BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G33040.1
Length=1402
Score E
Sequences producing significant alignments: (Bits) Value
Ahg933884 jgi|Araly1|933884|scaffold_401872.1 1714 0.0
> Ahg933884 jgi|Araly1|933884|scaffold_401872.1
Length=1024
Score = 1714 bits (928), Expect = 0.0
Identities = 989/1019 (97%), Gaps = 1/1019 (0%)
Strand=Plus/Plus
Query 119 CGATCAATCCTTTAATCAATGGCAATGGCTGTTTTCCGTCGCGAAGGGAGGCGTCTCCTC 178
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 7 CGATCAATCCTTTAATCAATGGCAATGGCTGTTTTCCGTCGTGAAGGGAGGCGTCTCCTC 66
Query 179 CCTTCAATCGCCGCTCGCCCAATCGCTGCTATCCGATCTCCTCTCTCTTCTGACCAGGAG 238
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 67 CCTTCAATCGCTGCTCGCCCAATCGCTGCTATCCGATCTCCTCTCTCTTCTGACCAGGAG 126
Query 239 GAAGGACTTCTTGGAGTTCGATCTATCTCAACTCAAGTGGTGCGTAACCGCATGAAGAGT 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 127 GAAGGACTTCTTGGAGTTCGATCTATCTCAACTCAAGTGGTGCGTAACCGCATGAAGAGT 186
Query 299 GTTAAGAACATCCAAAAGATCACAAAGGCAATGAAGATGGTTGCTGCTTCCAAGCTTAGA 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 187 GTTAAGAACATCCAAAAGATCACAAAGGCAATGAAGATGGTTGCTGCTTCCAAGCTTAGA 246
Query 359 GCAGTTCAAGGCCGAGCTGAGAACTCCCGTGGACTTTGGCAGCCATTTACTGCACTTCTA 418
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 247 GCAGTTCAAGGCAGAGCTGAGAACTCCCGTGGACTTTGGCAGCCATTTACTGCACTTCTA 306
Query 419 GGAGATAATCCCAGCATTGATGTAAAGAAGAGTGTGGTGGTCACTCTCTCTTCTGACAAG 478
||||||||||||||||||||||| |||||||| || ||||||||||||||||||||||||
Sbjct 307 GGAGATAATCCCAGCATTGATGTTAAGAAGAGCGTCGTGGTCACTCTCTCTTCTGACAAG 366
Query 479 GGTCTCTGTGGTGGAATCAACTCCACTGTCGTTAAAGTGAGCAGGGCTCTGTACAAATTG 538
||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 367 GGTCTCTGTGGTGGAATTAACTCCACTGTTGTTAAAGTGAGCAGGGCTCTGTACAAATTG 426
Query 539 AATGCTGGTCCTGAAAAGGAAGTTCAGTTTGTTATTGTCGGAGAGAAAGCAAAGGCTATA 598
||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 427 AATTCTGGTCCTGAAAAAGAAGTTCAGTTTGTTATTGTCGGAGAGAAAGCAAAGGCTATA 486
Query 599 ATGTTTCGTGACTCAAAGAACGACATTGTCCTCTCTGTAACAGAGCTGAATAAGAACCCA 658
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 487 ATGTTTCGTGACTCGAAGAACGACATTGTCCTCTCTGTAACAGAGCTGAATAAGAACCCA 546
Query 659 CTCAATTATGCTCAGGTGTCAGTTCTAGCTGATGACATCCTGAAGAACGTTGAATTTGAT 718
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 547 CTCAATTATGCTCAGGTCTCAGTTCTAGCTGATGACATCCTGAAGAACGTTGAATTTGAT 606
Query 719 GCTTTGCGCATTGTCTACAACAAGTTCCATTCAGTTGTCGCATTTCTGCCAACTGTGTCC 778
|||||||||||||||||||||||||||||||||||||| |||||||| |||||||| |||
Sbjct 607 GCTTTGCGCATTGTCTACAACAAGTTCCATTCAGTTGTTGCATTTCTACCAACTGTCTCC 666
Query 779 ACTGTTTTGTCACCTGAGATTATTGAGAAGGAGTCTGAAATTGGAGGAAAACTTGGCGAG 838
|||||||||||||| ||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 667 ACTGTTTTGTCACCCGAGATAATTGAGAAAGAGTCTGAAATTGGAGGAAAACTTGGCGAG 726
Query 839 CTTGACTCATATGAGATTGAAGGTGGGGAAACAAAGGGAGAAATATTGCAGAATCTGGCC 898
|| ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 727 CTCGACTCGTATGAGATTGAAGGTGGTGAAACAAAGGGAGAAATATTGCAGAATCTGGCC 786
Query 899 GAGTTCCAATTCTCTTGTGTGATGTTCAATGCGGTTCTGGAGAATGCATGTAGTGAGATG 958
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 787 GAGTTCCAATTCTCTTGTGTGATGTTCAATGCGGTTTTGGAGAATGCATGTAGTGAGATG 846
Query 959 GGAGCAAGAATGTCTGCCATGGACAGCTCAAGCAGAAACGCAGGAGAAATGCTCGACCGT 1018
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 847 GGAGCAAGAATGTCTGCCATGGACAGCTCAAGCAGAAACGCAGGAGAAATGCTTGACCGT 906
Query 1019 CTCACCCTCACATACAACAGGACTCGTCAAGCTTCTATTACAACAGAGCTTATTGAGATT 1078
||||||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 907 CTCACCCTCACTTACAACAGGACTCGTCAAGCTTCCATTACAACAGAGCTTATCGAGATT 966
Query 1079 ATCTCTGGAGCTTCTGCTCTTGAAGCTGCTAAATAAGCCCATCCGTGTTAGTTCTCTTT 1137
||||||||||||||||| |||||||| ||||||||||| |||||||||||||||| |||
Sbjct 967 ATCTCTGGAGCTTCTGCACTTGAAGCCGCTAAATAAGCACATCCGTGTTAGTTCT-TTT 1024
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52412177120
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5