BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G33180.1
Length=670
Score E
Sequences producing significant alignments: (Bits) Value
Ahg497470 jgi|Araly1|497470|fgenesh2_kg.569__1__AT2G33180.1 745 0.0
Ahg482253 jgi|Araly1|482253|fgenesh2_kg.4__1313__AT2G33180.1 745 0.0
> Ahg497470 jgi|Araly1|497470|fgenesh2_kg.569__1__AT2G33180.1
Length=623
Score = 745 bits (403), Expect = 0.0
Identities = 483/522 (93%), Gaps = 4/522 (1%)
Strand=Plus/Plus
Query 10 AGTCGCCATGGAACTGGTGTCTCTTCCGATCCACCACCGTACGGCG-CCGCCGAATTTTC 68
||||||||||||||||||| |||||||||||||||||||||||| | | | || ||||
Sbjct 1 AGTCGCCATGGAACTGGTGGCTCTTCCGATCCACCACCGTACGG-GTTTGTCAAAATTTC 59
Query 69 CACCACTCGAAACTGGAAATCCAGTAGCTAACCGGATTGGACAAGCTCTACGATTCAGCA 128
||||||| |||| ||| ||||| ||| |||||||||||||| |||||||||||||||||
Sbjct 60 CACCACTTAAAACCGGATATCCATTAGTTAACCGGATTGGACTAGCTCTACGATTCAGCA 119
Query 129 ATGTTAGAATGAGAAAGCCCGCGTATTTAGGAACGATCTTATCTG-AGAAATCAAGAGCA 187
||||||||||||||||||||| ||||||||||||||||||| | | ||||||| ||||||
Sbjct 120 ATGTTAGAATGAGAAAGCCCGTGTATTTAGGAACGATCTTAAC-GAAGAAATCCAGAGCA 178
Query 188 AGAACATTAACGACGGCGGAAGCAGTTTCCGGAAGTGGAGTTTCGCTTCCGCCGCTGGAT 247
|||||| |||||||| |||||||||||||||| | ||||||||||||||||| ||||||
Sbjct 179 AGAACACTAACGACGACGGAAGCAGTTTCCGGCGGAGGAGTTTCGCTTCCGCCTCTGGAT 238
Query 248 TTGACTGAGGATAATATCCATTTGGTACTATCCGAAGCTCGTATCGAGCTAGCACAACTC 307
||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 239 TTGACGGAGGATAATATCCATCTGGTACTATCCGAAGCTCGTATCGAGCTAGCACAACTC 298
Query 308 TTCGACTCATCGGTTGGGATAACAGGACAAGTAGAGTTAGTGGAACTAGACGGACCATTC 367
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 299 TTCGACTCATCGGTTGGGATAACAGGACAAGTAGAGTTAGTGGAACTAGACGGGCCATTC 358
Query 368 GTTACGATAAGTTTAAGAGGCAAGTTTTGGCATACGCGTGCAATGGTTCTAGCTCGACTT 427
|||| |||||||||||||||||||||||||||||| |||||||||||||||||| || ||
Sbjct 359 GTTAAGATAAGTTTAAGAGGCAAGTTTTGGCATACACGTGCAATGGTTCTAGCTAGAATT 418
Query 428 GGGAACTACTTAAAACAGAGGATCCCTGAGATTTTGGAGGTTAATATTGAAGATGAAAAG 487
||||||||||| ||||||||||||||||| |||||||||||| | ||||||||||| |||
Sbjct 419 GGGAACTACTTGAAACAGAGGATCCCTGAAATTTTGGAGGTTGAGATTGAAGATGAGAAG 478
Query 488 CAACTCGATGATAGTCCTGCAAATTTCTAAATCTTCCATTTT 529
|||||||||||||||||||||||||||||||| |||||||||
Sbjct 479 CAACTCGATGATAGTCCTGCAAATTTCTAAATTTTCCATTTT 520
> Ahg482253 jgi|Araly1|482253|fgenesh2_kg.4__1313__AT2G33180.1
Length=623
Score = 745 bits (403), Expect = 0.0
Identities = 483/522 (93%), Gaps = 4/522 (1%)
Strand=Plus/Plus
Query 10 AGTCGCCATGGAACTGGTGTCTCTTCCGATCCACCACCGTACGGCG-CCGCCGAATTTTC 68
||||||||||||||||||| |||||||||||||||||||||||| | | | || ||||
Sbjct 1 AGTCGCCATGGAACTGGTGGCTCTTCCGATCCACCACCGTACGG-GTTTGTCAAAATTTC 59
Query 69 CACCACTCGAAACTGGAAATCCAGTAGCTAACCGGATTGGACAAGCTCTACGATTCAGCA 128
||||||| |||| ||| ||||| ||| |||||||||||||| |||||||||||||||||
Sbjct 60 CACCACTTAAAACCGGATATCCATTAGTTAACCGGATTGGACTAGCTCTACGATTCAGCA 119
Query 129 ATGTTAGAATGAGAAAGCCCGCGTATTTAGGAACGATCTTATCTG-AGAAATCAAGAGCA 187
||||||||||||||||||||| ||||||||||||||||||| | | ||||||| ||||||
Sbjct 120 ATGTTAGAATGAGAAAGCCCGTGTATTTAGGAACGATCTTAAC-GAAGAAATCCAGAGCA 178
Query 188 AGAACATTAACGACGGCGGAAGCAGTTTCCGGAAGTGGAGTTTCGCTTCCGCCGCTGGAT 247
|||||| |||||||| |||||||||||||||| | ||||||||||||||||| ||||||
Sbjct 179 AGAACACTAACGACGACGGAAGCAGTTTCCGGCGGAGGAGTTTCGCTTCCGCCTCTGGAT 238
Query 248 TTGACTGAGGATAATATCCATTTGGTACTATCCGAAGCTCGTATCGAGCTAGCACAACTC 307
||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 239 TTGACGGAGGATAATATCCATCTGGTACTATCCGAAGCTCGTATCGAGCTAGCACAACTC 298
Query 308 TTCGACTCATCGGTTGGGATAACAGGACAAGTAGAGTTAGTGGAACTAGACGGACCATTC 367
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 299 TTCGACTCATCGGTTGGGATAACAGGACAAGTAGAGTTAGTGGAACTAGACGGGCCATTC 358
Query 368 GTTACGATAAGTTTAAGAGGCAAGTTTTGGCATACGCGTGCAATGGTTCTAGCTCGACTT 427
|||| |||||||||||||||||||||||||||||| |||||||||||||||||| || ||
Sbjct 359 GTTAAGATAAGTTTAAGAGGCAAGTTTTGGCATACACGTGCAATGGTTCTAGCTAGAATT 418
Query 428 GGGAACTACTTAAAACAGAGGATCCCTGAGATTTTGGAGGTTAATATTGAAGATGAAAAG 487
||||||||||| ||||||||||||||||| |||||||||||| | ||||||||||| |||
Sbjct 419 GGGAACTACTTGAAACAGAGGATCCCTGAAATTTTGGAGGTTGAGATTGAAGATGAGAAG 478
Query 488 CAACTCGATGATAGTCCTGCAAATTTCTAAATCTTCCATTTT 529
|||||||||||||||||||||||||||||||| |||||||||
Sbjct 479 CAACTCGATGATAGTCCTGCAAATTTCTAAATTTTCCATTTT 520
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24589281465
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5