BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G33010.1
Length=2004
Score E
Sequences producing significant alignments: (Bits) Value
Ahg933883 jgi|Araly1|933883|scaffold_401871.1 510 1e-143
Ahg924514 jgi|Araly1|924514|scaffold_200075.1 228 1e-58
> Ahg933883 jgi|Araly1|933883|scaffold_401871.1
Length=1831
Score = 510 bits (276), Expect = 1e-143
Identities = 502/604 (83%), Gaps = 43/604 (7%)
Strand=Plus/Plus
Query 1009 ATTCAGGGAAGTAGCAGTTCTGCTCAAAACTTGGAAGACCACCCACCGCCAAACAATATT 1068
|||||||||||||||| ||||||| ||||| |||||||||||| |||||| | ||| ||
Sbjct 789 ATTCAGGGAAGTAGCACTTCTGCTGAAAACAAGGAAGACCACCCTCCGCCATATAATCTT 848
Query 1069 GATAGAATCTGCACTGAAACTGGTGTGTCTCGAGGTGAAGCAGTCTATTACCTTGAATCC 1128
||||||||||||| ||||||||| |||| |||| ||||||| |||||||||| ||||||
Sbjct 849 GATAGAATCTGCAGTGAAACTGGAGTGTGTCGAAATGAAGCACTCTATTACCTCGAATCC 908
Query 1129 TTCGATGGTGATTTGGCTTCAGCGATAGAGGCTTGCCGCAGCAAAAACTTGCCTACCCTC 1188
|||||| |||||||||| | ||||| |||||||||||||| |||| ||||||| |||||
Sbjct 909 TTCGATTCTGATTTGGCTACGGCGATTGAGGCTTGCCGCAGTAAAACCTTGCCTCCCCTC 968
Query 1189 AAGGTTAGATCTTCGCCAGTGGTTTCGGTGAATGAGATATCCGCGGTACCAGAGTGGGAG 1248
||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 969 AAGGTTAGATCTTTGCCAGTGGTTTCGGTGAATGATATATCCGCGGTACCAGAGTGGGAG 1028
Query 1249 TCACCAACAGAGAGGCCACTGGTGATGAATTCTTGTCCGATTTCGAATGAGCTGCAGATT 1308
|||||||||| |||||||||||| ||||| || ||| ||||||||||||| ||| ||||
Sbjct 1029 TCACCAACAGCGAGGCCACTGGTAATGAACTCACGTCGGATTTCGAATGAGATGCGGATT 1088
Query 1309 CAGCCAGAGCAACTACCGCTAAACAAAGAGGAA-A-TC------ATC-AA------A--- 1350
|||||||||||||| |||| ||| | ||||||| | || ||| || |
Sbjct 1089 CAGCCAGAGCAACTTCCGCCAAAGATAGAGGAACAATCGTCTGGATCCAATGCTGTAAAA 1148
Query 1351 --CAA----TTCTGTGAGATTGTTGGATTGCATCCAGATGTCGCAGTCGCTTACCTCGAG 1404
||| |||||||| ||||||||| |||||||||||||||||||||||||||||
Sbjct 1149 ATCAAGGACTTCTGTGATATTGTTGGAACACATCCAGATGTCGCAGTCGCTTACCTCGAC 1208
Query 1405 CGTTGCCAATGG-AGTTTACAAGTTGCCATCGACTATTTCATGAATGAGGC-ATA--T-- 1458
|| ||| ||||| | | |||||| |||||| ||||||||||| | |||| ||| |
Sbjct 1209 CGCTGCAAATGGCA-TGTACAAGAGGCCATCAACTATTTCATGGACGAGGGTATACGTCC 1267
Query 1459 ------T---T-CACAGAGGATGTAACATCCAACCCGCCTCTTCCATTGATAGGACTACC 1508
| | | ||||||||||||||||||| |||||| |||||||||||||| ||||
Sbjct 1268 AACAACTGGGTTCTCAGAGGATGTAACATCCAATCCGCCTGTTCCATTGATAGGATTACC 1327
Query 1509 TTCACAATCACAGTTTCAGGCTT-CGGGGAGCTCTTTTTCTAGTTTGACGAACATTGACC 1567
||||||||||||||||||||||| | || ||||||| ||||||||||| |||||| ||||
Sbjct 1328 TTCACAATCACAGTTTCAGGCTTTCAGG-AGCTCTTCTTCTAGTTTGATGAACATAGACC 1386
Query 1568 CGAC 1571
||||
Sbjct 1387 CGAC 1390
Score = 444 bits (240), Expect = 1e-123
Identities = 292/318 (92%), Gaps = 0/318 (0%)
Strand=Plus/Plus
Query 1674 TGAGGAAGATTTAAGCACGGAGACATTTCTTGATCCTCAGGCCATCCAAGGCTGGACAAG 1733
||||||||||| ||||| ||| ||||||| |||||||| | ||||||||| | |||||||
Sbjct 1484 TGAGGAAGATTCAAGCATGGAAACATTTCATGATCCTCTGACCATCCAAGACAGGACAAG 1543
Query 1734 TGTGGGGCATGAAGCTGCACCGACTACAATTACACTAACTATCTACTTGGACGATGGTGG 1793
||||| |||| ||| |||||||||||| ||||||||||||||||||||| ||||||| ||
Sbjct 1544 TGTGGAGCATCAAGTTGCACCGACTACTATTACACTAACTATCTACTTGCACGATGGGGG 1603
Query 1794 GTCTGTGACACCGGTATATATTCCTTTTAGATCAGACCAAACCGTCAGAGACATCCGCAA 1853
|||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1604 GTCTGTGATACCGGTAGATATTCCTTTTAGATCAGACCAAACCGTCAGAGACATCCGCAA 1663
Query 1854 TGCCATTGACGAGCTAACACCAGCTAACAACAGATATTACGATTTGCGCTCAGTGGGTGG 1913
|||||||||||||| |||||||| |||| ||||| ||||| |||||| |||||||||||
Sbjct 1664 TGCCATTGACGAGCGAACACCAGATAACGACAGAGATTACTATTTGCAATCAGTGGGTGG 1723
Query 1914 AGAAGATGATTGCAGGGATATGAATGCAACTGTAGGCAAAATTTGTAAGAGTGGTTCTAC 1973
|||||||||||||| ||||||||||||||||||||| ||||||||||||||||||| |||
Sbjct 1724 AGAAGATGATTGCAAGGATATGAATGCAACTGTAGGAAAAATTTGTAAGAGTGGTTTTAC 1783
Query 1974 AACTCTCCACCAGGTCTT 1991
||||||||||||||||||
Sbjct 1784 AACTCTCCACCAGGTCTT 1801
Score = 374 bits (202), Expect = 2e-102
Identities = 343/405 (85%), Gaps = 34/405 (8%)
Strand=Plus/Plus
Query 32 TCCCGCCCAAATTT-AAGACGACGATGACTAATCCAATGGAAGTGGACCGAATCAGCGAT 90
|||||||| ||||| |||||||||||| || |||||| ||||||| |||||||| ||||
Sbjct 1 TCCCGCCC-AATTTGAAGACGACGATGGCTGATCCAACGGAAGTGAACCGAATCTGCGAC 59
Query 91 GAAACTGGAGCATATCGAGAAGAAGCACTCTATTACCTCGAAGCATACGACTGGAATTTA 150
||||||||||||| ||||||||||||||||||||||||||||| |||||| ||||||||
Sbjct 60 GAAACTGGAGCATCTCGAGAAGAAGCACTCTATTACCTCGAAGGATACGATTGGAATTTG 119
Query 151 GCTCCGGCGATGGAAGCTTGCGGCGTCAAAACCTTGCCTTCCGTCAAGGTCAAATCTTCA 210
||| ||||| ||||||||||| ||||||||||||||||||||||||| |||||||||||
Sbjct 120 GCTACGGCGGTGGAAGCTTGCCGCGTCAAAACCTTGCCTTCCGTCAAAGTCAAATCTTCG 179
Query 211 CCGGTAG-TTTCAGTTA-CAGAGCAGTCCACGGCGGAGGAATATTCAGCTACTCCATTAA 268
|||| || ||||||||| | ||||| |||||||||| ||| | ||||||||||||| |||
Sbjct 180 CCGG-AGATTTCAGTTAAC-GAGCAATCCACGGCGGCGGAGTCTTCAGCTACTCCAGTAA 237
Query 269 CGATAATTCCACCTCGGGTTTCGAATCAGGATCC---AA----G--A---TCGATCAATT 316
|||||| ||||||||||||||||||||||| ||| || | | ||||||||||
Sbjct 238 CGATAAATCCACCTCGGGTTTCGAATCAGGGTCCGTCAACACCGCCAAGATCGATCAATT 297
Query 317 ATCCAAGTCTGACTTCGAATCCG-TTGCCGCCAAGAAAAAGAAGCCATTCAGGACGGGTT 375
||||||||| || |||||||| | || |||||||||||||| | || | | ||
Sbjct 298 ATCCAAGTCGGATTTCGAATCAGATT-CCGCCAAGAAAAAG--G--AT-C-G------TT 344
Query 376 TTGAATCCGCCGCAGGAACTATCG-CATGAATTGAAGCAAGAACG 419
||||||||| || ||||||||||| | ||||| ||||||||||||
Sbjct 345 TTGAATCCGGCGAAGGAACTATCGTC-TGAATCGAAGCAAGAACG 388
Score = 307 bits (166), Expect = 2e-82
Identities = 325/395 (82%), Gaps = 38/395 (10%)
Strand=Plus/Plus
Query 484 CGCTTCAATTGGGACGTGGAGAGAGCCGGGGCCCAATACTATGAGGATCGAGA-T--CAG 540
|||||||||||||| |||||||||||||||| ||| |||| | | | ||| | | |||
Sbjct 399 CGCTTCAATTGGGATGTGGAGAGAGCCGGGGACCATTACTGTAACCAGCGATATTCGCAG 458
Query 541 CAGCGTACTTC--AT----ATGA-T-CG-TA---CGGAGATTGATCAGTCGTATTTGCAG 588
||||||||||| || |||| | | || ||||||||||||||||||||||||||
Sbjct 459 CAGCGTACTTCATATGCCGATGATTGGGATATTCCGGAGATTGATCAGTCGTATTTGCAG 518
Query 589 CGGTTTCAAGAGGGTTATACGCC---GATGATTGGGGTTTCGAATTTGGAAGGATTCTCA 645
| ||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||
Sbjct 519 CAGTTTCAAGAGGGTTATATGCCACCGATGATTGGGGTTTCGAATTTGGAAGGATTCTCA 578
Query 646 CAAAATGAAACATCGAC----T-----ATGGATTTGATGCAGCATAGTGCTCCGCCTCTT 696
||| |||||||||| || | |||||||||||| | ||||||||||||||||||
Sbjct 579 CAAGATGAAACATCCACGGCGTTGGCTATGGATTTGATGGACCATAGTGCTCCGCCTCTT 638
Query 697 CCATCGTTACATTTACCTTCAGAATCTCAGTTTCATGATTCTGTTGGTTATCAATTAGGG 756
||||| ||| ||||||||||| |||||||||||||| |||| |||| |||||| | ||
Sbjct 639 CCATCATTAGATTTACCTTCACTATCTCAGTTTCATGCTTCTCTTGGCTATCAAATCGGC 698
Query 757 GACCACTCTTCTTCTTTTTCTGGATT-GATGAACGTTGATGTGGATGAGTTTGGAGATGT 815
| |||||||||| | ||| ||| |||||||||||||||||||||| | |||||| |
Sbjct 699 -A--ACTCTTCTTCCT---CTG-ATTTGATGAACGTTGATGTGGATGAGATGGGAGATTT 751
Query 816 ATACGATATACCTATAATGTCTTCATCGTCTCAAG 850
| ||||| |||||||||||||||| | |||||||
Sbjct 752 ACACGATGTACCTATAATGTCTTC--C-TCTCAAG 783
> Ahg924514 jgi|Araly1|924514|scaffold_200075.1
Length=406
Score = 228 bits (123), Expect = 1e-58
Identities = 206/243 (85%), Gaps = 17/243 (7%)
Strand=Plus/Plus
Query 478 CTCGAGCGCTTCAATTGGGACGTGGAGAGAGCCGGGGCCCAATACTATGAGGATCGAGA- 536
||||||||||| | |||||| |||||||||||||||| ||| |||| ||| | ||| |
Sbjct 2 CTCGAGCGCTTTATTTGGGATGTGGAGAGAGCCGGGGACCATTACTGTGACCAGCGATAT 61
Query 537 -T-CAGCAGCGTACTTCATATGATCGTACGGAGATTGATCAGTCGTATTTGCAGCGGTTT 594
| ||||| ||||||||||||| | |||||||||||||||||| ||||||| |||||
Sbjct 62 TTGCAGCATCGTACTTCATATG--C---CGGAGATTGATCAGTCGTCTTTGCAGGGGTTT 116
Query 595 CAAGAGGGTTATACGCCGATGATTGGGGTTTCGAATTTGGAAGGATTCTCACAAAATGAA 654
||||||||| ||| |||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 117 CAAGAGGGTCATATGCCGATGATTGGGGTTTCGAATTTGGAACGATTCTCACAAGATGAA 176
Query 655 ACATCGAC---T------ATGGATTTGATGCAGCATAGTGCTCCGCCTCTTCCATCGTTA 705
|||||||| | |||||||||||| | | |||||||||||||||||||||||||
Sbjct 177 ACATCGACGGCTTTGGTTATGGATTTGATGGACCTTAGTGCTCCGCCTCTTCCATCGTTA 236
Query 706 CAT 708
|||
Sbjct 237 CAT 239
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75342504610
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5