BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G33000.1
Length=1800
Score E
Sequences producing significant alignments: (Bits) Value
Ahg887793 jgi|Araly1|887793|Al_scaffold_0120_1 944 0.0
> Ahg887793 jgi|Araly1|887793|Al_scaffold_0120_1
Length=978
Score = 944 bits (511), Expect = 0.0
Identities = 679/762 (89%), Gaps = 4/762 (1%)
Strand=Plus/Plus
Query 828 CTTGCCGGTGGTTTCGGCGAGCCAGGAATCTGCTGAGGCGCCGCCGAATTCGCCAGAGCA 887
|||||||| |||||||| |||| |||||||||||||||||||||| |||| ||||| |||
Sbjct 219 CTTGCCGGAGGTTTCGGTGAGCGAGGAATCTGCTGAGGCGCCGCCTAATTTGCCAGTGCA 278
Query 888 ACCGTCTCTACTGAAAAATGAATGGATCTCTTCATTCTGCGAGGCGGCTAGTACAGCGAC 947
|||||||| | | || ||||| | |||||||||||| | | | || | || ||||||
Sbjct 279 ACCGTCTCAATTCAATTATGAACGCATCTCTTCATTCAGTAATGTGGTTGGTGGAGCGAC 338
Query 948 TAGAGAGGAGGCAATCTATTGCCTTAAAGTCTGCAACTGGGATGTACATCGAGCCATCGG 1007
|||||||||||||||| ||||||||||| ||||||| ||||||||| | |||||| ||||
Sbjct 339 TAGAGAGGAGGCAATCGATTGCCTTAAACTCTGCAATTGGGATGTAGACCGAGCCGTCGG 398
Query 1008 CTTTTATATGGA-GGACTTCTCAGAGCATCAAACGTCAGTGGCAGTCA-ATATGAGTTTG 1065
|||||||||||| || |||||||||||| ||| ||||| | | | | ||||||||||
Sbjct 399 CTTTTATATGGATGG-GTTCTCAGAGCATGAAATGTCAGCAGAAAT-AGCTATGAGTTTG 456
Query 1066 AAGGAGAACAGAAAGCTGCCTCTTTCATCCATCGAATTACCTTCTCAATCGCAGTTTGAG 1125
|||||||||||| ||||||||||| ||||||||||||||||||| |||||||||||| ||
Sbjct 457 AAGGAGAACAGAGAGCTGCCTCTTCCATCCATCGAATTACCTTCACAATCGCAGTTTCAG 516
Query 1126 GCTTCACTTGGTTACTTGAAAGAAGGAAGCACTTCTAGTTTGTTGGAGGTTGATCCGACC 1185
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 517 GCTTCACTTGGTTACTTGAAAGAAGGAAGCACTTCTAGTTTGATGGAGGTTGATCCGACC 576
Query 1186 GAGTTAAAAAGGTCACTCGAAGAGGCTGGTGAAGAAAACGCCGCAGTAGCTATTCCTAGA 1245
||| | ||||||||||||||||||||||| |||||||||||||||||||||||| | ||
Sbjct 577 AAGTCAGAAAGGTCACTCGAAGAGGCTGGTAAAGAAAACGCCGCAGTAGCTATTCTTGGA 636
Query 1246 ATGACATCGTCTCAAGTAGATGGTAAGGGTATTGAGGAAGACTCAAGCATGGAGACATTC 1305
| | | ||||||||||| |||||| ||||| | ||| |||||||||||||||||||||||
Sbjct 637 AAGGCGTCGTCTCAAGTGGATGGTGAGGGTGTGGAGAAAGACTCAAGCATGGAGACATTC 696
Query 1306 CCTGATCCTGTTGCCTACCAAGACAGGATAATTGTGGGGCCTCGAGCTGGGGGGACTACT 1365
|||||||||||||| |||||||||| ||| |||||||||||| ||||| ||||| ||||
Sbjct 697 CCTGATCCTGTTGCTTACCAAGACATGATTGTTGTGGGGCCTCAAGCTGCGGGGAGTACT 756
Query 1366 ATTACATTGACTATCCTCTTGGCCAATACGCGATCGGTAAATATTCCTTTTAGATCAAAC 1425
|||||| | |||||| ||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 757 ATTACAATAACTATCATCTTGGCCAATGGGCGATTGGTAAATATTCCTTTTAGATCAAAC 816
Query 1426 CAAACTGTCAGAGACATCCGTGATGCCATTGACGAGCTAACACCAGATTACGAGAAAGAC 1485
||||| |||||||||||||| ||||| |||||||||||||||||||||||||| ||||||
Sbjct 817 CAAACCGTCAGAGACATCCGAGATGCTATTGACGAGCTAACACCAGATTACGACAAAGAC 876
Query 1486 TACATTTTGCAATCAATGGCTGAAGTAGTTTACATGGATCCAGACATTACTGTACACGAA 1545
||||||||||||||| ||||||||||| |||||||||||| || |||||||||||||||
Sbjct 877 TACATTTTGCAATCAGGGGCTGAAGTAGATTACATGGATCCGGATATTACTGTACACGAA 936
Query 1546 ATATCTACTGGTTCTACAACTCTCCTCCAGATCTACCTGTAG 1587
|||||||||||| ||||||||||||||||||||||||||||
Sbjct 937 ATATCTACTGGTGATACAACTCTCCTCCAGATCTACCTGTAG 978
Score = 244 bits (132), Expect = 1e-63
Identities = 173/192 (90%), Gaps = 5/192 (3%)
Strand=Plus/Plus
Query 475 TTGGTCGAGCGCCGTGCAACGCC-TCTTCAAAAGAAGTCGAATCCTCTACGATTAGATTC 533
||||||||||||||| || |||| || ||||||||||||||||||||||||||||| |||
Sbjct 1 TTGGTCGAGCGCCGTCCACCGCCTTC-TCAAAAGAAGTCGAATCCTCTACGATTAGTTTC 59
Query 534 AAAATCGCGGTTTCTAGATTACTCGAAACCACTCAGAATCGGGAGATCTTCTTCTGACTC 593
|||| ||| ||||| |||||||||||||||||||| ||||||||| ||||||| ||| ||
Sbjct 60 AAAACCGCAGTTTCAAGATTACTCGAAACCACTCAAAATCGGGAGCTCTTCTTTTGATTC 119
Query 594 GATGGAAGTTGACTCGACAGGAGAACAGATCCCTGAAGCTATACCACCTCTAATGGCGTC 653
|||||| |||||||||| ||||||||| |||||||||||| |||| ||||||||||||
Sbjct 120 GATGGAGGTTGACTCGAGAGGAGAACATATCCCTGAAGCTGTACC---TCTAATGGCGTC 176
Query 654 ATCTCAAGTCAA 665
||||||||||||
Sbjct 177 ATCTCAAGTCAA 188
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67572094630
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5