BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G33150.1
Length=1882
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482251 jgi|Araly1|482251|fgenesh2_kg.4__1311__AT2G33150.1 2889 0.0
Ahg470458 jgi|Araly1|470458|fgenesh2_kg.1__412__AT1G04710.1 1245 0.0
Ahg331293 jgi|Araly1|331293|fgenesh1_pm.C_scaffold_8000636 403 2e-111
> Ahg482251 jgi|Araly1|482251|fgenesh2_kg.4__1311__AT2G33150.1
Length=1769
Score = 2889 bits (1564), Expect = 0.0
Identities = 1707/1775 (96%), Gaps = 14/1775 (1%)
Strand=Plus/Plus
Query 3 TTTGGGATTATCATTTACCCGGAACGGGCAAAGCGGTGAGTCATCTTACCTTATAAATGA 62
|||||||| || |||| || |||||||||||||||||||||||||| ||||||||||||
Sbjct 1 TTTGGGATAATTATTTTCCAAGAACGGGCAAAGCGGTGAGTCATCTTTCCTTATAAATGA 60
Query 63 TCACAAACCCGAGGACTGTGAGTTTTCGTGTAGAACAAATCCTTCTCTGAGAAAAAACAA 122
|||||| |||||||||| |||| |||||||||||||||||||||||||||| |||||||
Sbjct 61 TCACAACCCCGAGGACTCTGAG-TTTCGTGTAGAACAAATCCTTCTCTGAG--AAAACAA 117
Query 123 CAGATCCGAATTTTATCTTTAATCAGCCGGAAAAAATGGAGAAAGCGATCGAGAGACAAC 182
|||||| | |||||||| ||||||| ||||||||||||||||||||||||||||||||||
Sbjct 118 CAGATCGGGATTTTATC-TTAATCAACCGGAAAAAATGGAGAAAGCGATCGAGAGACAAC 176
Query 183 GCGTTCTTCTTGAGCATCTCCGACCTTCTTCTTCTTCTTCGCACAATTACGAGGCTTCTC 242
||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 177 GCGTTCTTCTTGAACATCTCCGACCTTCTTCTTCTTCTTCGCACAATTTCGAGGCTTCTC 236
Query 243 TATCTGCTTCTGCTTGCTTGGCTGGGGACAGTGCTGCATATCAGAGGACCTCTCTCTATG 302
|||| |||||||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 237 TATCCGCTTCTGCTTGCTTGGCTGGGGACAGTGCTGCTTATCAGAGGACCTCTCTATATG 296
Query 303 GAGATGATGTTGTCATTGTCGCGGCACATAGGACTCCACTATGCAAGTCCAAACGTGGCA 362
||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 297 GAGATGATGTTGTGATTGTCGCGGCACATAGGACTCCACTATGCAAGTCTAAACGTGGCA 356
Query 363 ATTTCAAGGATACATATCCCGATGATTTGCTCGCACCTGTTTTGAGGGCATTGATAGAGA 422
| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 357 ACTTCAAGGATACATATCCTGATGATTTGCTCGCACCTGTTTTGAGGGCATTGATAGAGA 416
Query 423 AGACGAATCTAAACCCAAGTGAAGTAGGTGACATTGTTGTGGGTACTGTTTTGGCACCTG 482
|||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 417 AGACAAATCTAAACCCAAGTGAAGTAGGGGACATTGTTGTGGGTACTGTTTTGGCACCTG 476
Query 483 GATCTCAGAGAGCCAGTGAATGCAGGATGGCTGCGTTCTATGCTGGTTTCCCTGAAACCG 542
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 477 GATCTCAGAGAGCCAGTGAATGCAGGATGTCTGCGTTCTATGCTGGTTTCCCTGAAACCG 536
Query 543 TGGCTGTCAGAACTGTGAATAGACAGTGCTCATCTGGGCTTCAGGCTGTTGCTGATGTAG 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 537 TGGCTGTCAGAACTGTGAATAGACAGTGCTCATCTGGGCTTCAGGCTGTTGCTGACGTAG 596
Query 603 CCGCTGCCATTAAAGCGGGATTTTATGACATTGGTATCGGGGCTGGTTTGGAGTCCATGA 662
|||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 597 CCGCTGCCATTAAAGCTGGATTTTATGACATTGGTATCGGGGCTGGGTTGGAGTCCATGA 656
Query 663 CTACCAATCCAATGGCATGGGAAGGGTCAGTCAACCCAGCGGTGAAGAAGTTTGCACAAG 722
|||||||||||||||| |||||||||||||||||||||||||||||| |||||| |||||
Sbjct 657 CTACCAATCCAATGGCGTGGGAAGGGTCAGTCAACCCAGCGGTGAAGCAGTTTGTACAAG 716
Query 723 CGCAGAATTGTCTTCTTCCTATGGGTGTTACGTCAGAAAATGTAGCACAACGCTTTGGTG 782
| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 717 CACAGAATTGTCTTCTTCCTATGGGTGTTACTTCAGAAAATGTAGCACAACGCTTTGGTG 776
Query 783 TCTCAAGGCAGGAGCAAGATCAAGCTGCTGTTGACTCGCACAGAAAGGCAGCTGCTGCTA 842
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 777 TCTCAAGGCAGGAGCAAGATCAAGCTGCTGTTGACTCGCACAGAAAGGCAGCTGCTGCTA 836
Query 843 CTGCTGCTGGTAAATTCAAGGATGAGATCATTCCTGTTAAGACCAAGCTTGTTGACCCGA 902
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 837 CTGCTGCTGGTAAATTCAAGGATGAGATCATTCCTGTTAAGACCAAGCTTGTTGACCCAA 896
Query 903 AGACTGGTGATGAGAAACCCATTACAGTTTCTGTTGATGATGGTATCCGACCAACCACAA 962
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 897 AGACTGGTGATGAGAAACCCATTACAGTTTCTGTTGATGATGGTATCCGACCAACCACAA 956
Query 963 CTCTTGCTTCTCTTGGGAAGCTGAAGCCAGTGTTTAAGAAGGATGGCACCACTACTGCTG 1022
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 957 CTCTTGCTTCTCTTGGGAAGCTGAAGCCAGTGTTTAAGAAGGATGGCACCACAACTGCTG 1016
Query 1023 GAAATTCCAGCCAAGTAAGTGATGGTGCAGGAGCGGTTCTCCTAATGAAGAGAAGTGTTG 1082
||||||| |||||||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 1017 GAAATTCGAGCCAAGTAAGTGATGGTGCAGGAGCTGTTCTCCTCATGAAGAGAAGTGTTG 1076
Query 1083 CAATGCAAAAAGGACTTCCCGTTCTTGGTGTATTCAGGACATTTGCTGCAGTTGGTGTTG 1142
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1077 CAATGCAAAAAGGACTTCCTGTTCTTGGTGTATTCAGGACATTTGCTGCAGTTGGTGTTG 1136
Query 1143 ACCCTGCAATCATGGGTATCGGTCCAGCAGTTGCCATTCCTGCTGCAGTTAAGGCGGCTG 1202
||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 1137 ACCCTGCAATCATGGGTATTGGTCCAGCAGTTGCCATTCCTGCTGCAGTTAAGGCAGCTG 1196
Query 1203 GTTTAGAACTTGATGACATCGACTTGTTTGAGATCAATGAGGCATTTGCATCTCAGTTTG 1262
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1197 GTTTAGAACTTGATGACATTGACTTGTTTGAGATCAATGAGGCATTTGCATCTCAGTTTG 1256
Query 1263 TTTATTGCCGTAACAAATTGGGACTTGACCCAGAGAAAATCAATGTCAACGGAGGTGCAA 1322
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1257 TTTATTGCCGTAACAAATTGGGACTTGACCCAGAGAAAATCAATGTCAACGGAGGCGCAA 1316
Query 1323 TGGCCATAGGCCATCCTTTGGGCGCTACAGGAGCGCGTTGTGTTGCTACATTGTTGCACG 1382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1317 TGGCCATAGGCCATCCTTTGGGCGCTACAGGAGCGCGTTGTGTTGCTACATTGTTGCACG 1376
Query 1383 AGATGAAACGCCGTGGTAAAGACTGCCGTTTTGGAGTAGTGTCAATGTGCATTGGGACGG 1442
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1377 AGATGAAACGCCGTGGAAAAGACTGCCGTTTTGGAGTAGTGTCAATGTGCATTGGGACGG 1436
Query 1443 GGATGGGTGCAGCAGCTGTGTTTGAGAGAGGAGATGGAGTTGATGAGCTTCGCAACGCAA 1502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1437 GGATGGGTGCAGCAGCTGTGTTTGAGAGAGGAGATGGAGTTGATGAGCTTCGCAACGCAA 1496
Query 1503 GGAAAGTTGAAGCGCAAGGTCTTTTGTCCAAGGACGCTCGCTAGAGAGGACCATGCACCA 1562
||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct 1497 GGAAAGTTGAAGCGCAAGGTCTTTTGTCCAAGGACGCTCGCTAGATATCACCATGCACCA 1556
Query 1563 AAACCGTTTTTCACCTCACCTCTC---TCT-T-TTCTGGTCTTCTTGTCACTTTCTTCAG 1617
||||| || ||||||||||||||| ||| | |||||||| |||| || ||||||||||
Sbjct 1557 AAACCCTTCTTCACCTCACCTCTCACCTCTCTCTTCTGGTCCTCTTTTCCCTTTCTTCAG 1616
Query 1618 ATATTATTATAGTTTCGAATAAAGCACACAACCAATGTTTGCCTGAGTCTTGTGTTGTTC 1677
||||||||||||||| ||||||||||||||||||||||||||||||||| |||||| |||
Sbjct 1617 ATATTATTATAGTTTTGAATAAAGCACACAACCAATGTTTGCCTGAGTCGTGTGTTCTTC 1676
Query 1678 TTGACCAGGTCATGTGTTTAGTAttttttttAAGTGAAGGGGGATAATCTTTAAATCTTT 1737
||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct 1677 TTGACCAGGTCATGTGTTTAGTATTTTTT--ACGTGAAGGGGGATAATCTTTAAATCTTT 1734
Query 1738 TAT-AT--GTAAGAATATTGTTCTTCTCGAATTTC 1769
||| || |||||||||||||||||||||||||||
Sbjct 1735 TATTATATGTAAGAATATTGTTCTTCTCGAATTTC 1769
> Ahg470458 jgi|Araly1|470458|fgenesh2_kg.1__412__AT1G04710.1
Length=1394
Score = 1245 bits (674), Expect = 0.0
Identities = 1031/1204 (86%), Gaps = 22/1204 (2%)
Strand=Plus/Plus
Query 299 TATGGAGATGATGTTGTCATTGTCGCGGCACATAGGACTCCACTATGCAAGTCCAAACGT 358
|||||||||||||||||||||||||||||||| |||||| |||| |||||| | ||||||
Sbjct 40 TATGGAGATGATGTTGTCATTGTCGCGGCACAAAGGACTGCACTTTGCAAGGCAAAACGT 99
Query 359 GGCAATTTCAAGGATACATATCCC-GATGATTTGCTCGCACCTGTTTTGAG-GGCATTGA 416
|||| ||||||||||| || ||| ||||| ||||| ||| |||| ||||| || |||||
Sbjct 100 GGCAGCTTCAAGGATACTTA-CCCAGATGAGTTGCTTGCATCTGTATTGAGAGG-ATTGA 157
Query 417 TAGAGAAGACGAATCTAAACCCAAGTGAAGTAGGTGACATTGTTGTGGGTACTGTTTTGG 476
||||||| || ||| | |||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 158 TAGAGAAAACAAATGTTAACCCAAGTGAAGTTGGTGACATTGTAGTGGGTACTGTTTTGG 217
Query 477 CACCTGGATCTCAGAGAGCCAGTGAATGCAGGATGGCTGCGTTCTATGCTGGTTTCCCTG 536
||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 218 GACCAGGATCTCAGAGAGCCACTGAATGCAGGATGGCTGCGTTCTATGCTGGTTTCCCTG 277
Query 537 AAACCGTGGCTGTCAGAA-CTGTGAATAGACAGTGCTCATCTGGGCTTCAGGCTGTTGCT 595
|||| || | |||||| | ||||| |||||||| |||||||||||||| |||||||||
Sbjct 278 AAACTGTTCCAATCAGAATC-GTGAACAGACAGTGTTCATCTGGGCTTCAAGCTGTTGCT 336
Query 596 GATGTAGCCGCTGCCATTAA-AGCGGGATTTTATGACATTGGTATCGGGGCTGGTTTGGA 654
|| || ||||||||||| || ||| || ||||||||||||||||| || ||||| ||||
Sbjct 337 GACGTCGCCGCTGCCAT-AAGAGCAGGTTTTTATGACATTGGTATTGGAGCTGGGCTGGA 395
Query 655 GTCCATGACTACCAATCCAATGGCATGGGAAGGGTCAGTCAACCCAGCGGTGAAGAAGTT 714
||||||||| || ||||||| || |||| |||| |||||||||||| |||||||||||
Sbjct 396 GTCCATGACAACTAATCCAAGGGGATGGAAAGGATCAGTCAACCCAAATGTGAAGAAGTT 455
Query 715 TGCACAAGCGCAGAATTGTCTTCTTCCTATGGGTGTTACGTCAGAAAATGTAGCACAACG 774
|| |||||| || | ||| |||||||| |||||| |||| ||||| ||||||||||| ||
Sbjct 456 TGAACAAGCACATAGTTGCCTTCTTCCAATGGGTATTACTTCAGAGAATGTAGCACACCG 515
Query 775 CTTTGGTGTCTCAAGGCAGGAGCAAGATCAAGCTGCTGTTGACTCGCACAGAAAGGCAGC 834
||| ||| |||||| ||||||| ||||||||||||||||| || ||||||||||| ||
Sbjct 516 GTTTAATGTTTCAAGGGAGGAGCAGGATCAAGCTGCTGTTGATTCTCACAGAAAGGCTGC 575
Query 835 TGCTGCTACTGCTGCTGGTAAATTCAAGGATGAGATCATTCCTGTTAAGACCAAGCTTGT 894
| ||||||||||| | |||||||| |||||||| || || || || || |||||| ||||
Sbjct 576 TTCTGCTACTGCTTCCGGTAAATTTAAGGATGAAATAATCCCAGTAAAAACCAAGATTGT 635
Query 895 TGACCCGAAGACTGGTGATGAGAAACCCATTACAGTTTCTGTTGATGATGGTATCCGACC 954
|||||| || || |||||||||||| |||| || |||||||| |||||||| || |||||
Sbjct 636 TGACCCAAAAACAGGTGATGAGAAATCCATAACCGTTTCTGTGGATGATGGGATACGACC 695
Query 955 -AACCACAACTCTTGCTTCTCTTGGGAAGCTGAAG-CCAGTGTTTAAG-AAGGATGGCAC 1011
||| ||||| ||| | |||| ||||| ||| |||||||||||| ||| | || ||
Sbjct 696 TAAC-ACAACCCTTTCCGGACTTGCAAAGCT-AAGACCAGTGTTTAAGGAAG-ACGGTAC 752
Query 1012 CACTACTGCTGGAAATTCCAGCCAAGTAAGTGATGGTGCAGGAGCGGTTCTCCTAATGAA 1071
||| |||||||||||||| |||||| ||||||||||||||||||| |||||||| ||||
Sbjct 753 CACAACTGCTGGAAATTCTAGCCAATTAAGTGATGGTGCAGGAGCTGTTCTCCTCATGAG 812
Query 1072 GAGAAGTGTTGCAATGCAAAAAGGACTTCCCGTTCTTGGTGTATTCAGGACATTTGCTGC 1131
||||| ||| |||||||| ||||| |||||| ||||||||||||||||||||||||||||
Sbjct 813 GAGAAATGTCGCAATGCAGAAAGGCCTTCCCATTCTTGGTGTATTCAGGACATTTGCTGC 872
Query 1132 AGTTGGTGTTGACCCTGCAATCATGGGTATCGGTCCAGCAGTTGCCATTCCTGCTGCAGT 1191
||||||||| ||||| || |||||||| | || ||||| ||||||||||||||||||||
Sbjct 873 AGTTGGTGTGGACCCAGCCATCATGGGGGTTGGACCAGCTGTTGCCATTCCTGCTGCAGT 932
Query 1192 TAAGGCGGCTGGTTTAGAACTTGATGACATCGACTTGTTTGAGATCAATGAGGCATTTGC 1251
|||||||||||||||||||| ||||||||||||||||||||||||| ||||| |||||
Sbjct 933 CAAGGCGGCTGGTTTAGAACTCAATGACATCGACTTGTTTGAGATCAACGAGGCGTTTGC 992
Query 1252 ATCTCAGTTTGTTTATTGCCGTAACAAATTGGG-ACTTGACCCAGAGAAAA--TCAATGT 1308
|||||||||||||||||| || ||||| ||||| | ||||||| | ||||| |||||||
Sbjct 993 ATCTCAGTTTGTTTATTGTCGGAACAAGTTGGGGA-TTGACCC-G-GAAAAGGTCAATGT 1049
Query 1309 CAACGGAGGTGCAATGGCCATAGGCCATCCTTTGGGCGCTACAGGAGCGC-GTTGTGTTG 1367
||| ||||| || || ||||| || ||||| ||||| |||||||| || | | || ||||
Sbjct 1050 CAATGGAGGGGCCATAGCCATCGGACATCCCTTGGGTGCTACAGGCGC-CAGATGCGTTG 1108
Query 1368 CTACATTGTTGCACGAGATGAAACGCCGTGGTAAAGACTGCCGTTTTGGAGTAGTGTCAA 1427
| || || |||| ||||||||||||| |||||||||||| |||||||| ||||||||||
Sbjct 1109 CGACGCTGCTGCATGAGATGAAACGCCTTGGTAAAGACTGTCGTTTTGGCGTAGTGTCAA 1168
Query 1428 TGTGCATTGGGACGGGGATGGGTGCAGCAGCTGTGTTTGAGAGAGGAGATGGAGTTGATG 1487
||||||| || |||| ||||| ||||| ||||||||||||||||||| || || ||||
Sbjct 1169 TGTGCATAGGTTCGGGAATGGGAGCAGCCGCTGTGTTTGAGAGAGGAGGCGGTGTGGATG 1228
Query 1488 AGCT 1491
||||
Sbjct 1229 AGCT 1232
> Ahg331293 jgi|Araly1|331293|fgenesh1_pm.C_scaffold_8000636
Length=1374
Score = 403 bits (218), Expect = 2e-111
Identities = 803/1076 (75%), Gaps = 78/1076 (7%)
Strand=Plus/Plus
Query 437 CCAAGTGAAGTAGGTGACATTGTTGTGGGTACTGTTTTGGCACCTGGATCTCAGAGAGCC 496
||||||||||| || || || ||||| ||||| || | || || || |||||||||| |
Sbjct 277 CCAAGTGAAGTTGGGGATATCGTTGTTGGTACCGTGATAGCGCCCGGTTCTCAGAGAG-C 335
Query 497 AGT-GAATGCAGGA-TGGCTGCGTT-CTATGCTGGTTTCCCTGAAACCGTGGCTGTCAGA 553
| | || || | || | || || || | ||||||||| ||||| |||||| | || |||
Sbjct 336 AATGGAGTGTA-GAGTAGCAGC-TTATTTTGCTGGTTTTCCTGACACCGTGCCAGTTAGA 393
Query 554 ACTGTGAATAGACAGTGCTCATCTGGGCTTCAGGCTGTTGCTGATGTAGCCGCTGCCATT 613
||||| |||||||| |||||||| || || || || ||||||||||| || ||| |||||
Sbjct 394 ACTGTCAATAGACAATGCTCATCAGGACTACAAGCAGTTGCTGATGTTGCTGCTTCCATT 453
Query 614 AAAGCGGGATT-TTATGACATTGGTATCGGGGCTGGTTTGGAGTCCATGACTACCAATCC 672
| ||| || || ||| ||||||||||| || ||||| |||| || ||| | || || |
Sbjct 454 AGAGCTGG-TTATTACGACATTGGTATTGGTGCTGGAGTGGAATCAATGTCAACTGAT-C 511
Query 673 A-ATGGCATGGGAAG-GG---TCA-G--TC-AA-CCCAGCGGTGAAGAAGTTTGCAC--A 720
| || | | ||| | || ||| | || || || || | ||| | ||| | | |
Sbjct 512 ATAT-TCCT-GGAGGCGGCTTTCATGCCTCTAATCCAAGAGCACAAG-A-TTT-CCCGAA 566
Query 721 AGCGCAG-AATTGTCTT-CTTCCTATGGGTGTTACGTCAGAAAATGTAGCACAACGCTTT 778
||| | | ||||| || ||||| ||||| |||| || ||||| || ||| || | ||
Sbjct 567 AGC-CCGTGATTGT-TTGCTTCCAATGGGAATTACTTCTGAAAACGTTGCAGAAAGATTC 624
Query 779 GGTGTCTCAAG-GCAGGAGCAAGATCA-AGCTGCTGTTGACTCGCACAGAAAG-GCAGCT 835
|||||| |||| | | ||||||||| | ||||| || || || |||| || | || ||
Sbjct 625 GGTGTCACAAGAG-AAGAGCAAGAT-ATGGCTGCGGTGGAGTCTCACA-AACGCGCTGCA 681
Query 836 GCTGCTACT-GCTG-CTGGTAAATTCAAGGATGAGATCATTCCTGTTAAGACCAAGCTTG 893
||||||| | || | |||||||| |||||||||| || ||||||||| || ||| | |
Sbjct 682 GCTGCTA-TCGC-GTCTGGTAAACTCAAGGATGAAATAATTCCTGTTGCTACTAAGATCG 739
Query 894 TTGA-CCCGAAGACTGGTG-ATGAGAAACCCATTACAGTTTCTGTTGATGATGGTATCCG 951
| || |||| ||||| | | ||||| | || || ||||||||||| ||| | ||
Sbjct 740 TGGACCCCG-AGACTAAAGCA-GAGAAGGCAATCGTTGTATCTGTTGATGACGGTGTACG 797
Query 952 ACC-AAC-CACAACTCTTGCTTCTCTTGG-GAAGCTGAAG-CCAGTGTTTAAGA-AGGAT 1006
|| ||| || |||| | || || ||| ||||||||| || || ||||| | || |
Sbjct 798 TCCAAACTCA-AACT-TGGCAGATC-TGGCAAAGCTGAAGACC-GTCTTTAA-ACAGAAC 852
Query 1007 GGCACCACTACTGCTGGAAATTCCAGCCAAG-TAAGTGATGGTGCAGGAGCGGTTCTCCT 1065
|| |||| || ||||| ||| | |||| || | ||||||||||| ||||| || || ||
Sbjct 853 GGTTCCACCACAGCTGGTAATGCTAGCC-AGATCAGTGATGGTGCTGGAGCTGTACTGCT 911
Query 1066 AATGAAGAGAAGTGTT-GCAATGCAA-AAAGGACTTCCCGTTCTTGGTGTATTCAGGACA 1123
||||||||||||| || |||||| || || ||||||||| ||||||| ||||||||||
Sbjct 912 AATGAAGAGAAGT-TTGGCAATG-AAGAAGGGACTTCCCATTCTTGGAGTATTCAGGAGT 969
Query 1124 TTTGCTG-CAGTTGGTGTTGA-CCCTGCAATCATGGGTATCGGTCCAGCAGTTGCCATTC 1181
||||||| | |||||| || || | | | |||||||||||||| || ||||||||||
Sbjct 970 TTTGCTGTTA-CTGGTGTGGATCCAT-CTGTAATGGGTATCGGTCCGGCTGTTGCCATTC 1027
Query 1182 CTGCTGCAGTTAAGGC-GGCTGGTTTAGAACTTGA-TGACATCGACT-TGTTTGAGATCA 1238
| |||||| ||| | || || | ||| | | || || || | | || |||||||
Sbjct 1028 CCGCTGCAACTAA-ACTTGCAGGCCT-CAACGTCAGCGATATTGA-TCTATTCGAGATCA 1084
Query 1239 ATGAGGCATTTGCATCTCAGTTTGTTTATTGCCGTAACAAAT-TGG-GACTTGACCCAGA 1296
||||||||||||||||||||| ||| || || | || ||| | | | || || |
Sbjct 1085 ATGAGGCATTTGCATCTCAGTATGTGTACTGTTGCAA-AAAGCTAGAG-CTAGATAT-G- 1140
Query 1297 GAAAA--TCAATGTCAACGGAGGTGCAATGGCCATAGGCCATCCTTTGGGCGCTACAGGA 1354
||||| ||||||| || ||||| || || || || ||||||||| |||| |||||||||
Sbjct 1141 GAAAAGGTCAATGTTAATGGAGGAGCCATTGCTATTGGCCATCCTCTGGGTGCTACAGGA 1200
Query 1355 GCGCGTTGTGTTGCTACATTGTTGCACGAGATGAAACGCCGTGGTAAAGACTGCCGTTTT 1414
|| || |||||||| ||||||||||| |||||||| || | || ||||| ||||| |||
Sbjct 1201 GCTCGATGTGTTGCGACATTGTTGCATGAGATGAAGCGGAGAGGAAAAGATTGCCGCTTT 1260
Query 1415 GGAGTAGTGTCAATGTGCATTGGGACGGGGATGGGTGCAGCAGCTGTGTTTGAGAG 1470
|||||| | ||||||||||| || || || ||||| || |||||||| ||||||||
Sbjct 1261 GGAGTAATCTCAATGTGCATAGGCACTGGAATGGGAGCTGCAGCTGTTTTTGAGAG 1316
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70695494720
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5