BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G33070.3
Length=2085
Score E
Sequences producing significant alignments: (Bits) Value
Ahg497400 jgi|Araly1|497400|fgenesh2_kg.348__1__AT2G33070.1 2398 0.0
Ahg482246 jgi|Araly1|482246|fgenesh2_kg.4__1306__AT2G33070.1 2392 0.0
Ahg929465 jgi|Araly1|929465|scaffold_301922.1 1471 0.0
Ahg479094 jgi|Araly1|479094|fgenesh2_kg.3__1795__AT3G16410.1 1140 0.0
> Ahg497400 jgi|Araly1|497400|fgenesh2_kg.348__1__AT2G33070.1
Length=1563
Score = 2398 bits (1298), Expect = 0.0
Identities = 1485/1575 (94%), Gaps = 13/1575 (1%)
Strand=Plus/Plus
Query 93 ATGTAACAATCGTTAGTTTCTTTCTCAGCCTCAGGTAAGCTGTCCCCACATATCCCTCCC 152
|||||||||||||||||||| ||||||||||||||| |||| |||||||||||| |||||
Sbjct 1 ATGTAACAATCGTTAGTTTC-TTCTCAGCCTCAGGTCAGCTCTCCCCACATATCTCTCCC 59
Query 153 TCTTTCTAATTATCTGATTGTAGTTTGTATAATGTTTTG-TTGTATTCGTAAGACTTGAT 211
|||||| |||| |||||||||||||||||| | |||| || ||||||||||| |||||
Sbjct 60 TCTTTC---TTATATGATTGTAGTTTGTATAA-GATTTGATTATATTCGTAAGATTTGAT 115
Query 212 CAACTTGCAAGCAAAAGAGATGGTGCAAAAGGTGGAAGCAAGGGGTGGTGAGATAGGAGA 271
| ||| ||||||||||||||||| |||||||||||||||| ||||||||||||||||||
Sbjct 116 C-ACTCGCAAGCAAAAGAGATGGCACAAAAGGTGGAAGCAAAGGGTGGTGAGATAGGAGA 174
Query 272 TGTATGGGATGATGGTGCTTACGACGGTGTTAGAAAAGTATACGTAGGGCAAGGCGAAGA 331
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 175 TGTATGGGATGATGGTTCTTACGACGGTGTTAGAAAAGTATACGTAGGGCAAGGCGAAGA 234
Query 332 TGGTATAGCCTTCGTCAAGTTTGAGTATGTCAATGGTTCTCAAGAGGTTGTTGGAGATGA 391
|||||| ||||||||||||||||||||||||||||||||||||| ||||||||| |||||
Sbjct 235 TGGTATCGCCTTCGTCAAGTTTGAGTATGTCAATGGTTCTCAAGTGGTTGTTGGCGATGA 294
Query 392 ACGTGGGAAGAAGACTTTGCTAGGAGCTGAGGAGTTTGAGGTTGATCCGGATGACTACAT 451
|||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct 295 ACGTGGGAAGAAGACTTTGCTAGGAGCTGAGGAGTTTGAGGTTGATGCAGATGACTACAT 354
Query 452 CGTATACGTGGAAGGTTATCATGAGAAAGTTTTTGGGGTAACAACAAAAGAAATCATCTC 511
|||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||
Sbjct 355 AGTATACGTGGAAGGTTATCATGAGAAAGTTTTTGGGGTCTCAACAAAAGAGATCATCTC 414
Query 512 CACTCTTACTTTCAAGACTTATAAAGGCAAAACTTCTCCGCCGTTTGGAATCGTCTCGGG 571
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 415 AACTCTTACGTTCAAGACTTATAAAGGCAAAACTTCTCCGCCGTTTGGAATCGTCTCCGG 474
Query 572 GACAAAGTTTGTCCTCCAAGGTGGCAAAATCGTTGGGTTTCACGGACGTTCTACCGATGT 631
||| ||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 475 GACCAAGTTTGTCCTCCAAGGTGGCAAAATCGTTGGGTTTCACGGACGTTCCACTGATGT 534
Query 632 TTTGCACTCACTTGGAGCCTATATATCATCGCCGGCCACTCCCAAATTGCGTGGAAAGTG 691
|||||||||||||||||||||||| || | |||| ||||||| |||||||||||||||||
Sbjct 535 TTTGCACTCACTTGGAGCCTATATTTCTTTGCCGTCCACTCCAAAATTGCGTGGAAAGTG 594
Query 692 GATTAAGGTAGTAGTGGAGCAAAAAGGAGAGGGTCCAGGGCCAAGATGCTCACATGACAT 751
|| ||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 595 GA-TAA---AG--GTGGAGCAAAAAGGAGAGGGTCCAGGGCCAAGATGCTCACATGACAT 648
Query 752 AGCACAGGTGGGAAACAAAATTTTCTCATTTGGTGGTGAGCTCACACCAAATCAGCCCAT 811
|||||| || |||||||| |||| ||| ||||||||||||||||||||||||||||||||
Sbjct 649 AGCACAAGTAGGAAACAAGATTTACTCCTTTGGTGGTGAGCTCACACCAAATCAGCCCAT 708
Query 812 AGACAAACACCTTTACGTTTTTGACCTCGAGACCAGGACTTGGTCCATTTCTCCAGCCAC 871
|||||||||||||| || || |||||||||||| |||||||||||||||||||||||||
Sbjct 709 CGACAAACACCTTTATGTCTTCGACCTCGAGACCCGGACTTGGTCCATTTCTCCAGCCAC 768
Query 872 CGGAGACGTTCCAAACCTCTCTTGCTTAGGCGTCCGTATGGTGTCAATTGGATCAAGCCT 931
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 769 CGGAGACGTTCCAAACCTCTCTTGCTTAGGCGTCCGTATGGTGTCAATTGGATCAAGCCT 828
Query 932 CTATGTCTTTGGAGGCCGAGACGCTTCACGCAAATACAACGGCTTCTACTCGTTTGACAC 991
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 829 CTATGTCTTTGGAGGCCGAGACGCTTCACGAAAATACAACGGCTTCTACTCGTTTGATAC 888
Query 992 GACCAAGAACGAGTGGAAACTGCTAACTCCGGTCGAACAAGGACCCACTCCTCGTAGCTT 1051
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 889 GATCAAGAACGAGTGGAAACTGCTAACTCCGGTCGAACAAGGACCCACTCCTCGTAGCTT 948
Query 1052 CCACTCGATGACCGCAGATGAGAACAACGTTTACGTTTTCGGTGGAGTGAGTGCTACGGT 1111
|||||||||| | || |||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 949 CCACTCGATGGCAGCCGATGAGAAAAACGTTTACGTTTTCGGTGGAGTGAGCGCTACGGT 1008
Query 1112 TCGGCTCAAGACACTAGACGCTTACAACATCGTTGATCACAAGTGGGTGCAGTGTTCGAC 1171
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1009 TCGGCTCAAGACACTAGACGCTTACAACATCGTTGATCACAAGTGGGTTCAGTGTTCGAC 1068
Query 1172 CCCGGGAGGTTCGTGTAGCGTAAGAGGAGGAGCCGGGCTCGAAGTGGTTCAAGGGAAAGT 1231
|||||||||||| | |||| |||||||||||||||||||||||||||| |||||||| ||
Sbjct 1069 CCCGGGAGGTTCCTTTAGCATAAGAGGAGGAGCCGGGCTCGAAGTGGTACAAGGGAAGGT 1128
Query 1232 ATGGGTTGTGTATGGATTCAACGGATGTGAAGTAGATGATGTTCATTGCTACGATCCAGC 1291
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 1129 ATGGGTTGTGTATGGATTCAACGGATGTGAAGTTGATGATGTTCATTGCTACGATCCTGT 1188
Query 1292 TCAAGACAAGTGGACACAAGTGGAGACGTTCGGTGAGAAGCCTTGCGCTAGGAGTGTGTT 1351
|||||||||||||||||||||||| |||||||||||||||||||| || |||||||||||
Sbjct 1189 TCAAGACAAGTGGACACAAGTGGAAACGTTCGGTGAGAAGCCTTGTGCGAGGAGTGTGTT 1248
Query 1352 CGCTAGTGCGGTTGTTGGGAAACACATTTTGGTCTTTGGAGGTGAGATAGCGATGGACCC 1411
|||||||||||||||||||||| || ||||| ||||||||||||||||||||||||||||
Sbjct 1249 CGCTAGTGCGGTTGTTGGGAAATACCTTTTGATCTTTGGAGGTGAGATAGCGATGGACCC 1308
Query 1412 AAAAGCTCACGAAGGTCCGGGTCAATTGAGTGGTGGAACTTTTGCGTTGGATACAGAGAC 1471
|||||||||||| ||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 1309 AAAAGCTCACGAGGGTCCGGGTCAATTGAGTGGTGGGACTTTTGCGTTTGATACAGAGAC 1368
Query 1472 GTTGAAGTGGGAGAAGCTGGATAAGTTAGGTGAAGAGGAAGAGACTCCGAGTATCAGAGG 1531
||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 1369 GTTGAAGTGGGAGAAGCTGGATAAGTTTGGTGAAGAGGAAGAGACTCCAAGTATCAGAGG 1428
Query 1532 TTGGTCTGCGTCCACGACAGGTACCATTGATGGTAAGAAAGGACTGGTGATGTTTGGTGG 1591
||||||||||||||||| || |||||||||||||||||||||||||||||| |||||||
Sbjct 1429 ATGGTCTGCGTCCACGACTGGGACCATTGATGGTAAGAAAGGACTGGTGATGCTTGGTGG 1488
Query 1592 GAAAGCTCAAACCAATGATCGGTTTGGTGATCTCTTCTTTTATGGAGTTGACTCTGCATA 1651
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1489 GAAAGCTCAAACTAATGATCGGTTTGGTGATCTCTTCTTTTATGGAGTTGACTCTGCATA 1548
Query 1652 AACGCTGTTCGGTGA 1666
|||||||||| |||
Sbjct 1549 GACGCTGTTCGTTGA 1563
> Ahg482246 jgi|Araly1|482246|fgenesh2_kg.4__1306__AT2G33070.1
Length=1592
Score = 2392 bits (1295), Expect = 0.0
Identities = 1484/1575 (94%), Gaps = 14/1575 (1%)
Strand=Plus/Plus
Query 93 ATGTAACAATCGTTAGTTTCTTTCTCAGCCTCAGGTAAGCTGTCCCCACATATCCCTCCC 152
|||||||||||||||||||| ||||||||||||||| |||| |||||||||||| |||||
Sbjct 1 ATGTAACAATCGTTAGTTTC-TTCTCAGCCTCAGGTCAGCTCTCCCCACATATCTCTCCC 59
Query 153 TCTTTCTAATTATCTGATTGTAGTTTGTATAATGTTTTG-TTGTATTCGTAAGACTTGAT 211
|||||| |||| |||||||||||||||||| | |||| || ||||||||||| |||||
Sbjct 60 TCTTTC---TTATATGATTGTAGTTTGTATAA-GATTTGATTATATTCGTAAGATTTGAT 115
Query 212 CAACTTGCAAGCAAAAGAGATGGTGCAAAAGGTGGAAGCAAGGGGTGGTGAGATAGGAGA 271
| ||| ||||||||||||||||| |||||||||||||||| ||||||||||||||||||
Sbjct 116 C-ACTCGCAAGCAAAAGAGATGGCACAAAAGGTGGAAGCAAAGGGTGGTGAGATAGGAGA 174
Query 272 TGTATGGGATGATGGTGCTTACGACGGTGTTAGAAAAGTATACGTAGGGCAAGGCGAAGA 331
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 175 TGTATGGGATGATGGTTCTTACGACGGTGTTAGAAAAGTATACGTAGGGCAAGGCGAAGA 234
Query 332 TGGTATAGCCTTCGTCAAGTTTGAGTATGTCAATGGTTCTCAAGAGGTTGTTGGAGATGA 391
|||||| ||||||||||||||||||||||||||||||||||||| ||||||||| |||||
Sbjct 235 TGGTATCGCCTTCGTCAAGTTTGAGTATGTCAATGGTTCTCAAGTGGTTGTTGGCGATGA 294
Query 392 ACGTGGGAAGAAGACTTTGCTAGGAGCTGAGGAGTTTGAGGTTGATCCGGATGACTACAT 451
|||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct 295 ACGTGGGAAGAAGACTTTGCTAGGAGCTGAGGAGTTTGAGGTTGATGCAGATGACTACAT 354
Query 452 CGTATACGTGGAAGGTTATCATGAGAAAGTTTTTGGGGTAACAACAAAAGAAATCATCTC 511
|||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||
Sbjct 355 AGTATACGTGGAAGGTTATCATGAGAAAGTTTTTGGGGTCTCAACAAAAGAGATCATCTC 414
Query 512 CACTCTTACTTTCAAGACTTATAAAGGCAAAACTTCTCCGCCGTTTGGAATCGTCTCGGG 571
|||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 415 AACTCTTACGTTCAAGACTTATAAAGGCAAAACTTCTCCGCCGTTTGGAATTGTCTCCGG 474
Query 572 GACAAAGTTTGTCCTCCAAGGTGGCAAAATCGTTGGGTTTCACGGACGTTCTACCGATGT 631
||| ||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 475 GACCAAGTTTGTCCTCCAAGGTGGCAAAATCGTTGGGTTTCACGGACGTTCCACTGATGT 534
Query 632 TTTGCACTCACTTGGAGCCTATATATCATCGCCGGCCACTCCCAAATTGCGTGGAAAGTG 691
|||||||||||||||||||||||| || | |||| ||||||| |||||||||||||||||
Sbjct 535 TTTGCACTCACTTGGAGCCTATATTTCTTTGCCGTCCACTCCAAAATTGCGTGGAAAGTG 594
Query 692 GATTAAGGTAGTAGTGGAGCAAAAAGGAGAGGGTCCAGGGCCAAGATGCTCACATGACAT 751
|| ||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 595 GA-TAA---AG--GTGGAGCAAAAAGGAGAGGGTCCAGGGCCAAGATGCTCACATGACAT 648
Query 752 AGCACAGGTGGGAAACAAAATTTTCTCATTTGGTGGTGAGCTCACACCAAATCAGCCCAT 811
|||||| || |||||||| |||| ||| ||||||||||||||||||||||||||||||||
Sbjct 649 AGCACAAGTAGGAAACAAGATTTACTCCTTTGGTGGTGAGCTCACACCAAATCAGCCCAT 708
Query 812 AGACAAACACCTTTACGTTTTTGACCTCGAGACCAGGACTTGGTCCATTTCTCCAGCCAC 871
|||||||||||||| || || |||||||||||| |||||||||||||||||||||||||
Sbjct 709 CGACAAACACCTTTATGTCTTCGACCTCGAGACCCGGACTTGGTCCATTTCTCCAGCCAC 768
Query 872 CGGAGACGTTCCAAACCTCTCTTGCTTAGGCGTCCGTATGGTGTCAATTGGATCAAGCCT 931
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 769 CGGAGACGTTCCAAACCTCTCTTGCTTAGGCGTCCGTATGGTGTCAATTGGATCAAGCCT 828
Query 932 CTATGTCTTTGGAGGCCGAGACGCTTCACGCAAATACAACGGCTTCTACTCGTTTGACAC 991
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 829 CTATGTCTTTGGAGGCCGAGACGCTTCACGAAAATACAACGGCTTCTACTCGTTTGATAC 888
Query 992 GACCAAGAACGAGTGGAAACTGCTAACTCCGGTCGAACAAGGACCCACTCCTCGTAGCTT 1051
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 889 GATCAAGAACGAGTGGAAACTGCTAACTCCGGTCGAACAAGGACCCACTCCTCGTAGCTT 948
Query 1052 CCACTCGATGACCGCAGATGAGAACAACGTTTACGTTTTCGGTGGAGTGAGTGCTACGGT 1111
|||||||||| | || |||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 949 CCACTCGATGGCAGCCGATGAGAAAAACGTTTACGTTTTCGGTGGAGTGAGCGCTACGGT 1008
Query 1112 TCGGCTCAAGACACTAGACGCTTACAACATCGTTGATCACAAGTGGGTGCAGTGTTCGAC 1171
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1009 TCGGCTCAAGACACTAGACGCTTACAACATCGTTGATCACAAGTGGGTTCAGTGTTCGAC 1068
Query 1172 CCCGGGAGGTTCGTGTAGCGTAAGAGGAGGAGCCGGGCTCGAAGTGGTTCAAGGGAAAGT 1231
|||||||||||| | |||| |||||||||||||||||||||||||||| |||||||| ||
Sbjct 1069 CCCGGGAGGTTCCTTTAGCATAAGAGGAGGAGCCGGGCTCGAAGTGGTACAAGGGAAGGT 1128
Query 1232 ATGGGTTGTGTATGGATTCAACGGATGTGAAGTAGATGATGTTCATTGCTACGATCCAGC 1291
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 1129 ATGGGTTGTGTATGGATTCAACGGATGTGAAGTTGATGATGTTCATTGCTACGATCCTGT 1188
Query 1292 TCAAGACAAGTGGACACAAGTGGAGACGTTCGGTGAGAAGCCTTGCGCTAGGAGTGTGTT 1351
|||||||||||||||||||||||| |||||||||||||||||||| || |||||||||||
Sbjct 1189 TCAAGACAAGTGGACACAAGTGGAAACGTTCGGTGAGAAGCCTTGTGCGAGGAGTGTGTT 1248
Query 1352 CGCTAGTGCGGTTGTTGGGAAACACATTTTGGTCTTTGGAGGTGAGATAGCGATGGACCC 1411
|||||||||||||||||||||| || ||||| ||||||||||||||||||||||||||||
Sbjct 1249 CGCTAGTGCGGTTGTTGGGAAATACCTTTTGATCTTTGGAGGTGAGATAGCGATGGACCC 1308
Query 1412 AAAAGCTCACGAAGGTCCGGGTCAATTGAGTGGTGGAACTTTTGCGTTGGATACAGAGAC 1471
|||||||||||| ||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 1309 AAAAGCTCACGAGGGTCCGGGTCAATTGAGTGGTGGGACTTTTGCGTTTGATACAGAGAC 1368
Query 1472 GTTGAAGTGGGAGAAGCTGGATAAGTTAGGTGAAGAGGAAGAGACTCCGAGTATCAGAGG 1531
||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 1369 GTTGAAGTGGGAGAAGCTGGATAAGTTTGGTGAAGAGGAAGAGACTCCAAGTATCAGAGG 1428
Query 1532 TTGGTCTGCGTCCACGACAGGTACCATTGATGGTAAGAAAGGACTGGTGATGTTTGGTGG 1591
||||||||||||||||| || |||||||||||||||||||||||||||||| |||||||
Sbjct 1429 ATGGTCTGCGTCCACGACTGGGACCATTGATGGTAAGAAAGGACTGGTGATGCTTGGTGG 1488
Query 1592 GAAAGCTCAAACCAATGATCGGTTTGGTGATCTCTTCTTTTATGGAGTTGACTCTGCATA 1651
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1489 GAAAGCTCAAACTAATGATCGGTTTGGTGATCTCTTCTTTTATGGAGTTGACTCTGCATA 1548
Query 1652 AACGCTGTTCG-GTG 1665
|||||||||| |||
Sbjct 1549 GACGCTGTTCGTGTG 1563
Score = 52.8 bits (28), Expect = 1e-05
Identities = 28/28 (100%), Gaps = 0/28 (0%)
Strand=Plus/Plus
Query 1692 TGTGTGTGTGATGCAATAAGGGAGGGTC 1719
||||||||||||||||||||||||||||
Sbjct 1560 TGTGTGTGTGATGCAATAAGGGAGGGTC 1587
> Ahg929465 jgi|Araly1|929465|scaffold_301922.1
Length=1450
Score = 1471 bits (796), Expect = 0.0
Identities = 1238/1449 (85%), Gaps = 40/1449 (3%)
Strand=Plus/Plus
Query 218 GCAAGCAAAAGAGATGGTGC-AAAAGGTGGAAGCAAGGGGTGGTGAGATAGGAGATGTAT 276
||||||||||||||||| | ||||| | ||||||| ||||||||||| ||||||||||
Sbjct 8 GCAAGCAAAAGAGATGG-CCAAAAAGCTAGAAGCAAAGGGTGGTGAGACGGGAGATGTAT 66
Query 277 GGGATGATGGTGCTTACGACGGTGTTAGAAAAGTATACGTAGGGCAAGGCGAAGATGGTA 336
|||||||||||| |||||| ||||||||| ||||| |||||||||||| || ||||||
Sbjct 67 GGGATGATGGTGTTTACGAAAATGTTAGAAAGGTATATGTAGGGCAAGGCCAATATGGTA 126
Query 337 TAGCCTTCGTCAAGTTTGAGTATGTCAATGGTTCTCAAG-AGGTTGTTGGAGATGAACGT 395
||||||||||||||||||||||||||||||||||||||| | |||||||||||||||| |
Sbjct 127 TAGCCTTCGTCAAGTTTGAGTATGTCAATGGTTCTCAAGTA-GTTGTTGGAGATGAACAT 185
Query 396 GGGAA-GAAGACTTTGCTAGGAGCTGAGGAGTTTGAGGTTGATCCGGATGACTACATCGT 454
|||| |||||| |||||||| ||| ||||||||| ||||| ||||||||||||||||
Sbjct 186 -GGAACGAAGACAAAGCTAGGAGTTGATGAGTTTGAGATTGATGCGGATGACTACATCGT 244
Query 455 ATACGTGGAAGGTTATCATGAGAAAGTTTTTGGGGTAACAACAAAAGAAATCATCTCCAC 514
||||||||||||||| | |||||||| || | | | || |||||| ||| |
Sbjct 245 ATACGTGGAAGGTTACCGTGAGAAAG--TTAACGAT-ATGACCTCAGAAATGATCACGTT 301
Query 515 TCTTACTTTCAAGACTTATAAAGGCAAAACTTCTCCGCCGT-TTGGAA-TCG-TCTCGGG 571
|||| | |||||||||| || ||||||||| |||| || | | | || | || |||
Sbjct 302 TCTTTCATTCAAGACTTTTACAGGCAAAACCTCTCATCC-TATCGAAAGAAGACCT-GGG 359
Query 572 GACAAAGTTTGTCCTCCAAGGTGGCAAAA-TCGTTGGGTTTCACGGACGTTCTACCGATG 630
| |||||||| || |||||||| |||| |||||||||||||||||||||| ||||| |
Sbjct 360 G-TTAAGTTTGTGCTACAAGGTGG-AAAAGTCGTTGGGTTTCACGGACGTTCCACCGACG 417
Query 631 TTTTGCACTCACTTGGAGCCTATATATCATCGCCGGCCACTCCCAAATTGCGTGGAAAGT 690
|| | ||||| || || ||||| | || | |||| ||||||||||||||| ||||||||
Sbjct 418 TTCTACACTCCCTCGGGGCCTACGTTTCTTTGCCGTCCACTCCCAAATTGCTTGGAAAGT 477
Query 691 GGATTAAGGTAGTAGTGGAGCAAAAAGGAGAGGGTCCAGGGCCAAGATGCTCACATGACA 750
||||| | || ||||||||||||||||| |||||||||| |||||||||||||| ||
Sbjct 478 GGATT-A---AG--GTGGAGCAAAAAGGAGAAGGTCCAGGGCTAAGATGCTCACATGGCA 531
Query 751 TAGCACAGGTGGGAAACAAAATTTTCTCATTTGGTGGTGAGCTCACACCAAATCAGCCCA 810
||||||| | || ||||| |||| ||| |||||||||||| ||||||||||||||||||
Sbjct 532 TAGCACAAATAGGTAACAAGATTTACTCCTTTGGTGGTGAGTTCACACCAAATCAGCCCA 591
Query 811 TAGACAAACACCTTTACGTTTTTGACCTCGAGACCAGGACTTGGTCCATTTCTCCAGCCA 870
| ||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||
Sbjct 592 TCGACAAACACCTTTACGTCTTTGACCTCGAGACCCGGACTTGGTCCATTTCTCCAGCCA 651
Query 871 CCGGAGACGTTCCAAACCTCTCTTGCTTAGGCGTCCGTATGGTGTCAATTGGATCAAGCC 930
|||||||||||||| |||||||||||||||| ||||||||||||||||| || || | ||
Sbjct 652 CCGGAGACGTTCCACACCTCTCTTGCTTAGGTGTCCGTATGGTGTCAATAGGGTCGACCC 711
Query 931 TCTATGTCTTTGGAGGCCGAGACGCTTCACGCAAATACAACGGCTTCTACTCGTTTGACA 990
|||||||||||||||||||||||||||||||| | ||||| || |||||||| |||||||
Sbjct 712 TCTATGTCTTTGGAGGCCGAGACGCTTCACGCCAGTACAATGGTTTCTACTCATTTGACA 771
Query 991 CGACCA-AGAACGAGTGGAAACTGCTAACTCCGGTCGAACAAGGACCCACTCCTCGTAGC 1049
| |||| | |||||||||||||||||||||||||| ||| ||||||| |||||||||||
Sbjct 772 CAACCACA-AACGAGTGGAAACTGCTAACTCCGGTAGAAGAAGGACCAACTCCTCGTAGT 830
Query 1050 TTCCACTCGATGACCGCAGATGAG-AACAACGTTTACGTTTTCGGTGGAGTGAGTGCTAC 1108
|||||||||||| | || |||||| || |||||||||||||||||||||||| ||||||
Sbjct 831 TTCCACTCGATGGCAGCCGATGAGGAA-AACGTTTACGTTTTCGGTGGAGTGGGTGCTAG 889
Query 1109 GGTTCGGCTCAAGACACTAGACGCTTACAACATCGTTGATCACAAGTGGGTGCAGTGTTC 1168
|| || |||||||||||||| ||||||||||||||||| | |||||| | ||||| ||
Sbjct 890 GGAACGAATCAAGACACTAGACTCTTACAACATCGTTGATAAGAAGTGGTTTCAGTGCTC 949
Query 1169 GACCCCGGGAGGTTCGTGTAGCGTAAGAGGAGGAGCCGGGCTCGAAGTGGTTCAAGGGAA 1228
||| || |||| ||| | |||| ||||||||||||| |||||||||||||| ||||||||
Sbjct 950 GACTCCAGGAGATTCCTTTAGCATAAGAGGAGGAGCAGGGCTCGAAGTGGTGCAAGGGAA 1009
Query 1229 AGTATGGGTTGTGTATGGATTCAACGGATGTGAAGTAGATGATGTTCATTGCTACGATCC 1288
||||||||||||||||||||| |||||||||||| ||||||||||||||| |||||||||
Sbjct 1010 AGTATGGGTTGTGTATGGATTTAACGGATGTGAAATAGATGATGTTCATTTCTACGATCC 1069
Query 1289 AGCTCAAGACAAGT-GGACACAAGTGGAGACGTTCGGTGAGA-AGCCTTGCGCTAGGAGT 1346
||| |||||| || |||||| |||||| || || |||| || | |||| || ||||||
Sbjct 1070 TGCTGAAGACA-GTTGGACACGAGTGGAAACATTTGGTGTGAGA-CCTTCCGAAAGGAGT 1127
Query 1347 GTGTTCGCTAGTGCGGTTGTTGGGAAACACATTTTGGTCTTTGGAGGTGAGATAGCGATG 1406
|| ||||||||||||| |||||||||||||||| || | || ||||||||||| ||||||
Sbjct 1128 GTATTCGCTAGTGCGGCTGTTGGGAAACACATTGTGATGTTCGGAGGTGAGATTGCGATG 1187
Query 1407 GACCCAAAAGCTCACGAAGGTCCGGGTCAATTGAGTGG-TGGAACTTTTGCGTTGGATAC 1465
|||||| |||||||| ||||||||||||||||| | | ||| ||||| ||||||||||
Sbjct 1188 GACCCACTAGCTCACGTAGGTCCGGGTCAATTGA-TCGATGGGACTTTCACGTTGGATAC 1246
Query 1466 AGAGACGTTG-AAGTGGGAGAAGCTGGATAAGTT-AGGTGAAGAGGAAGAGACTCCGAGT 1523
|||||||||| || ||||||| | | |||||||| || ||||||||| || || | ||||
Sbjct 1247 AGAGACGTTGCAA-TGGGAGAGGTTAGATAAGTTTAG-TGAAGAGGA-GACAC-C-GAGT 1301
Query 1524 ATCAGAGGTTGGTCTGCGTCCACGACAGGTACCATTGATGGTAAGAAAGGACTGGTGATG 1583
| |||||| ||| | |||||||| || || ||||||||||||||||||||||| ||||||
Sbjct 1302 AGCAGAGGATGGACCGCGTCCACAACTGGGACCATTGATGGTAAGAAAGGACTTGTGATG 1361
Query 1584 TTTGGTGGGAAAGCTCAAACCAATGATCGGTTTGGTGATCTCTTCTTTTATGGAGTTGAC 1643
|||||| ||||||| ||||||||| ||||||| ||| ||||||||||| ||| | |||
Sbjct 1362 CATGGTGGTAAAGCTCCAACCAATGACCGGTTTGATGACCTCTTCTTTTACGGAATCGAC 1421
Query 1644 TCTGCATAA 1652
||||| |||
Sbjct 1422 TCTGCCTAA 1430
> Ahg479094 jgi|Araly1|479094|fgenesh2_kg.3__1795__AT3G16410.1
Length=1634
Score = 1140 bits (617), Expect = 0.0
Identities = 842/951 (89%), Gaps = 14/951 (1%)
Strand=Plus/Plus
Query 704 AGTGGAGCAAAAAGGAGAGGGTCCAGGGCCAAGATGCTCACATGACATAGCACAGGTGGG 763
|||||||||||||||||| |||||||||| |||||||||||||| |||||||||||| ||
Sbjct 515 AGTGGAGCAAAAAGGAGAAGGTCCAGGGCTAAGATGCTCACATGGCATAGCACAGGTAGG 574
Query 764 AAACAAAATTTTCTCATTTGGTGGTGAGCTCACACCAAATCAGCCCATAGACAAACACCT 823
||||| |||| ||| |||||||||||| ||||||||||||||||||| |||||||||||
Sbjct 575 TAACAAGATTTACTCCTTTGGTGGTGAGTTCACACCAAATCAGCCCATCGACAAACACCT 634
Query 824 TTACGTTTTTGACCTCGAGACCAGGACTTGGTCCATTTCTCCAGCCACCGGAGACGTTCC 883
|||||| ||||||||||||||| ||||||||||||| |||||||||||||||||||||||
Sbjct 635 TTACGTCTTTGACCTCGAGACCCGGACTTGGTCCATCTCTCCAGCCACCGGAGACGTTCC 694
Query 884 AAACCTCTCTTGCTTAGGCGTCCGTATGGTGTCAATTGGATCAAGCCTCTATGTCTTTGG 943
| |||||||||||||||| ||||||||||||||| | ||||| | |||||| ||||||||
Sbjct 695 ACACCTCTCTTGCTTAGGTGTCCGTATGGTGTCAGTAGGATCGACCCTCTACGTCTTTGG 754
Query 944 AGGCCGAGACGCTTCACGCAAATACAACGGCTTCTACTCGTTTGACACGACCAAGA-ACG 1002
||||||||||||||||||| |||||||||| |||||||| |||||||||||| | | |||
Sbjct 755 AGGCCGAGACGCTTCACGCCAATACAACGGTTTCTACTCATTTGACACGACC-ACACACG 813
Query 1003 AGTGGAAACTGCTAACTCCGGTCGAACAAGGACCCACTCCTCGTAGCTTCCACTCGATGA 1062
|||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||
Sbjct 814 AGTGGAAACTGCTAACTCCGGTCGAAGAAGGACCCACTCCTCGTAGTTTCCACTCGATGG 873
Query 1063 CCGCAGATGA-GAACAACGTTTACGTTTTCGGTGGAGTGAGTGCTACGGTTCGGCTCAAG 1121
| || ||||| ||| |||||||||||||||||||||||||||||||||| ||||||||
Sbjct 874 CAGCCGATGAGGAA-AACGTTTACGTTTTCGGTGGAGTGAGTGCTACGGCAAGGCTCAAG 932
Query 1122 ACACTAGACGCTTACAACATCGTTGATCACAAGTGGGTGCAGTGTTCGAC-CCCGG-GAG 1179
||||||||| ||||||||||||||||| | |||||| | ||||| ||||| ||| |||
Sbjct 933 ACACTAGACTCTTACAACATCGTTGATAAGAAGTGGTTTCAGTGCTCGACTCCCTTAGAG 992
Query 1180 GTTCGTGTAGCGTAAGAGGAGGAGCCGGGCTCGAAGTGGTTCAAGGGAAAGTATGGGTTG 1239
| | | || || |||||||||||| |||||||||||||| ||||||| ||||||||||
Sbjct 993 -TCCCT-TACCGCAAGAGGAGGAGCAGGGCTCGAAGTGGTGAAAGGGAAGGTATGGGTTG 1050
Query 1240 TGTATGGATTCAACGGATGTGAAGTAGATGATGTTCATTGCTACGATCCAGCTCAAGACA 1299
|||||||||| |||||||||||||||||||||||| ||| ||||||||| | | ||||||
Sbjct 1051 TGTATGGATTTAACGGATGTGAAGTAGATGATGTTTATTACTACGATCCTGTTGAAGACA 1110
Query 1300 AGTGGACACAAGTGGAGACGTTCGGTGAGA-AGCCTTGCGCTAGGAGTGTGTTCGCTAGT 1358
|||||||||||||||| || ||||||| || | |||| || |||||||| |||||||||
Sbjct 1111 AGTGGACACAAGTGGAAACATTCGGTGTGAGA-CCTTCCGAAAGGAGTGTATTCGCTAGT 1169
Query 1359 GCGGTTGTTGGGAAACACATTTTGGTCTTTGGAGGTGAGATAGCGATGGACCCAAAAGCT 1418
|||| |||||||||||||||| || | |||||||||||||| |||||||||||| ||||
Sbjct 1170 GCGGCTGTTGGGAAACACATTGTGATGTTTGGAGGTGAGATTGCGATGGACCCACTAGCT 1229
Query 1419 CACGAAGGTCCGGGTCAATTGAGTGGTGGAACTTTTGCGTTGGATACAGAGACGTTG-AA 1477
|||| |||||||||||||||| | ||| ||||||||||| ||||| ||||||||| ||
Sbjct 1230 CACGCGGGTCCGGGTCAATTGACCGATGGGACTTTTGCGTTAGATACGGAGACGTTGCAA 1289
Query 1478 GTGGGAGAAGCTGGATAAGTT-AGGTGAAGAGGAAGAGACTCCGAGTATCAGAGGTTGGT 1536
||||||| |||||||||||| || ||||||||| ||||||||||||| |||||| |||
Sbjct 1290 -TGGGAGAGGCTGGATAAGTTTAG-TGAAGAGGAGGAGACTCCGAGTAGCAGAGGATGGA 1347
Query 1537 CTGCGTCCACGACAGGTACCATTGATGGTAAGAAAGGACTGGTGATGTTTGGTGGGAAAG 1596
| ||||||||||| || ||||||||||||||||||||||| |||||| |||||| ||||
Sbjct 1348 CCGCGTCCACGACTGGGACCATTGATGGTAAGAAAGGACTTGTGATGCATGGTGGTAAAG 1407
Query 1597 CTCAAACCAATGATCGGTTTGGTGATCTCTTCTTTTATGGAGTTGACTCTG 1647
||| ||||||||| ||||||| ||||||||||||||| ||| | ||||||
Sbjct 1408 CTCCAACCAATGACCGGTTTGATGATCTCTTCTTTTACGGAATCCACTCTG 1458
Score = 403 bits (218), Expect = 2e-111
Identities = 392/475 (83%), Gaps = 15/475 (3%)
Strand=Plus/Plus
Query 218 GCAAGCAAAAGAGATGG-TGCAAAAGGTGGAAGCAAGGGGTGGTGAGATAGGAGATGTAT 276
||||||||||||||||| | |||||| | ||||||| ||||||||||| |||||||||||
Sbjct 8 GCAAGCAAAAGAGATGGCT-CAAAAGCTAGAAGCAAAGGGTGGTGAGACAGGAGATGTAT 66
Query 277 GGGATGATGGTGCTTACGACGGTGTTAGAAAAGTATACGTAGGGCAAGGCGAAGATGGTA 336
||||||||||||||||||| ||||||||| ||||| |||||||||||| || ||||||
Sbjct 67 GGGATGATGGTGCTTACGAAAATGTTAGAAAGGTATATGTAGGGCAAGGCCAATATGGTA 126
Query 337 TAGCCTTCGTCAAGTTTGAGTATGTCAATGGTTCTCAAGAGGTTGTTGGAGATGAACGTG 396
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 127 TAGCCTTCGTCAAGTTTGAGTATGTCAATGGTTCTCAAGTGGTTGTTGGAGATGAACATG 186
Query 397 GGAAGAAGACTTTGCTAGGAGCTGAGGAGTTTGAGGTTGATCCGGATGACTACATCGTAT 456
| || ||||| |||||||| ||||||||||||| ||||| ||||||||||||||||||
Sbjct 187 GAAAAAAGACAGAGCTAGGAGTTGAGGAGTTTGAGATTGATGCGGATGACTACATCGTAT 246
Query 457 ACGTGGAAGGTTATCATGAGAAAGTTTTTGGGGTAACAACAAAAGAAATCATCTCCACTC 516
||||||||||||| | |||||||||| | | || || ||||| ||| | ||
Sbjct 247 ACGTGGAAGGTTACCGTGAGAAAGTTAACGATATGACCTCA---GAAATGATCACGTTTC 303
Query 517 TTACTTTCAAGACTTATAAAGGCAAAACTTCTCCGCCGTTTGGAATC--GTC-TCGGGGA 573
|| || ||||||||| |||||||||||| |||| || | | ||| | | | ||||
Sbjct 304 TTTCTATCAAGACTTTTAAAGGCAAAACCTCTCATCC-TATCGAAAGAAGACCT-GGGGT 361
Query 574 CAAAGTTTGTCCTCCAAGGTGGCAAAATCGTTGGGTTTCACGGACGTTCTACCGATGTTT 633
|| |||||| || || ||||| |||||||||||||||||||||||||| |||| | |
Sbjct 362 TAA-GTTTGTGCTACACGGTGGAAAAATCGTTGGGTTTCACGGACGTTCCACCG-TCTA- 418
Query 634 TGCACTCACTTGGAGCCTATATATCATCGCCGGCCACTCCCAAATTGCGTGGAAA 688
||||| || || ||||| | || | |||| ||||||||||||| | ||||||
Sbjct 419 --CACTCCCTCGGGGCCTACGTTTCTTTGCCGTCCACTCCCAAATTACTTGGAAA 471
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78427814455
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5