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1550 TACGTTCAAACAGAGGCTTGTACGTACAATACTGCTCCTTTGGTCGGTGTGTTTGCGAGA 1609
Query 1621 CTTATAGAGCTTGAGGAGCAAAAACTTGAAGAAGAAGATGTGAGCTTGGTTGCAACTTAT 1680
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1610 CTTATAGAGCTTGAGGAGCAAAAACTTGAAGAAGAAGATGTGAGCTTGGTTGCAACTTAT 1669
Query 1681 AAGAGATAGTTTTTATTTAATCAA-TACaaaaaaaaGAA-AGAAAATGTGGTTTTATTTT 1738
||||||||||||||||| || || | ||| | ||| || ||||||||||||||||||||
Sbjct 1670 AAGAGATAGTTTTTATTAAAAAAAAT-CAATACAAA-AATAGAAAATGTGGTTTTATTTT 1727
Query 1739 GCACCCATTTTGCCATTTCTATATTGTTAGAGTTTTTCTTCTCAACtttttttttt-tgt 1797
|||||||||||||||||||||||||||||||||||||||||||||| ||||| | |||
Sbjct 1728 GCACCCATTTTGCCATTTCTATATTGTTAGAGTTTTTCTTCTCAACAATTTTTCGTGTGT 1787
Query 1798 tttgtttttAAATAAAAAGTGTGTATAAAATATCAATTATCAATATAGATT 1848
|| | ||| |||||||||||||||||||| |||||||||||||||||
Sbjct 1788 TTAAATAAAAAA-AAAAAGTGTGTATAAAATATTAATTATCAATATAGATT 1837
> Ahg887794 jgi|Araly1|887794|Al_scaffold_0120_2
Length=1584
Score = 2516 bits (1362), Expect = 0.0
Identities = 1511/1584 (95%), Gaps = 6/1584 (0%)
Strand=Plus/Plus
Query 112 ATGACTGTGATGAATCACCGACACAAGCAATGTCA-TTT-T-CTCCT-C--CTCCTTCTG 165
|||||||||||| ||||||||||||||| ||| || ||| | ||||| | |||||||||
Sbjct 1 ATGACTGTGATGGATCACCGACACAAGCCATGCCATTTTCTCCTCCTCCTTCTCCTTCTG 60
Query 166 ATCACTGTCTTCTCTGCCGCGTTGGATGGTGTTTCTTCCGAGACAGACGTCGGAGGGTTT 225
|||||||||||||| |||| ||||| |||||||| || ||||||||||||||| |||||
Sbjct 61 ATCACTGTCTTCTCCGCCGTGTTGGCCGGTGTTTCGTCGGAGACAGACGTCGGAAGGTTT 120
Query 226 GACTACGGTGAAGCATTGTCTAAAAGCTTACTCTACTTTGAAGCTCAGAGATCAGGAAGA 285
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 121 GACTACGGTGAAGCATTGTCTAAAAGCTTACTCTACTTTGAAGCTCAGAGATCAGGGAGA 180
Query 286 CTTCCGTACAACCAGCGCGTGACTTGGCGTGATCACTCTGGTCTCACCGATGGTCTTGAA 345
|||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 181 CTTCCGTATAACCAGCGCGTGACGTGGCGTGATCACTCTGGTCTCACCGATGGTCTTGAA 240
Query 346 CAAGGGGTTGATTTAGTGGGAGGATATCACGACGCCGGAGACCATGTTAAATTTGGACTT 405
|||||||| ||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 241 CAAGGGGTGGATTTAGTGGGAGGATATCACGACGCCGGTGATCATGTTAAATTTGGACTG 300
Query 406 CCGATGGCTTTTACGGTGACAATGTTGTCATGGAGTGTAATAGAGTACGGTGACTCACTC 465
|| |||||||| |||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 301 CCCATGGCTTTCACGGTGACGATGTTATCATGGAGTGTAATAGAGTACGGTGACTCACTC 360
Query 466 GCTTCCACCGGAGAGTTATCTCACGCGCTTGAAGCCATCAAGTGGGGAACAGACTACTTC 525
||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 361 GCTTCCACCGGCGAGTTATCTCACGCGCTTGAAGCCATCAAGTGGGGAACAGATTACTTC 420
Query 526 ATCAAGGCACACACAAGCCCAAATGTCTTATGGGCCGAAGTTGGCGACGGTGACACTGAC 585
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 421 ATCAAGGCACACACAAGCCCAAATGTCTTATGGGCCGAAGTAGGCGACGGTGACACTGAC 480
Query 586 CACTACTGTTGGCAAAGACCGGAGGACATGACGACTTCACGGAGAGCTTTCAAGATCGAT 645
|||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||
Sbjct 481 CACTACTGTTGGCAAAGACCGGAGGACATGACGACTTCACGGCGAGCTTTTAAGATCGAC 540
Query 646 GAGAATAATCCGGGATCAGATATCGCTGGAGAAACTGCGGCGGCTATGGCGGCAGCTTCG 705
||||| |||||||||||||||||||| || ||||| | |||||||||||||||||||||
Sbjct 541 GAGAACAATCCGGGATCAGATATCGCCGGGGAAACCACCGCGGCTATGGCGGCAGCTTCG 600
Query 706 ATCGTTTTCCGTTCAACAAATCCACATTACTCTCACCTTCTCTTGCACCATGCCCAACAA 765
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 ATCGTTTTCCGTTCAACAAATCCACATTACTCTCACCTTCTCTTGCACCATGCCCAACAA 660
Query 766 TTGTTTGAGTTTGGAGACAAGTACAGAGGAAAATACGATGAGAGTCTAAAAGTTGTGAAA 825
||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 661 TTGTTTGGGTTTGGAGACAAGTACAGAGGAAAATACGATGAGAGTCTCAAAGTTGTGAAA 720
Query 826 AGTTATTATGCCTCGGTGAGTGGGTACATGGACGAGCTTTTATGGGGTGCCACTTGGCTT 885
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 721 AGTTATTATGCCTCGGTGAGTGGGTACATGGACGAGCTTTTATGGGGTGCCACGTGGCTT 780
Query 886 TATCGAGCCACCGACAATGAGCACTATATGAGTTATGTGGTTGACATGGCTCACCAACTA 945
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 TATCGAGCCACCGACAATGAGCACTATATGAGTTATGTGGTTGACATGGCTCACCAACTA 840
Query 946 GGTGGCCTTTCTTGGGCCATGTCCGAGTTTAGCTGGGACGTCAAGTTCGCCGGTGTTCAA 1005
|||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||
Sbjct 841 GGTGGCCTTTCTTGGGCCATGTCCGAGTTTAGCTGGGACGTCAAGTACGCCGGCGTTCAG 900
Query 1006 CTCCTAGCTTCCATGTTGCTAAAAGAAGAAAAGCACAAGCAACATTCTAAAGTCCTACAA 1065
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 CTCCTCGCTTCCATGTTGCTAAAAGAAGAAAAGCACAAGCAACATTCTAAAGTCCTACAA 960
Query 1066 CAATACAAATCAAAGGCGGATCATTACCTATGCTCAATTCTCAACAAGAACATCAACGGC 1125
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 961 CAATACAAATCAAAGGCGGATCATTACCTATGCTCAATTCTCAACAAGAATATCAACGGC 1020
Query 1126 ACAAACGTCCAGCGAACTCCTGCCGGTTTACTCTACGTCCGACAATGGAACAATATGCAA 1185
|||||||| ||||||||||| || ||||||||||||||||| ||||||||||||||||||
Sbjct 1021 ACAAACGTTCAGCGAACTCCGGCTGGTTTACTCTACGTCCGGCAATGGAACAATATGCAA 1080
Query 1186 TACGTATCCACAGCATCTTTCCTCCTAACCGTATATTCTGATCATCTCCGAAAATCAAAC 1245
||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1081 TACGTATCCACCGCATCTTTCCTCCTAACCGTATATTCGGATCATCTCCGAAAATCAAAC 1140
Query 1246 ACCGATCTCGAGTGTCACGAAGGAACCGTAACTCCTGACGAGATGCTTGGCTTTGCGAAA 1305
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1141 ACCGATCTCGAGTGTCACGAAGGAACCGTAACTCCTGATGAGATGCTTGGCTTTGCGAAA 1200
Query 1306 TCTCAAATCGATTACATTTTAGGATCAAATCCAATGGAAACAAGTTATCTAGTCGGGTAC 1365
|| ||||||||||||||||||||||| ||||| ||||||||||| ||||| |||||||||
Sbjct 1201 TCCCAAATCGATTACATTTTAGGATCGAATCCGATGGAAACAAGCTATCTTGTCGGGTAC 1260
Query 1366 GGTCCAAAATACCCGATTAGGGTTCATCATCGAGGCGCGTCTATCGCTTCTTTTAAAGAG 1425
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1261 GGTCCAAAATACCCGACTAGGGTTCATCATCGAGGCGCGTCTATCGCTTCTTTTAAAGAA 1320
Query 1426 CACAAAGGTTTTATAGGATGTACTCAAGGATATGATAATTGGTATGGACGGTCCGAGCCA 1485
|||||||| ||||| ||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 1321 CACAAAGGGTTTATTGGATGTACTCAAGGATATGATAATTGGTACGGACGGTCTGAGCCA 1380
Query 1486 AATCCGAGTGTTTTAGTCGGGGCTTTGGTTGGAGGACCGGATCACCAGGATGATTTTGAT 1545
||||||||||||||||||||||||||||| ||||| |||||| | || ||||| ||||||
Sbjct 1381 AATCCGAGTGTTTTAGTCGGGGCTTTGGTCGGAGGGCCGGATGAACATGATGAATTTGAT 1440
Query 1546 GACCGGAGGGGTAATTACGTTCAAACGGAGGCTTGTACGTACAATACTGCTCCTTTGGTC 1605
|||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1441 GACCGGAGGGATAATTACGTTCAAACAGAGGCTTGTACGTACAATACTGCTCCTTTGGTC 1500
Query 1606 GGTGTGTTTGCGAGACTTATAGAGCTTGAGGAGCAAAAACTTGAAGAAGAAGATGTGAGC 1665
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1501 GGTGTGTTTGCGAGACTTATAGAGCTTGAGGAGCAAAAACTTGAAGAAGAAGATGTGAGC 1560
Query 1666 TTGGTTGCAACTTATAAGAGATAG 1689
||||||||||||||||||||||||
Sbjct 1561 TTGGTTGCAACTTATAAGAGATAG 1584
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69933689820
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5