BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G33100.1
Length=3286
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482247 jgi|Araly1|482247|fgenesh2_kg.4__1307__AT2G33100.1 5361 0.0
Ahg477551 jgi|Araly1|477551|fgenesh2_kg.3__252__AT3G03050.1 514 2e-144
Ahg918929 jgi|Araly1|918929|scaffold_100210.1 340 3e-92
> Ahg482247 jgi|Araly1|482247|fgenesh2_kg.4__1307__AT2G33100.1
Length=3282
Score = 5361 bits (2903), Expect = 0.0
Identities = 3157/3283 (96%), Gaps = 4/3283 (0%)
Strand=Plus/Plus
Query 1 ATGGCTTCAAGTCCACCCAAGAAGACCTTAAATTCACAATCTTCTTCCTTAAGCCGGCCT 60
||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 1 ATGGCTTCAAGTCCACCAAAGAAGACCTTAAATTCACAATCTTCCCCCTTAAGCCGGCCT 60
Query 61 CCACAAGCTGTCAAGTTTGGTCGCCGGACGTCCAGTGGTCGCATTGTTAGCCTCTCCCGT 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CCACAAGCTGTCAAGTTTGGTCGCCGGACGTCCAGTGGTCGCATTGTTAGCCTCTCCCGT 120
Query 121 GACGATGACATGGACGTCTCTGGTGATTACTCCGGCCAAAATGATTACATCAACTACACC 180
||||||||||||||||||||||| ||||||||| ||||||||||||||||||| ||||||
Sbjct 121 GACGATGACATGGACGTCTCTGGCGATTACTCCAGCCAAAATGATTACATCAATTACACC 180
Query 181 GTCCTCATGCCTCCAACACCTGACAACCAACCTGCTGGCTCCTCTGGCTCCACCTCGGAG 240
|||||||||||||||||||| ||||||||||||||||||||||| || ||||||||||||
Sbjct 181 GTCCTCATGCCTCCAACACCAGACAACCAACCTGCTGGCTCCTCCGGGTCCACCTCGGAG 240
Query 241 TCTAAAGGTGATGCTAACCGAGGTGGAGGAGGAGGAGACGGGCCCAAGATGGGGAATAAG 300
|| ||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 241 TCGAAAGGTGATGCAAACCGAGGTGGAGGAGGAGGAGACGGGCCTAAGATGGGGAATAAG 300
Query 301 CTGGAGAGGAGATTGTCTGTCATGAAATCAAATAACAAATCAATGTTGTTGAGGAGCCAG 360
|||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 301 CTGGAGAGGAGATTATCTGTCATGAAATCGAATAACAAATCAATGTTGTTGAGGAGCCAG 360
Query 361 ACGGGAGATTTTGATCATAACAGGTGGTTGTTTGAATCTAAAGGAAAATACGGTATTGGA 420
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 361 ACGGGAGATTTTGATCATAACAGGTGGTTGTTTGAGTCTAAAGGAAAATACGGTATTGGA 420
Query 421 AACGCGTTTTGGTCAGAAGAGGATGATACCTATGATGGTGGCGTTAGCAAGTCCGATTTC 480
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 421 AACGCGTTTTGGTCAGAAGAGGATGATACGTATGATGGTGGCGTTAGCAAGTCCGATTTC 480
Query 481 TTAGACAAGCCATGGAAACCTCTCACGAGGAAAGTTCAGATCCCGGCCAAAATTCTTAGT 540
|||||||||||||||||||||||||||||||||||| || ||||||||||| ||||||||
Sbjct 481 TTAGACAAGCCATGGAAACCTCTCACGAGGAAAGTTAAGGTCCCGGCCAAAGTTCTTAGT 540
Query 541 CCCTACAGGTTATTAATCGTGATTCGTCTTGTGATAGTCTTCTTCTTCCTTTGGTGGCGT 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 CCCTACAGGTTATTAATCGTGATTCGTCTTGTGATAGTCTTCTTCTTCCTTTGGTGGCGT 600
Query 601 ATTACGAACCCTAATGAGGATGCAATGTGGTTATGGGGACTATCGATAGTCTGCGAGATT 660
||||||| ||||||||||||||||||||| |||||||||| ||||||||||||||||||
Sbjct 601 GTTACGAATCCTAATGAGGATGCAATGTGGCTATGGGGACTGTCGATAGTCTGCGAGATT 660
Query 661 TGGTTCGCTTTCTCTTGGATTCTTGACATTCTTCCGAAGCTAAACCCTATAAATAGAGCT 720
||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 661 TGGTTTGCTTTCTCTTGGATTCTTGACATTCTTCCGAAGCTAAACCCTATAAACCGAGCC 720
Query 721 ACTGACCTTGCTGCCTTGCATGACAAGTTTGAGCAGCCCTCTCCGTCAAATCCCACTGGT 780
|| |||||||||| |||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 721 ACGGACCTTGCTGTCTTGCATGACAAATTTGAGCAGCCCTCTCCGTCAAATCCCACTGGT 780
Query 781 CGCTCTGATCTTCCCGGTGTTGATGTGTTCGTTTCCACGGCTGACCCTGAGAAGGAACCG 840
||||||||||||||||||||||||||||| ||||||||||||||||| || || ||||||
Sbjct 781 CGCTCTGATCTTCCCGGTGTTGATGTGTTTGTTTCCACGGCTGACCCAGAAAAAGAACCG 840
Query 841 CCTTTAGTCACTGCAAACACCCTTCTCTCGATCCTTGCTGTGGATTATCCAATTGAGAAG 900
||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 841 CCTTTAGTCACTGCAAATACCCTTCTCTCGATCCTTGCCGTGGATTATCCAATTGAGAAG 900
Query 901 CTTTCTGCTTACATTTCTGACGATGGTGGTGCAATTCTCACCTTTGAAGCTATGGCTGAA 960
|||||||| |||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 901 CTTTCTGCCTACATTTCAGACGATGGTGGTGCAATTCTCACCTTTGAAGCCATGGCTGAA 960
Query 961 GCTGTTCGTTTTGCTGAGTATTGGGTGCCATTTTGCAGAAAACATGATATAGAGCCACGG 1020
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 961 GCTGTTCGTTTTGCTGAGTATTGGGTGCCATTTTGCAGAAAACATGATATAGAGCCACGG 1020
Query 1021 AACCCGGATAGTTACTTTAGCATTAAAAAGGACCCAACAAAAAACAAGAAAAGGCAAGAT 1080
||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||
Sbjct 1021 AACCCGGATAGTTACTTTAACATTAAAAAGGACCCTACAAAAAACAAGAAAAGGCAAGAT 1080
Query 1081 TTCGTCAAAGATCGTCGTTGGATCAAGCGTGAGTATGACGAATTCAAGGTCAGGATCAAT 1140
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1081 TTTGTCAAAGATCGTCGTTGGATCAAGCGTGAGTATGACGAATTCAAGGTCAGGATCAAT 1140
Query 1141 GGTCTTCCAGAACAAATCAAGAAAAGAGCTGAACAGTTCAACATGAGAGAAGAGCTCAAG 1200
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1141 GGTCTTCCAGAACAAATCAAGAAAAGAGCTGAACAATTCAACATGAGAGAAGAGCTCAAG 1200
Query 1201 GAGAAGCGAATTGCCCGAGAGAAAAATGGGGGTGTATTGCCGCCAGATGGGGTTGAGGTG 1260
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1201 GAGAAGCGAATTGCCCGAGAGAAAAATGGGGGCGTATTGCCGCCAGATGGGGTTGAGGTG 1260
Query 1261 GTAAAAGCAACGTGGATGGCTGATGGTACGCATTGGCCAGGGACATGGTTTGAACCTAAA 1320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1261 GTAAAAGCAACGTGGATGGCTGATGGTACGCATTGGCCAGGGACATGGTTTGAACCTAAA 1320
Query 1321 CCTGATCATTCAAAAGGAGATCACGCCGGAATTCTACAGATCATGAGCAAAGTGCCTGAT 1380
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1321 CCTGATCATTCAAAAGGGGATCACGCCGGAATTCTACAGATCATGAGCAAAGTGCCTGAG 1380
Query 1381 CTTGAACCGGTGATGGGCGGACCGAATGAAGGCGCGCTAGATTTCACAGGGATTGATATT 1440
||||||||||| ||||| ||||||||||||||||| || ||||||||||| |||||||||
Sbjct 1381 CTTGAACCGGTTATGGGTGGACCGAATGAAGGCGCTCTGGATTTCACAGGAATTGATATT 1440
Query 1441 CGTGTACCTATGTTTGCTTATGTCTCGCGTGAGAAACGTCCAGGTTTTGACCACAACAAG 1500
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1441 CGCGTACCTATGTTTGCTTATGTCTCGCGTGAGAAACGTCCAGGTTTTGACCACAACAAG 1500
Query 1501 AAAGCCGGCGCTATGAATGGTATGGTTAGAGCTTCAGCCATATTATCCAATGGCGCGTTT 1560
|||||||| || |||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1501 AAAGCCGGTGCCATGAATGGTATGGTTAGAGCTTCAGCCATACTATCCAATGGCGCGTTC 1560
Query 1561 ATCCTCAATCTGGACTGTGATCACTACATCTACAACTCCAAAGCTATCAAAGAAGGAATG 1620
||||| ||||| ||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 1561 ATCCTGAATCTAGACTGTGATCACTACATCTACAATTCCAAAGCTATCAAGGAAGGAATG 1620
Query 1621 TGTTTCATGATGGACCGAGGTGGTGACAGGATCTGTTATATTCAGTTTCCACAACGGTTC 1680
|||||||||||||||||||| ||||||||||||||||| ||||| ||||||||||| |||
Sbjct 1621 TGTTTCATGATGGACCGAGGCGGTGACAGGATCTGTTACATTCAATTTCCACAACGATTC 1680
Query 1681 GAAGGAATCGACCCATCAGATCGATATGCAAATCACAATACTGTCTTCTTCGATGGTAAC 1740
||||||||||||||||| ||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 1681 GAAGGAATCGACCCATCTGATCGATATGCAAATCACAATACCGTCTTCTTCGACGGTAAC 1740
Query 1741 ATGAGAGCATTAGATGGGTTACAAGGTCCTGTCTATGTTGGAACAGGGTGTATGTTCCGA 1800
|||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1741 ATGAGAGCGCTAGATGGGTTACAAGGTCCTGTCTATGTCGGAACAGGGTGTATGTTCCGA 1800
Query 1801 AGGTATGCTCTCTATGGATTCAACCCACCTCGAGCCAATGAGTACTCAGGCGTGTTTGGT 1860
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1801 AGGTATGCTCTCTATGGATTCAACCCACCTCGAGCCAATGAGTACTCAGGCGTGTTCGGT 1860
Query 1861 CAGGAAAAGGCTCCAGCTATGCATGTCCGGACTCAGTCCCAAGCATCCCAAACGTCCCAA 1920
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1861 CAGGAAAAGGCTCCAGCCATGCATGTCCGGACTCAGTCCCAAGCATCCCAAACGTCCCAA 1920
Query 1921 GCGTCTGATTTAGAGTCTGATACACAGCCTCTTAATGATGATCCAGATCTTGGTCTGCCC 1980
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1921 GCGTCTGATTTAGAGTCTGATACACAGCCTCTTAATGATGATCCAGATCTTGGTTTGCCT 1980
Query 1981 AAAAAGTTTGGTAATTCGACCATGTTCACAGACACTATTCCAGTTGCAGAGTACCAAGGA 2040
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1981 AAAAAGTTTGGTAATTCGACCATGTTCACAGACACTATTCCGGTTGCAGAGTACCAAGGA 2040
Query 2041 CGGCCTCTAGCAGATCACATGTCGGTTAAAAACGGAAGACCACCTGGTGCTTTGCTCCTG 2100
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 2041 CGGCCTCTAGCAGATCACATGTCGGTTAAAAACGGAAGACCACCCGGTGCTTTGCTCCTG 2100
Query 2101 CCACGACCTCCCCTTGATGCTCCAACAGTGGCTGAAGCCATCGCTGTCATTTCTTGCTGG 2160
||||| ||||||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 2101 CCACGGCCTCCCCTTGACGCTCCAACAGTGGCTGAAGCCATAGCTGTCATTTCTTGCTGG 2160
Query 2161 TATGAAGACAATACTGAATGGGGAGATAGAATCGGATGGATTTACGGGTCGGTCACGGAA 2220
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 2161 TATGAAGACAATACCGAATGGGGAGATAGAATCGGATGGATTTACGGGTCGGTCACTGAA 2220
Query 2221 GACGTGGTGACAGGTTATCGTATGCATAACCGTGGTTGGCGGTCCGTTTACTGCATCACA 2280
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 2221 GACGTGGTGACAGGTTATCGTATGCATAACCGTGGTTGGCGGTCCATTTACTGCATCACA 2280
Query 2281 AAACGTGATGCTTTCCGTGGCACAGCTCCAATCAATCTCACTGACCGTCTCCATCAAGTT 2340
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2281 AAACGCGATGCTTTCCGTGGCACAGCTCCAATCAATCTCACTGACCGTCTCCATCAAGTT 2340
Query 2341 CTCCGTTGGGCCACAGGCTCTGTAGAAATCTTTTTCTCCAAGAACAATGCCATGTTCGCC 2400
|||||||||||||||||||||||||||||||| ||||| |||||||| |||||||||||
Sbjct 2341 CTCCGTTGGGCCACAGGCTCTGTAGAAATCTTCTTCTCTAAGAACAACGCCATGTTCGCG 2400
Query 2401 ACCAGAAGGCTCAAGTTTCTCCAGCGAGTCGCCTACCTCAATGTCGGGATCTACCCTTTC 2460
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 2401 ACCAGAAGGCTCAAGTTTCTCCAGCGAGTCGCCTACCTCAACGTCGGGATCTACCCTTTT 2460
Query 2461 ACTTCCATCTTCTTGGTCGTCTATTGCTTCCTCCCTGCTCTCTGTCTCTTCAGCGGAAAA 2520
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2461 ACCTCCATCTTCTTGGTCGTCTATTGCTTCCTCCCTGCTCTCTGTCTCTTCAGCGGAAAA 2520
Query 2521 TTCATCGTCCAGAGCCTCGATATCCACTTCCTCTCCTACCTTCTCTGCATCACCGTAACC 2580
|||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 2521 TTCATCGTACAGAGCCTCGATATCCACTTTCTCTCCTACCTTCTCTGCATCACCGTAACC 2580
Query 2581 CTAACCCTAATCTCACTCCTCGAGGTCAAATGGTCGGGAATCGGACTGGAAGAATGGTGG 2640
|||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 2581 CTAACCTTAATCTCACTCCTGGAGGTCAAATGGTCGGGAATCGGACTGGAAGAATGGTGG 2640
Query 2641 AGAAATGAACAGTTTTGGTTAATCGGAGGCACAAGCGCTCATCTTGCAGCAGTCGTTCAA 2700
||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 2641 AGAAATGAACAGTTTTGGTTAATAGGAGGCACAAGCGCTCATCTCGCAGCAGTCGTTCAA 2700
Query 2701 GGTTTGCTCAAAGTTATAGCCGGAATCGAAATCTCCTTCACCCTGACATCGAAAGCCTCA 2760
|||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 2701 GGTTTGCTCAAAGTAATAGCCGGAATCGAAATCTCCTTCACCCTGACATCGAAATCCTCA 2760
Query 2761 GGAGAAGACGAAGACGACATCTTTGCGGATCTTTACATTGTGAAATGGACAGGCTTATTC 2820
|||||||||||||| |||||||| || ||||||||||| || |||||||| |||||||||
Sbjct 2761 GGAGAAGACGAAGATGACATCTTCGCTGATCTTTACATAGTAAAATGGACGGGCTTATTC 2820
Query 2821 ATCATGCCGCTTACAATCATCATAGTCAACCTTGTTGCGATAGTGATTGGAGCTTCGAGA 2880
|||||||||||||||||||| |||| ||||||||||||||||||||||||||||| ||
Sbjct 2821 ATCATGCCGCTTACAATCATTGTAGTGAACCTTGTTGCGATAGTGATTGGAGCTTCCAGG 2880
Query 2881 ACAATATACAGTGTGATTCCGCAATGGGGCAAGTTAATGGGAGGAATATTCTTTAGTTTA 2940
|||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct 2881 ACAATATACAGTGTGATTCCGCAATGGGGCAAGTTACTAGGAGGAATATTCTTTAGTTTA 2940
Query 2941 TGGGTCTTGACTCATATGTATCCGTTTGCTAAAGGATTGATGGGTCGAAGAGGAAAGGTT 3000
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2941 TGGGTCTTGACTCATATGTATCCGTTTGCTAAAGGATTGATGGGTCGAAGAGGAAAGGTT 3000
Query 3001 CCAACGATTGTTTATGTTTGGTCCGGGCTTGTGTCGATTACCGTCTCGCTGCTTTGGATC 3060
||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 3001 CCAACAATTGTTTATGTTTGGTCCGGGCTTGTGTCGATTACCGTGTCGCTGCTTTGGATC 3060
Query 3061 ACCATTAGTCCTCCAGATGATGTTTCAGGCAGTGGAGGAATCTCAGTGTAAATTTGGATC 3120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3061 ACCATTAGTCCTCCAGATGATGTTTCAGGCAGTGGAGGAATCTCAGTGTAAATTTGGATC 3120
Query 3121 AGAATGTAAAAACTGAG-G-ATTTTTAACTCTAtttttttttGTTTGTAAAAGTAATTTT 3178
||||||||||||||||| | |||||| |||| ||||||||| |||||||||||||||||
Sbjct 3121 AGAATGTAAAAACTGAGTGGATTTTT--CTCTTTTTTTTTTTTTTTGTAAAAGTAATTTT 3178
Query 3179 GGTTTATGTAAATTTATGTTGAAACAGACCAATTCTTGCTGTACTTCGTGTTAGCTTTTG 3238
|||||||||||||||||||||||||||||||||| ||||| | |||||||||||||||||
Sbjct 3179 GGTTTATGTAAATTTATGTTGAAACAGACCAATTATTGCTTTCCTTCGTGTTAGCTTTTG 3238
Query 3239 ATACACACCGTTGTTACATGGAACAGAAACAAACAGttttttt 3281
| || |||||||||||||||||| ||||||||||||||||||
Sbjct 3239 AGACTTACCGTTGTTACATGGAACTGAAACAAACAGTTTTTTT 3281
> Ahg477551 jgi|Araly1|477551|fgenesh2_kg.3__252__AT3G03050.1
Length=4124
Score = 514 bits (278), Expect = 2e-144
Identities = 820/1079 (76%), Gaps = 48/1079 (4%)
Strand=Plus/Plus
Query 2017 ATTCCAGTTGCAGAGTACCAAGGACGGCCTCTAGCAGATCA--CATGTCGGTTAAAAACG 2074
||||| ||||| |||| |||||| || ||||| || ||||| || | | || ||||||
Sbjct 2817 ATTCCGGTTGCCGAGTTCCAAGGTCGTCCTCTTGCGGATCACCCA-G-CTGTGCAAAACG 2874
Query 2075 GAAGACCACCTGGTGCTTTGCTCC--TGC-CACGACCTCCCCTTGATGC-TCCAACAGTG 2130
|| ||||||| || ||| | | || | | | ||| || || ||||| | |||| |||
Sbjct 2875 GACGACCACCCGGAGCTCT-CACCATTCCTCGCGAGCT--TCTCGATGCAT-CAACTGTG 2930
Query 2131 GCTGAAGCCATCGCTGTCATTTCTTGCTGGTATGAAGACAATACTGAATGGGGAGATAGA 2190
|| |||||||| || ||||| ||||| ||||| || || || ||||| |||||| | |
Sbjct 2931 GCAGAAGCCATAGCCGTCATCTCTTGTTGGTACGAGGATAAAACTGAGTGGGGATCTCGG 2990
Query 2191 ATCGGATGGATTTACGGGTCGGTCACGGAAGACGTGGTGACAGGTTATCGTATGCATAAC 2250
||||| |||||||| || || ||||||||||| ||||| ||||||||| | |||||||||
Sbjct 2991 ATCGGTTGGATTTATGGATCTGTCACGGAAGATGTGGTCACAGGTTATAGAATGCATAAC 3050
Query 2251 CGTGGTTGGCGGTCCGTTTACTGCATCA-CAAAACGTGATGCTTTCCGTGGCACAGCTCC 2309
|| || ||| || |||||||| | | ||||| | |||||||||||||||||||||||
Sbjct 3051 CGAGGCTGGAAATCGGTTTACTGTGTGACCAAAA-GGGATGCTTTCCGTGGCACAGCTCC 3109
Query 2310 AATCAATCTC-ACTGACCGTCTCCATCAAGTTCTCCGTTGGGCCACAGGCTCTGTAGAAA 2368
|||||| || || || | || || || |||||||| ||||| || ||||| ||||| |
Sbjct 3110 AATCAA-CTTGACGGATAGGCTTCACCAGGTTCTCCGATGGGCTACTGGCTCGGTAGAGA 3168
Query 2369 TCTTTTTCTCCAAGAACAATGCCATGTTCGCCA-CCAGAAGGCTCAAGTTTCTCCAGCGA 2427
|||| ||||| || ||||||||| | || || | || || | | || | |||||| ||
Sbjct 3169 TCTTCTTCTCAAAAAACAATGCCTTCTTTGCTAGCCCGA-GAATGAAAATCCTCCAGAGA 3227
Query 2428 GTCGCCTACCTCAATGTCGGGATCTACCCTTTCACTTCCAT-CTTCTTGGTCGTCTATTG 2486
|||| ||||| || ||||| |||||||| ||||| || || |||| | | || || ||
Sbjct 3228 ATCGCTTACCTAAACGTCGGAATCTACCCATTCACATC-ATTCTTCCTCATAGTGTACTG 3286
Query 2487 CTTCCTCCCTGCTCTCTGTCTCTTCAGC-GGAAAATTCATCGTCCAGAGC-CTCGATATC 2544
||||||||| ||||||| || ||| | || ||||||| ||||| | | ||| || ||
Sbjct 3287 CTTCCTCCCCGCTCTCTCCCTATTCT-CAGGCCAATTCATAGTCCAAA-CACTCAATGTC 3344
Query 2545 -CACTTCCTC-TCCTACCTTCTC--TGCATCACCGTAACCCTAACCCTAATCTCACTCCT 2600
|| ||||| || ||||| || | |||| || | || || | || || | |||||
Sbjct 3345 ACA-TTCCTTGTC-TACCT-CTTAAT-CATCTCCATTACACTCTGCTTACTCGCTCTCCT 3400
Query 2601 CGAGGTCAAATGGTCGGGAATCGGACTGGAAGAATGGTGGAGAAATGAACAGTTTTGGTT 2660
|||| |||||||||| |||||| ||| || ||||||||| |||| || ||||| ||| |
Sbjct 3401 CGAGATCAAATGGTCAGGAATCTCACTCGAGGAATGGTGGCGAAACGAGCAGTTCTGGCT 3460
Query 2661 AATCGGAGGCACAAGCGCTCATCTT-GCAGCAGTCGTTCAAGGTTTGCTCAAAGTTATAG 2719
|| ||||| ||||||||||| ||| || || || | ||||| ||||||||||| | |
Sbjct 3461 CATTGGAGGAACAAGCGCTCA-CTTAGCCGCGGTTATCCAAGGGCTGCTCAAAGTTGTTG 3519
Query 2720 CCGGAATCGAAATCTCCTTCACCCTGACATCGAAAGCCTCAGGAGAAGACGAAGACGAC- 2778
|||||||||||||||| ||||| ||||||| ||| || |||||| || | ||| |||
Sbjct 3520 CCGGAATCGAAATCTCATTCACATTGACATCTAAATCCGGAGGAGAGGATGTAGATGACG 3579
Query 2779 ATCTTTGCGGATCTTTACATTGTGAAATGGACAGGCTT-ATTCATCATGCCGCTTACAAT 2837
| ||||||||||| |||||||||||||||||| | | || ||| || | |||||
Sbjct 3580 AA-TTTGCGGATCTGTACATTGTGAAATGGACATCCCTCATG-ATCCCACCAATCACAAT 3637
Query 2838 CATCATAGTCAACCTTGTTGCGATAGTGATTGGAGCTTCG-AGAACAATATACAGTGTGA 2896
||| || || || || | ||||| | | | || | || | || || |||||||||||||
Sbjct 3638 CATGATGGTGAATCTCATCGCGATCGCGGTCGG-GTTTAGCAGGACGATATACAGTGTGA 3696
Query 2897 TTCCGCAATGGGGCAAGTTAATGGGAGGAATATTCTTTAGTTTATGGGT-CTTGACTCAT 2955
||||||| ||| | ||||| || |||||| | ||||| ||||| ||||| || | |||||
Sbjct 3697 TTCCGCAGTGGAGTAAGTTGATTGGAGGAGTGTTCTTCAGTTTCTGGGTACTGG-CTCAT 3755
Query 2956 ATGTATCCGTTTGCTAAAGGA-TTGATGGGTCGAAGAGGAAAGGT-TCCAACGATTGTTT 3013
| ||||| || |||||||| || ||||| ||||||||| || ||| || ||||| |
Sbjct 3756 CTTTATCCATTCGCTAAAGGGCTT-ATGGGAAGAAGAGGAA-GGACTCCGACTATTGTAT 3813
Query 3014 ATGTTTGGTCCGGGCTTGT-GTCGATTACCGTCTCGCTGCTTTGGATCACCATTAGTCC 3071
|||||||||| || ||||| | | || ||| | || ||||||||| | |||||| |||
Sbjct 3814 ATGTTTGGTCTGGACTTGTTGCC-ATCACCATTTCTCTGCTTTGGGTTGCCATTAATCC 3871
> Ahg918929 jgi|Araly1|918929|scaffold_100210.1
Length=3674
Score = 340 bits (184), Expect = 3e-92
Identities = 727/981 (74%), Gaps = 69/981 (7%)
Strand=Plus/Plus
Query 2113 CTTGATGC-TCCAACAGTGGCTGAAGCCATC-GCTGTCATTTCTTGCTGGTATGAAGACA 2170
|||||||| || || || || ||||| ||| | ||| || ||||||| ||||| ||||
Sbjct 2571 CTTGATGCAGCC-ACTGTAGCCGAAGCAATCAG-TGTGATATCTTGCTTCTATGAGGACA 2628
Query 2171 ATACTGAATGGGG-AGATAGAATCGGATGGATTTACGGGTCGGTCACGGAAGACGTGGTG 2229
| ||||| ||||| | | ||| | |||||||| || || || || || ||||| || ||
Sbjct 2629 AAACTGAGTGGGGTA-AAAGAGTTGGATGGATCTATGGATCAGTGACTGAAGATGTAGTC 2687
Query 2230 ACAGGTTATCGTATGCATAACCGTGGTTGGCGGTCCGTTTACTGCATCACAAAACGTGAT 2289
|| || ||||| ||||| ||| | || ||| | || | || ||| | ||||| || ||
Sbjct 2688 ACGGGATATCGAATGCACAACAGAGGATGGAGATCAATCTATTGCGTGACAAAGCGGGAC 2747
Query 2290 GCTTTCCGTGGCACAGCTCCAATCAATCTCACTGACCGTCTCCATCAAGTTCTCCGTTGG 2349
||||||||||| ||||||||||||||||| || || | || || || ||||| | |||
Sbjct 2748 GCTTTCCGTGGAACAGCTCCAATCAATCTAACGGATAGGCTTCACCAGGTTCTGAGATGG 2807
Query 2350 GCCACAGGCTCTGTAGAAATCTTTTTCTCCAAGAACAATGCCATGTTCGCCACCAGAAGG 2409
|| ||||| ||||| || ||||||||||| | ||||||||| || ||||| |||||||||
Sbjct 2808 GCAACAGGATCTGTTGAGATCTTTTTCTCTAGGAACAATGCGATCTTCGCAACCAGAAGG 2867
Query 2410 CTCAAGTTTCTCCAGCGAGTCGCCTACCTCAATGTCGGGATCTACCCTTTCACTTC-CAT 2468
| |||||| | ||| |||| || ||| ||||||| || || || || ||||| || | |
Sbjct 2868 ATGAAGTTTTTGCAGAGAGTGGCTTACTTCAATGTTGGAATGTATCCATTCACATCGC-T 2926
Query 2469 CTTCTTGGTCGTCTATTGC-TTCCTCCCTGC--TCTCTGTCTCTTCAGC-GGAAAATTCA 2524
||| | ||||||| ||| || |||||||| | || | |||||| | || ||||||
Sbjct 2927 TTTCCTCATCGTCTACTGCATT-CTCCCTGCGGTTTC-G-CTCTTC-TCGGGTCAATTCA 2982
Query 2525 TCGTCCAGAGC-CTCG-ATATCCAC-TTCCT-CTCCTACCTTCTCTGC-ATCAC-CGTAA 2578
| ||||| | | || | |||| || ||| | | ||| || |||| | || || | | |
Sbjct 2983 TAGTCCA-ATCACT-GAATAT-AACGTTCTTGAT-CTATCTCCTCT-CGATAACAC-TCA 3036
Query 2579 CCCTAACCCTA--ATCTCACTCCTCGAGGTCAAATGGTCGGGAATCGGACTGGAAGAATG 2636
| || | || | |||||||| ||| |||||||||| || || || | |||||
Sbjct 3037 CACT--CTGTATGTTATCACTCCTTGAGATCAAATGGTCAGGCATAACTCTCCATGAATG 3094
Query 2637 GTGGAGAAATGAACAGTTTTGGTTAATCGGAGGCACAAGCGCTCATCTTGCAGCAG-TCG 2695
|||||||||||| ||||| ||| |||| ||||| |||||||| || | |||||| | ||
Sbjct 3095 GTGGAGAAATGAGCAGTTCTGGGTAATTGGAGGTACAAGCGCACACCCTGCAGCTGTTC- 3153
Query 2696 TTCAAGGT-TTGCTCAAAGTTATAGCCGGAATCGAAATCTCCTTCACCCTGACATCGAAA 2754
|||||||| || ||||| || || || ||| |||| ||||| || ||| |||| || ||
Sbjct 3154 TTCAAGGTCTT-CTCAAGGTAATTGCAGGAGTCGATATCTCGTTTACCTTGACTTC-CAA 3211
Query 2755 G-C--CT-CAGGAGAAGACGAAGACGA-CATCTTTGCGGATCTTTACATTGTGAAATGGA 2809
| | || || |||||| | ||| || | ||||| ||||| || ||||||||||
Sbjct 3212 GTCATCTACACCAGAAGAAGGAGAGGATGA-GTTTGCTGATCTGTATGCTGTGAAATGG- 3269
Query 2810 CAGGCTTATTCATCATGCC-GC-TT-ACAATCATCATAGTCAACCT-TG-TTGCGATAGT 2864
| |||| || || | || | || || ||||| || || || | || ||||||| |
Sbjct 3270 -A-GCTTTTTGATGGTTCCTCCATTGACGATCATGATGGTGAA--TATGATTGCGATTGC 3325
Query 2865 GATTGGAGCTT-CGAGAACAATATACAGTGTGATTCCGCAATGGGGCAAG-TTAATGGGA 2922
| ||| |||| |||| || | |||||| | ||||||||||| | ||| || | |||
Sbjct 3326 G-GTGGGGCTTGCGAGGACTCTGTACAGTCCGTTTCCGCAATGGAGTAAGCTT-GTTGGA 3383
Query 2923 GGAATATTCTTTAG-TTTATGGGT-C-TTGACTCATATGTATCCGTTTGCTAAAGGATTG 2979
||| | ||||| || ||| ||||| | ||| |||| |||||||||||||||||||||||
Sbjct 3384 GGAGTGTTCTTCAGCTTT-TGGGTGCTTTG--TCATCTGTATCCGTTTGCTAAAGGATTG 3440
Query 2980 ATGGGTCGAAGAGGAA-AGGTTCCAACGATTGT-TTATGTTTGGTCCGGGCTTGT-GTCG 3036
||||| ||||||| | || |||| ||||| || || ||| ||||| || |||| ||||
Sbjct 3441 ATGGGAAGAAGAGGCAGAG-TTCCGACGATAGTGTT-TGTGTGGTCAGGT-TTGTTGTCG 3497
Query 3037 ATTACCGTCTCGCTGCTTTGG 3057
|||| || || ||||||||
Sbjct 3498 ATTATTGTGTCTTTGCTTTGG 3518
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 124029630407
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5