BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G33090.1
Length=747
Score E
Sequences producing significant alignments: (Bits) Value
Ahg933887 jgi|Araly1|933887|scaffold_401875.1 782 0.0
> Ahg933887 jgi|Araly1|933887|scaffold_401875.1
Length=794
Score = 782 bits (423), Expect = 0.0
Identities = 653/762 (86%), Gaps = 24/762 (3%)
Strand=Plus/Plus
Query 1 ATGGTAGATCACGGTATGTTCTACTCCTCCAGGATGAGTACTCTTTCTTCCAACGGAAGA 60
|||| || ||||||| ||||| |||||||| |||||| |||||||||||||| |||||||
Sbjct 21 ATGGAAGCTCACGGTTTGTTCAACTCCTCCTGGATGAATACTCTTTCTTCCAGCGGAAGA 80
Query 61 GGCGACGCTTATACTTGCAAAAAAGCTCTTCACTTGACTCTGAATAAACCTAATGTTGTT 120
||||||||||||||||| |||||||||| ||||| |||||| |||||||||||||||
Sbjct 81 ---GACGCTTATACTTGCAACAAAGCTCTTCCCTTGAATCTGAAGAAACCTAATGTTGTT 137
Query 121 AAAGCATGTTCGGATTTGAAGAAGAATGAACATCAGATATCTCGTGATTTTGCGGCAGAG 180
|||||| ||||||| ||||||||||| |||||||||| ||||| ||||||||||||||||
Sbjct 138 AAAGCAAGTTCGGAGTTGAAGAAGAACGAACATCAGAGATCTCATGATTTTGCGGCAGAG 197
Query 181 ACTAAGAAAAAGACTGAGTTTTTGGTGTTGAAGAAGAACAAC-GATGAGAGATCTAAGAC 239
||||||||||||||||||||||||||| |||||||||| || ||||| |||||||||||
Sbjct 198 ACTAAGAAAAAGACTGAGTTTTTGGTGCCGAAGAAGAAC-ACAGATGAAAGATCTAAGAC 256
Query 240 TGGTGAAGTAACTAGAGAGAAGAAGCAATCGGCTCTACCTCTGAAACTTTCTAAAACCCC 299
| |||||| |||| |||||||||||||||||||||||||| ||||||||||||||| |||
Sbjct 257 TCGTGAAGAAACTGGAGAGAAGAAGCAATCGGCTCTACCTATGAAACTTTCTAAAAACCC 316
Query 300 TAGA--------TC-TGGAACGGGAGAGATTAAGCAAACTTTGAAGAAGCGTGGCCTTTC 350
|||| || ||||||||||||||||||||||| ||||||||| | |||||||||
Sbjct 317 TAGATTTGGGGTTCATGGAACGGGAGAGATTAAGCAAAATTTGAAGAAACCTGGCCTTTC 376
Query 351 CAAGTCTGTTCCAGAAACATCGAGGCTGA-TCAAGTTGAAGAAGCAGCCGCCTGTGAAAG 409
||||||||||||| |||||| ||||| | |||||||||||||||| | | | |||||
Sbjct 377 TAAGTCTGTTCCAGCAACATCAAGGCT-ACTCAAGTTGAAGAAGCATCAACAGGCGAAAG 435
Query 410 TATCTGACA-AACCT-AAGAGTTGTCCTGTCTTGACGAAGAACGACACGGATACGT-TGG 466
||||||| | | ||| || | ||||| |||||||| ||||||||||||||| || | | |
Sbjct 436 TATCTGA-AGACCCTAAATA-TTGTCATGTCTTGAAGAAGAACGACACGGAGAC-TCTAG 492
Query 467 AACTGTTCGAGATCGCCAAAAAATCTGCTGATTTTGCCAACGCAAAGGGAATACTCGCGT 526
|||||||||| || ||||| ||||| |||||| | || ||| ||||||| | ||||||
Sbjct 493 AACTGTTCGAAATAGCCAAGAAATCAGCTGATGTGGCTAACACAAAGGGTCTTCTCGCGG 552
Query 527 CTGAAGTAGAGACATCAATGTGTGTAGATACCCTCACTCTGCTCTTGGAGTTTCCCATCA 586
||||||||||||||||||| || ||||| || ||| || | ||| ||||||| ||||| |
Sbjct 553 CTGAAGTAGAGACATCAATCTGCGTAGACACACTCTCTTTACTCATGGAGTTCCCCATAA 612
Query 587 GCGCAAGAGATATGGAAACAAGGA-AGCTCATGGTTAGGCTAGAGCATCTTACAAAACAC 645
|||||| | ||| ||||||| || | ||||||| ||||| ||| ||||||||||||||
Sbjct 613 GCGCAACTGCTATTGAAACAA-GACGGATCATGGTGAGGCTTGAGAATCTTACAAAACAC 671
Query 646 AAGAACCGAAAAATATGCAATTCTGCTTCAAAACTTCTTCAATGTTGGAGGGAGAGTATC 705
|||||||||||||| ||||||||||| || ||||||||||||||||||| | || |||
Sbjct 672 AAGAACCGAAAAATCTGCAATTCTGCAGCAGCACTTCTTCAATGTTGGAGGCATAGCATC 731
Query 706 AGAGAGCAACAACTCAGAGAGTCCCGTAAAACTCAAGGCTAA 747
||||| ||| |||| ||||||||||||||||| |||||||||
Sbjct 732 AGAGATCAAGAACTGAGAGAGTCCCGTAAAACGCAAGGCTAA 773
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27524746074
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5