BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G33160.1
Length=1995
Score E
Sequences producing significant alignments: (Bits) Value
Ahg933893 jgi|Araly1|933893|scaffold_401881.1 1921 0.0
> Ahg933893 jgi|Araly1|933893|scaffold_401881.1
Length=1260
Score = 1921 bits (1040), Expect = 0.0
Identities = 1156/1213 (95%), Gaps = 4/1213 (0%)
Strand=Plus/Plus
Query 1 ATGGCGTCTAGGGTTCTTCTGATTTTGTGTGTGCCTTCTCTCTTCTTCTTCCTCGCCGCT 60
|||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 26 ATGGCGTCTAGGGTTCTTCTGATTTTGTGTCTGTCTTCTCTCTTCTTCTTCCTCGCCGCT 85
Query 61 TCCACGAAGGAATATCCCGGCCAACCAAAAATCTTTGACGTCAGAAACTATGGTGCTCGC 120
|||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| |
Sbjct 86 TCCACGAAGGAATATCCCAGCCAAGCAAAAATCTTTGACGTCAGAAACTATGGTGCTCAC 145
Query 121 GCAGATAGCCAAAGAGATAACGCTTT-TGCGTTTACAAAGGCGTGGAACGAAGCTTGCCA 179
| ||| ||| ||||||||||||||| | |||||||||||||||||||||||||||||||
Sbjct 146 GGTGATGGCCGAAGAGATAACGCTTTCT-CGTTTACAAAGGCGTGGAACGAAGCTTGCCA 204
Query 180 ATGGAGTTACGGAAGATCAACGGTCTATATTCCTTCCGGAATATTCTATCTCCGTCAAGT 239
||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 205 ATGGAGTAACGGAAGATCAACGGTCTATATTCCTCCCGGAATATTCTATCTCCGTCAAGT 264
Query 240 AACATTCTCTGGTCCTTGCAAAAGCTCTATAACtttttttATCAGAGGAACTTTATTGGC 299
||| ||| ||||||||||||||| | |||| |||||| ||||||||||||||||||||||
Sbjct 265 AACGTTCACTGGTCCTTGCAAAAACCCTATTACTTTTATTATCAGAGGAACTTTATTGGC 324
Query 300 TCCTCGTAATCCTTACGCCATCAACCAAGAAGAATGGATACTTTTCAAGTACGTCGATAA 359
|||||||||||||||||| ||||| ||||| |||||||||||||||||||||||||||||
Sbjct 325 TCCTCGTAATCCTTACGCTATCAAACAAGATGAATGGATACTTTTCAAGTACGTCGATAA 384
Query 360 TCTCACTGTTACTGGCGGTGGATTACTTGACGGTCAAGGATCTTATTCTTGGCCTCTCAA 419
|||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 385 TCTCACGGTTACTGGCGGTGGATTACTTGACGGCCAAGGATCTTATTCTTGGCCTCTCAA 444
Query 420 TGATTGTAACAAAAACACTAATTGTCGTACACTAGCTATGAACATTGGGTTTGCTTTTGT 479
|||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 445 TGATTGTAACAAGAACACCAATTGTCGTACACTAGCTATGAACATTGGGTTTGCTTTTGT 504
Query 480 TAAATCATCGAAGATCAACGGTCTAAGGTCCATCAATAGCAAAATGGGGCATTTCAACTT 539
||||||||||||||||||||||||||| || ||||| ||||||||||| |||||||||||
Sbjct 505 TAAATCATCGAAGATCAACGGTCTAAGATCTATCAACAGCAAAATGGGACATTTCAACTT 564
Query 540 ATTCTCCGTTGAGGATTTTAACATTACCGGAGTTACCATCACTGCTCCCGGAGATAGCCC 599
|||||| || ||||||||||||||||| || ||||||||||||||||| |||||||||||
Sbjct 565 ATTCTCGGTCGAGGATTTTAACATTACAGGCGTTACCATCACTGCTCCTGGAGATAGCCC 624
Query 600 TAATACCGACGGAATCAAGATCGGGAAATCTAGCCATATGCAA-ATCTACAACGTCACTA 658
|||||||||||||||||||||||||||||||||||||||| || |||| |||||||||||
Sbjct 625 TAATACCGACGGAATCAAGATCGGGAAATCTAGCCATATG-AATATCTTCAACGTCACTA 683
Query 659 TCGGAACCGGTGACGATTGTATCGCAATCCTTGACGGAACCAGCAATTTGGATATCTCTG 718
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 684 TCGGAACCGGTGACGATTGTATCGCAATCCTTGACGGAACCAGCAATTTGGATATCTCTG 743
Query 719 ATGTCAGATGCGGACCAGGGCATGGTATTAGTGTCGGGAGTCTCGGGAGATATAAAGAGG 778
||||||| ||||||||||||||||| |||||||||||||| || ||||||||||||||||
Sbjct 744 ATGTCAGGTGCGGACCAGGGCATGGGATTAGTGTCGGGAGCCTTGGGAGATATAAAGAGG 803
Query 779 AGAAGAACGTCCAGGGCTTAACCGTCAGAAACTCGATTATCAACGGTACCACAGACGGTT 838
|||||||||||||||||||||| |||||||||||||||||||||||||| || |||||||
Sbjct 804 AGAAGAACGTCCAGGGCTTAACAGTCAGAAACTCGATTATCAACGGTACAACTGACGGTT 863
Query 839 TACGTATCAAGACATGGGCTAAGTCCGTATCGCAGATTTCGGTTTCGAATTTCTTGTACG 898
||||||||||||||||||||||||| ||||||||||||||||||||||||||| | ||||
Sbjct 864 TACGTATCAAGACATGGGCTAAGTCGGTATCGCAGATTTCGGTTTCGAATTTCCTCTACG 923
Query 899 AGAACATCCAAATGATCAATGTTGGAAACCCTATCGTCATTGATCAGCAGTATTGTCCAC 958
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 924 AGAACATCCAAATGATCAATGTTGGAAACCCTATCGTCATTGATCAGCAGTATTGTCCAC 983
Query 959 ACGGGCAATGTGATAGTCCTGGAAAGTATGCTTCTCATGTTCAGATAAAAGACGTCAAGT 1018
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 984 ACGGACAATGTGATAGTCCTGGAAAGTATGCTTCTCATGTTCAGATAAAAGACGTCAAGT 1043
Query 1019 ATAACAATATTTGGGGAACTTCCACAAGCAAAGAGGCTTTGAAGATGCAATGTAGTAAAA 1078
||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1044 ATAACAAAATTTGGGGAACTTCGACAAGCAAAGAGGCTTTGAAGATGCAATGTAGTAAAG 1103
Query 1079 CGTTTCCTTGTCAAGACGTTGAGCTCTCAAATATCAACTTGCACTACGTTGGACGTGACG 1138
||||||||||||||||||| ||||||||||||||||||||| | ||||||||||||||||
Sbjct 1104 CGTTTCCTTGTCAAGACGTCGAGCTCTCAAATATCAACTTGAAATACGTTGGACGTGACG 1163
Query 1139 GTTTAGTCACGGCTTTGTGTGAGAACGTTGGTGGTTCGATTCGTGGCAAGATTGTTCCTG 1198
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1164 GTTTAGTCACGGCTTTGTGTGAGAACGTTGGTGGATCGATTCGTGGCAAGATTGTTCCTG 1223
Query 1199 CAAATTGCAGGAT 1211
|||||||| ||||
Sbjct 1224 CAAATTGCCGGAT 1236
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74999692405
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5