BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G33120.2
Length=1222
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482248 jgi|Araly1|482248|fgenesh2_kg.4__1308__AT2G33120.2 1098 0.0
Ahg919162 jgi|Araly1|919162|scaffold_100443.1 737 0.0
Ahg482195 jgi|Araly1|482195|fgenesh2_kg.4__1255__AT2G32670.1 636 0.0
> Ahg482248 jgi|Araly1|482248|fgenesh2_kg.4__1308__AT2G33120.2
Length=1513
Score = 1098 bits (594), Expect = 0.0
Identities = 663/696 (95%), Gaps = 6/696 (1%)
Strand=Plus/Plus
Query 207 ATGGCGCAACAATCGTTGATCTACAGTTTCGTCGCTCGTGGTACCGTTATCCTCGTTGAG 266
||||||||||||||||||||||||||||||||||||||||||||||| ||||| || |||
Sbjct 613 ATGGCGCAACAATCGTTGATCTACAGTTTCGTCGCTCGTGGTACCGTAATCCTTGTCGAG 672
Query 267 TTCACAGATTTCAAAGGCAATTTCACATCAATCGCTGCTCAGTGCCTTCAGAAGCTTCCT 326
||||| ||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 673 TTCACTGATTTCAAAGGCAATTTCACATCTATCGCTGCTCAGTGCCTCCAGAAGCTTCCT 732
Query 327 TCTTCTAACAACAAGTTTACCTACAACTGCGATGGTCACACGTTCAATTACCTCGTCGAA 386
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 733 TCTTCTAACAACAAGTTTACCTACAACTGCGATGGTCATACGTTCAATTACCTCGTCGAA 792
Query 387 AATGGATTCAGTGAGTCAAAATATTGCTCG----AT-CT-CCTATTGTGTTGTTGCAGTT 440
|||||||||||||||||||||||||||||| || || ||||||||||||||||||||
Sbjct 793 AATGGATTCAGTGAGTCAAAATATTGCTCGATCTATGCTCCCTATTGTGTTGTTGCAGTT 852
Query 441 GATTCTGCTGGGAGGCAGATTCCTATGGCTTTCTTGGAACGAGTTAAGGAGGATTTCAAC 500
|||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 853 GATTCTGCTGGGAGACAGATTCCTATGGCTTTCTTGGAACGAGTGAAGGAGGATTTTAAC 912
Query 501 AAGAGATATGGTGGTGGAAAGGCTGCAACTGCTCAAGCAAACAGCTTGAATAAAGAATTT 560
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 913 AAGAGATATGGTGGTGGAAAGGCTGCAACTGCTCAAGCCAACAGCTTGAATAAAGAATTT 972
Query 561 GGGTCGAAACTGAAAGAGCATATGCAGTATTGCATGGATCATCCTGATGAGATTAGCAAG 620
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 973 GGGTCGAAACTGAAAGAGCATATGCAGTATTGCATGGATCATCCTGATGAGATTAGCAAG 1032
Query 621 CTTGCTAAGGTTAAAGCTCAAGTGTCTGAAGTTAAAGGTGTTATGATGGAAAACATTGAG 680
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1033 CTTGCTAAGGTGAAGGCTCAAGTGTCTGAAGTTAAAGGTGTTATGATGGAAAACATTGAG 1092
Query 681 AAGGTTCTTGACCGTGGTGAGAAGATTGAGCTTTTGGTTGACAAAACAGAAAACCTTCGC 740
||||||||||| ||||||||||| ||||||||| |||| |||||||| |||||||||||
Sbjct 1093 AAGGTTCTTGATCGTGGTGAGAAAATTGAGCTTCTGGTGGACAAAACCGAAAACCTTCGT 1152
Query 741 TCACAGGCGCAAGATTTTAGAACACAAGGAACTCAAATGAGAAGAAAGATGTGGTTTCAG 800
||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 1153 TCACAGGCGCAAGATTTCAGAACACAAGGAACTCAAATGAGAAGGAAGATGTGGTTTCAG 1212
Query 801 AACATGAAGATAAAGCTCATTGTCCTTGCAATTATCATTGCCTTGATTCTCATCATCATC 860
|||||||||||||| || ||||| |||||||| |||||||||||||||||||||||||||
Sbjct 1213 AACATGAAGATAAAACTGATTGTTCTTGCAATCATCATTGCCTTGATTCTCATCATCATC 1272
Query 861 CTCTCAATTTGTGGGGGATTCAACTGCGGTAAATAA 896
||||| |||||||||||||||||||||||||||||
Sbjct 1273 CTCTCGGTTTGTGGGGGATTCAACTGCGGTAAATAA 1308
Score = 431 bits (233), Expect = 6e-120
Identities = 256/267 (96%), Gaps = 2/267 (1%)
Strand=Plus/Plus
Query 741 TCACAGGCGCAAGATTTTAGAACACAAGGAACTCAAATGAGAAGAAAGATGTGGTTTC-A 799
||||||||||||||||| |||||||||||||||||||||||||| ||||||||| ||| |
Sbjct 347 TCACAGGCGCAAGATTTCAGAACACAAGGAACTCAAATGAGAAGGAAGATGTGG-TTCAA 405
Query 800 GAACATGAAGATAAAGCTCATTGTCCTTGCAATTATCATTGCCTTGATTCTCATCATCAT 859
||||||||||||||| ||||||||| ||||||| ||||||||||||||||||||||||||
Sbjct 406 GAACATGAAGATAAAACTCATTGTCGTTGCAATCATCATTGCCTTGATTCTCATCATCAT 465
Query 860 CCTCTCAATTTGTGGGGGATTCAACTGCGGTAAATAAGTCTGGAACATTTCTTCCCGGCG 919
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 466 CCTCTCGGTTTGTGGGGGATTCAACTGCGGTAAATAAGTCTGGAACATTTCTTCCCGGCG 525
Query 920 TTATCGACTGCGCTCTGTGCTTCCCAAGATCTCTGAGAATATCTTCATTCAGTTCGTTGT 979
|| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 526 TTGTGGACTGCGCTCTGTGCTTCCCAAGATCTCTGAGAATATCTTCATTCAGTTCGTTGT 585
Query 980 GCTACCtttttgttttgtttttgtttt 1006
|||||||||||||||||||||||||||
Sbjct 586 GCTACCTTTTTGTTTTGTTTTTGTTTT 612
Score = 226 bits (122), Expect = 3e-58
Identities = 153/168 (91%), Gaps = 2/168 (1%)
Strand=Plus/Plus
Query 1005 tttgtGATTTCTATATTCTCATACTATATGTTTCTTCTTAGATTGTACTTCTTGAAATTT 1064
|||||| |||||| |||||||| | |||| |||||||||||||||||||||| |||||
Sbjct 1309 TTTGTGGTTTCTAAATTCTCATGC--TATGCTTCTTCTTAGATTGTACTTCTTAAAATTG 1366
Query 1065 GTTTTGTATAGGCtatatatattatacatatatGTATGCATGTTCGACAATCTGCAATGT 1124
||||||||||||| |||||||||||||||||||||||| ||| |||||||| ||||| |
Sbjct 1367 GTTTTGTATAGGCCATATATATTATACATATATGTATGAATGCTCGACAATTTGCAACAT 1426
Query 1125 TGCTATTGCTGGTACTGACACTAATTCTTGCAAACCAATATTTGGACG 1172
||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1427 TGCTATTGCTGGTACTGACACTAATTCTTGCGAACCAATATTTGGACG 1474
> Ahg919162 jgi|Araly1|919162|scaffold_100443.1
Length=700
Score = 737 bits (399), Expect = 0.0
Identities = 591/679 (87%), Gaps = 32/679 (5%)
Strand=Plus/Plus
Query 198 GTaaa-a-aaaaTGGCGCAACAATCGTTGATCTACAGTTTCGTCGCTCGTGGTACCGTTA 255
||||| | ||||||||||||||||||||||||||||||||||||||||| || || || |
Sbjct 10 GTAAAGAGAAAATGGCGCAACAATCGTTGATCTACAGTTTCGTCGCTCGCGGCACGGTGA 69
Query 256 TCCTCGTTGAGTTCACAGATTTCAAAGGCAATTTCACATCAATCGCTGCTCAGTGCCTTC 315
|||||||||||||||| ||||||||||| |||||||| |||||||||||||||||||| |
Sbjct 70 TCCTCGTTGAGTTCACTGATTTCAAAGGTAATTTCACCTCAATCGCTGCTCAGTGCCTCC 129
Query 316 AGAAGCTTCCTTCTTCTAACAACAAGTTTACCTACAACTGCGATGGTCACACGTTCAATT 375
|||||||||| ||||| ||||||||||| |||||||||||||| ||||| || ||||| |
Sbjct 130 AGAAGCTTCCGTCTTCCAACAACAAGTTCACCTACAACTGCGACGGTCATACCTTCAACT 189
Query 376 ACCTCGTCGAAAATGGATTCAGTGAGTCAAAATATTGCTCGATCTCCTATTGTGTTGTTG 435
|||| |||| || | | || | | | || | |||||||||||||||
Sbjct 190 ACCTTGTCG--AA--G----A-TG-G-------A-T--TC-A---CCTATTGTGTTGTTG 225
Query 436 CAGTTGATTCTGCTGGGAGGCAGATTCCTATGG-CTTTCTTGGAACGAGTTAAGGAGGAT 494
| |||||||||||||||||||| ||||| |||| |||| |||||| |||| || ||||||
Sbjct 226 CGGTTGATTCTGCTGGGAGGCAAATTCCGATGGCCTTT-TTGGAAAGAGTAAAAGAGGAT 284
Query 495 TTCAACAAGAGATATGGTGGTGGAAAGGCTGCAACTGCTCAAGCAAACAGCTTGAATAAA 554
|| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 285 TTTAACAAGAGATATGGTGGTGGAAAAGCTGCAACTGCTCAAGCAAACAGCTTGAATAAG 344
Query 555 GAATTTGGGTCGAAACTGAAAGAGCATATGCAGTATTGCATGGATCATCCTGATGAGATT 614
|| ||||| || |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 345 GAGTTTGGCTCTAAACTGAAAGAGCATATGCAGTATTGCATGGATCATCCAGATGAGATT 404
Query 615 AGCAAGCTTGCTAAGGTTAAAGCTCAAGTGTCTGAAGTTAAAGGTGTTATGATGGAAAAC 674
||||||||||||||||| || || |||||||| |||||||| ||||| ||||||||||||
Sbjct 405 AGCAAGCTTGCTAAGGTGAAGGCGCAAGTGTCAGAAGTTAAGGGTGTAATGATGGAAAAC 464
Query 675 ATTGAGAAGGTTCTTGACCGTGGTGAGAAGATTGAGCTTTTGGTTGACAAAACAGAAAAC 734
|||||||||||||||||||||||||| || |||||||||||||| |||||||| |||||
Sbjct 465 ATTGAGAAGGTTCTTGACCGTGGTGAAAAAATTGAGCTTTTGGTGGACAAAACCGAAAAT 524
Query 735 CTTCGCTCACAGGCGCAAGATTTTAGAACA-CAAGGAACTCAAATGAGAAGAAAGATGTG 793
|||||||||||||| |||||||| |||||| || ||||| || |||||||||||||||||
Sbjct 525 CTTCGCTCACAGGCACAAGATTTCAGAACAACA-GGAACGCAGATGAGAAGAAAGATGTG 583
Query 794 GTTTCAGAACATGAAGATAAAGCTCATTGTCCTTGCAATTATCATTGC-CTTGATTCTCA 852
| ||||||||||||||||||| ||||| || || || || || || || || ||||||||
Sbjct 584 GCTTCAGAACATGAAGATAAAACTCATAGTGCTCGCCATCATTATCGCACT-GATTCTCA 642
Query 853 TCATCATCCTCTCAATTTG 871
||||| | |||||| ||||
Sbjct 643 TCATCGTGCTCTCAGTTTG 661
> Ahg482195 jgi|Araly1|482195|fgenesh2_kg.4__1255__AT2G32670.1
Length=1159
Score = 636 bits (344), Expect = 0.0
Identities = 563/665 (85%), Gaps = 30/665 (5%)
Strand=Plus/Plus
Query 222 TTGATCTACAGTTTCGTCGCTCGTGGTACCGTTATCCTCGTTGAGT-TCACAGATTTCAA 280
||||||||||| ||||||||||||||||| || || |||| |||| | ||||| |||||
Sbjct 207 TTGATCTACAGCTTCGTCGCTCGTGGTACGGTGATTCTCGCCGAGTAT-ACAGAATTCAA 265
Query 281 AGGCAATTTCACATCAATCGCTGCTCAGTGCCTTCAGAAGCTTCCTTCTTCTAACAACAA 340
||| |||||||| || ||||||||||||| || ||||| ||||||||||| || |||||
Sbjct 266 AGGGAATTTCACTTCTGTCGCTGCTCAGTGTCTCCAGAAACTTCCTTCTTCGAATAACAA 325
Query 341 GTTTACCTACAACTGCGATGGTCACACGTTCAATTACCTCGTCGAAAATGGATTCAGTGA 400
|||||| ||||||||||||||||| ||||| ||||||||||||| || | | ||
Sbjct 326 GTTTACATACAACTGCGATGGTCATACGTTTAATTACCTCGTCG--AA---A---A-TG- 375
Query 401 GTCAAAATATTGCTCGATCTCCTATTGTGTTGTTGCAGTTGATTCTGCTGGGAGGCAGAT 460
| | || | | || |||||||||||||| ||||| |||| ||||||||||||
Sbjct 376 G-C------TT--T--A-CT--TATTGTGTTGTTGCTGTTGAATCTGTTGGGAGGCAGAT 421
Query 461 TCCTATGGCTTTCTTGGA-ACGAGTTAAGGAGGATTTCAACAAGAGATATGGTGGTGGAA 519
||| |||||||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct 422 TCCAATGGCTTTCTTGGAGA-GAGTTAAGGAGGATTTCAACAAGAGATATGGTGGTGGAA 480
Query 520 AGGCTGCAACTGCTCAAGCAAACAGCTTGAATAAAGAATTTGGGTCGAAACTGAAAGAGC 579
||||| | ||||||||||| ||||||||||| | ||| |||||||||||| |||| ||||
Sbjct 481 AGGCTACCACTGCTCAAGCCAACAGCTTGAACAGAGAGTTTGGGTCGAAATTGAAGGAGC 540
Query 580 ATATGCAGTATTGCATGGATCATCCTGATGAGATTAGCAAGCTTGCTAAGGTTAAAGCTC 639
| |||||||| || ||||||| ||||||||||||||||| ||||| || ||||| ||||
Sbjct 541 ACATGCAGTACTGTGTGGATCACCCTGATGAGATTAGCAAACTTGCCAAAGTTAAGGCTC 600
Query 640 AAGTGTCTGAAGTTAAAGGTGTTATGATGGAAAACATTGAGAAGGTTCTTGACCGTGGTG 699
| ||| |||| || || |||||||||||||| |||||||||||||| |||||||||||||
Sbjct 601 AGGTGACTGAGGTGAAGGGTGTTATGATGGAGAACATTGAGAAGGTCCTTGACCGTGGTG 660
Query 700 AGAAGATTGAGCTTTTGGTTGACAAAACAGAAAACCTTCGCTCACAGGCGCAAGATTTTA 759
|||| ||||||||| | ||||| ||||| || |||||||| |||||||| |||||||| |
Sbjct 661 AGAAAATTGAGCTTCTAGTTGATAAAACTGAGAACCTTCGTTCACAGGCACAAGATTTCA 720
Query 760 GAACACAAGGAACTCAAATGAGAAGAAAGATGTGGTTTCAGAACATGAAGAT-AAAGCTC 818
|| | |||||||| ||||||||||||||||||||||| | ||||||||||| ||| |||
Sbjct 721 GAGCGCAAGGAACGAAAATGAGAAGAAAGATGTGGTTTGACAACATGAAGATTAAA-CTC 779
Query 819 ATTGTCCTTGCAATTATCATTGCCTTGATTCTCATCATCATCCTCTCAATTTGTGGGGGA 878
|| ||||| | || |||||| ||||||||||||||||||||||||| |||| ||||||
Sbjct 780 ATAGTCCTCGGTATCATCATTACCTTGATTCTCATCATCATCCTCTCGGTTTGCGGGGGA 839
Query 879 TTCAA 883
| |||
Sbjct 840 TACAA 844
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45633131649
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5