BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G33130.1
Length=312
Score E
Sequences producing significant alignments: (Bits) Value
Ahg933891 jgi|Araly1|933891|scaffold_401879.1 401 1e-111
> Ahg933891 jgi|Araly1|933891|scaffold_401879.1
Length=347
Score = 401 bits (217), Expect = 1e-111
Identities = 283/314 (90%), Gaps = 7/314 (2%)
Strand=Plus/Plus
Query 1 ATGATGAATAACATGAAGCTCTTGATCATCGCTGTGATGATCATCTCGGCAGCTTTGCTT 60
||||||||| |||||||||||||||||||||| | ||||||||||||| |||||| ||
Sbjct 19 ATGATGAATTACATGAAGCTCTTGATCATCGC--CG-TGATCATCTCGGCGGCTTTGTTT 75
Query 61 CCAGCGCTT-GTGGTCGGATCTCGTCCGGTAAAATGTGACAATTGC-ATGGACGGTGGAG 118
||||| || ||||||||||||||||||||||||||| |||||||| || ||||||||||
Sbjct 76 CCAGC-ATTGGTGGTCGGATCTCGTCCGGTAAAATGTAACAATTGCAAT-GACGGTGGAG 133
Query 119 AAAAAGAAGAGATCATGAAGATGAGTTCAGGTGTAGATGTGAGCCATAGGATACTTCAAG 178
|||||||| ||||||||||||||| ||||||| | ||||||| |||||||||||||||||
Sbjct 134 AAAAAGAAAAGATCATGAAGATGAATTCAGGTATGGATGTGAACCATAGGATACTTCAAG 193
Query 179 CTAAGAGATTTATAGATTACGAAGCATTGAAGAAAAACTTACCAGCCAAACCAGATGGTA 238
||||||||| |||| ||||||| ||||||||||||||| |||||| |||||||||||||
Sbjct 194 CTAAGAGATATATAAATTACGATGCATTGAAGAAAAACAAACCAGCTAAACCAGATGGTA 253
Query 239 AACCGGATAAACCGGATAACAAATACCGACGTGGTTGCAGTGCCGCTACAGGATGTTACC 298
|||||||||||||||| |||||||||||||| ||||||| |||||||| ||||| ||||
Sbjct 254 AACCGGATAAACCGGACAACAAATACCGACGAGGTTGCACCGCCGCTACGGGATGCTACC 313
Query 299 GCTTTACAAATTAA 312
||||||| ||||||
Sbjct 314 GCTTTACGAATTAA 327
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 10988809632
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5