BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G33190.1
Length=1140
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482254 jgi|Araly1|482254|fgenesh2_kg.4__1314__AT2G33190.1 1650 0.0
Ahg482255 jgi|Araly1|482255|fgenesh2_kg.4__1315__AT2G33200.1 113 2e-24
Ahg933899 jgi|Araly1|933899|scaffold_401887.1 67.6 2e-10
> Ahg482254 jgi|Araly1|482254|fgenesh2_kg.4__1314__AT2G33190.1
Length=1158
Score = 1650 bits (893), Expect = 0.0
Identities = 1070/1153 (93%), Gaps = 22/1153 (2%)
Strand=Plus/Plus
Query 5 CTAGAGATGATAATGGTTGGTCAAAGCTTTATCCTGATCTTTTGCGATCGATATTCGAAA 64
|||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 11 CTAGAGATGATAATGGTTGGTCAAAGCTTTATCCTGATCTCTTGCGATCGATCTTCGAAA 70
Query 65 GCTTGAGTTGCTTGGATTTTCATCGAGCAGGAACCGTTTGTTCAAACTGGTATGCCGTAT 124
|||| || ||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 71 GCTTAAGCTGCTTGGATTTTCATCGAGCAAGAACCGTTTGTTCAAACTGGTATGCCGTAT 130
Query 125 CTCGATCATGTCCTCTGTATCCATGGAGAATCGTATTCCGAGGTAAGAATTCTGTCTTGT 184
||||| |||||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 131 CTCGAACATGTCCTTTGTATCCATGGAGAATCGTAATCCGAGGTAAGAATTCTGTCTTGT 190
Query 185 TTGATCCAATACAAGACAAGATCTACACCAAAAATCTTCTTGGAATCGACTTGTCCAAAA 244
|||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 191 TTGATCCAATACAAGACAAGATCTACACAAAAAATCTTCTTGGAATCGACTTCTCCAAAA 250
Query 245 TC-CATTGTCTTGCTAGTTATGGTAATTGGATCCTAATCGTAGATCCTCGT-TTAGATTT 302
| |||||||| |||||||| ||||||||||| ||||| || |||| |||| || |||||
Sbjct 251 -CTCATTGTCTCGCTAGTTACGGTAATTGGATACTAATAGTTGATCTTCGTCTT-GATTT 308
Query 303 CTACCTCTTGAACGTGTTTACTCGCGAGACGATCAATCTTCCTTCATTAGAGTCATCGCT 362
| | |||||||| ||||||||||| |||| ||||||||||||||||||||||||||| ||
Sbjct 309 CCATCTCTTGAATGTGTTTACTCGAGAGAGGATCAATCTTCCTTCATTAGAGTCATCCCT 368
Query 363 ACGTGGTGATCGTCCTTTTAGATTCATACGAAATGATGACGAGTCTGGATACTTTCTTGA 422
|||||||||||||||||||||||||||||| || ||||||| | ||||||||| |||||
Sbjct 369 ACGTGGTGATCGTCCTTTTAGATTCATACG-AA--ATGACGACTTTGGATACTTCCTTGA 425
Query 423 GCTCTACGGCACCAAGTTTCTCTTGACGTGGAACGATTTTAGGTTTGAGAAAACTGCTAT 482
|||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 426 GCTCTACGGCACTAAGTTTCTCTTGACGTGGAACGATTTTAGGTTTGAAAAAACTGCTAT 485
Query 483 CCTGTGGGTAAACGGGAGAAATGGAGATTACGTTGTTGCTTGGGCTATCAAACAGTTCTA 542
|||||||||||||||||||||||||||||| | ||||||||||||||||||||||| ||
Sbjct 486 TCTGTGGGTAAACGGGAGAAATGGAGATTACATCGTTGCTTGGGCTATCAAACAGTTTTA 545
Query 543 TATCTTCTCATACaaaaaaaTAGG--A--A--A------TGAT-G--ATGATGATAAGCG 587
||||||||||||||| |||||||| | | | |||| | |||||||||||||
Sbjct 546 TATCTTCTCATACAAGAAAATAGGAAATGATGATGTTGGTGATGGTAATGATGATAAGCG 605
Query 588 ATGGAGTATCACATGCACACAATGTGAGGATATGGCTTATAAAGATAACAAGCTTTATGT 647
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 606 ATGGAGTATCACATGCACACAATGCGAGGATATGGCTTATAAAGATAACAAGCTTTATGT 665
Query 648 GTATACATTTGATCATTACATCAACATTCTTGATTTCTCTGGAAATTCTCCTAAAGAACC 707
|||||| ||||||||||||||||||||| |||||||||||||| ||| |||||||||| |
Sbjct 666 GTATACTTTTGATCATTACATCAACATTTTTGATTTCTCTGGATATTGTCCTAAAGAAAC 725
Query 708 CATGGAAGAAAACCCTTATCTTAGTCATCCTTTTAGTTTCGTAGATGCGATTTATAAGTT 767
||||||||||||||||||||||| |||||||||| ||||||||||| |||||||||||||
Sbjct 726 CATGGAAGAAAACCCTTATCTTAATCATCCTTTTCGTTTCGTAGATACGATTTATAAGTT 785
Query 768 GAGACTTGCGGTCACAAGGGAAGGAAAGGTTCTAATCGTTCTGAGTTTAGTAGGGTTAGA 827
|||||||||||||||||| | |||| |||||||||||||||||||| |||||||||||||
Sbjct 786 GAGACTTGCGGTCACAAGAGCAGGAGAGGTTCTAATCGTTCTGAGTATAGTAGGGTTAGA 845
Query 828 TAAAAAGATTTGCATCTACAAGCTGAATCTTAAGATTGGTGATTGGGAAATAGTAGAGTC 887
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 846 TAAAAAGTTTTGCATCTACAAGCTGAATCTTAAGATTGGTGATTGGGAAATAGTAGAGTC 905
Query 888 CTTGGGAGATGAAATGTTGATTTTTGGTCATGGGGTCACAATAAGAGCACCGGACAAAGA 947
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 906 TTTGGGAGATGAAATGTTGATTTTTGGTCATAGGGTCACAATAAGAGCACCGGACAAAGA 965
Query 948 TATTAGTGGGGGAGGACTCAAGAGTGATTCAATATGTTTTCTTTATGATGACTATTTGTC 1007
||||||||| ||||||||||||||| ||||||||||||| |||||||||||| |||||||
Sbjct 966 TATTAGTGGCGGAGGACTCAAGAGTAATTCAATATGTTTCCTTTATGATGACCATTTGTC 1025
Query 1008 TGATCATTATCTTACAATGAAGAGACAACCAATTTGCGGTGTGTTCGATCTTGCGACAAG 1067
||||||| ||||||||||||||| |||||||||||||||||||||||||||||| || ||
Sbjct 1026 TGATCATCATCTTACAATGAAGACACAACCAATTTGCGGTGTGTTCGATCTTGCTACTAG 1085
Query 1068 TACAATCACATGGCATACAAGATTAGAAGACCTGTCTTCGAAGATTTGTTGGTTTGTTCC 1127
|||||||||||||||||||||||||||||| |||||||| ||| ||||||||||||||||
Sbjct 1086 TACAATCACATGGCATACAAGATTAGAAGATCTGTCTTCCAAGGTTTGTTGGTTTGTTCC 1145
Query 1128 AGGATGTGCTTAG 1140
||||| ||| |||
Sbjct 1146 AGGATATGCATAG 1158
> Ahg482255 jgi|Araly1|482255|fgenesh2_kg.4__1315__AT2G33200.1
Length=1019
Score = 113 bits (61), Expect = 2e-24
Identities = 123/151 (81%), Gaps = 12/151 (8%)
Strand=Plus/Plus
Query 836 TTTGCATCTACAAGCTGAATCTT---AAGATTGGTGATTGGGAAATAGTAGAGTC-CTTG 891
||| |||||| ||| ||||| || ||| || || ||||||||| |||||| || |||
Sbjct 824 TTTACATCTATAAGATGAAT-TTGGGAAG-TT-GTAATTGGGAAAGAGTAGATTCTCTT- 879
Query 892 GGAGATGAAATGTTGATTTTTGGTCATGGGGTCACAATAAGAGCACCGGA-CAAAGATAT 950
|||| ||| |||||||| ||||||||||||||||||||||||||||| || | |||||
Sbjct 880 GGAGGTGAGATGTTGATATTTGGTCATGGGGTCACAATAAGAGCACC-GATCTTAGATAG 938
Query 951 TAGTGG-GGGAGGACTCAAGAGTGATTCAAT 980
|| ||| | ||| ||||||||||||||||
Sbjct 939 TAATGGATTG-GGAATCAAGAGTGATTCAAT 968
> Ahg933899 jgi|Araly1|933899|scaffold_401887.1
Length=842
Score = 67.6 bits (36), Expect = 2e-10
Identities = 38/39 (97%), Gaps = 0/39 (0%)
Strand=Plus/Plus
Query 1042 TGCGGTGTGTTCGATCTTGCGACAAGTACAATCACATGG 1080
|||||||| ||||||||||||||||||||||||||||||
Sbjct 696 TGCGGTGTATTCGATCTTGCGACAAGTACAATCACATGG 734
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42507052455
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5