BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G33200.1
Length=1131
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482255 jgi|Araly1|482255|fgenesh2_kg.4__1315__AT2G33200.1 1461 0.0
Ahg948892 jgi|Araly1|948892|scaffold_800779.1 784 0.0
Ahg333130 jgi|Araly1|333130|fgenesh1_pm.C_scaffold_47000002 451 4e-126
> Ahg482255 jgi|Araly1|482255|fgenesh2_kg.4__1315__AT2G33200.1
Length=1019
Score = 1461 bits (791), Expect = 0.0
Identities = 949/1025 (93%), Gaps = 12/1025 (1%)
Strand=Plus/Plus
Query 1 ATGTCGAGAACTCGTTATGATTGGTCCAAGCTTTGTCACGATATTTTGCGATTGATACTC 60
||||| ||||||||||| |||||||| || |||||||||||| ||||||||| |||||||
Sbjct 1 ATGTCAAGAACTCGTTACGATTGGTCAAAACTTTGTCACGATCTTTTGCGATCGATACTC 60
Query 61 GAAAGCTTGCACTACAAGGATTATCATCGAGCAAGAACCGTTTGCTCTA-ACTGGTACAC 119
||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct 61 GAAAGCTTGCACTACAAGGATTATCATCGAGCAAGAACCGTTTGCTC-ACACTGGTACAC 119
Query 120 AGCTTCCACAACGTGTAAGCGACCTCTGTATCCATGGCGAATCAAATTCAACAAGATTTC 179
| |||| |||| |||||||||||||||||||||||||||||| ||||||| ||| |||
Sbjct 120 CGTTTCCTCAACATGTAAGCGACCTCTGTATCCATGGCGAATCTTATTCAACGAGAATTC 179
Query 180 AACTTCACTCTTCGATCCAAG-AGAAGACAAGATCCACGAAATTCAACATCCCGGAATCG 238
|||||||||||||||||| | |||||| ||||| ||||||||||||| |||||||||||
Sbjct 180 AACTTCACTCTTCGATCC-CGTAGAAGAAAAGATTCACGAAATTCAACTTCCCGGAATCG 238
Query 239 AATTCTCCGATAGGAATGTTCTTGCTAGCTGCAGCAATTGGTTCTTGATGGTTGATTCTG 298
|||| ||||||||| ||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 239 AATTTTCCGATAGGTATGTTCTTGCTAGTTGCAGCAATTGGTTCTTGATGGTTGATTCTG 298
Query 299 GTTTAGAATTCTATCTCCTGAA--TGCTTTCACTCGTGAGAGAATCAATCTTCCATCGAT 356
||||||| |||||||| || || || ||| |||||||||||||||||||||||||||||
Sbjct 299 GTTTAGATTTCTATCTTCTAAACGTG-TTT-ACTCGTGAGAGAATCAATCTTCCATCGAT 356
Query 357 GGAGTCATCGATTCTTGGTAAAGAGAGATTGGAAAAAGAAGTTGCGTGGAAACATTTCAT 416
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 357 GGAGTCATCGATTCTTGGTAAAGAGAGATTGGAAAAAGAAGTTGAGTGGAAACATTTCAT 416
Query 417 CGAGCGTACAGACATCATCTCTACCAAGAAACAGGCTTGTCTTTGGATAAATGAGAGAAC 476
||||||||| ||||| | ||| | ||||||||| ||||||||||||||||||||||||||
Sbjct 417 CGAGCGTACGGACATAAACTCCAACAAGAAACAAGCTTGTCTTTGGATAAATGAGAGAAC 476
Query 477 AGGGGATTATGTTGTGGCTTGGAGTATCAAACAGCACTATTTGTTCACTTACAAGAAAGG 536
||||||||||||||| |||||||||||||||||| |||| ||||||||||||||||||||
Sbjct 477 AGGGGATTATGTTGTAGCTTGGAGTATCAAACAGTACTACTTGTTCACTTACAAGAAAGG 536
Query 537 AGATGATTCATGGTTGAATCTTGAAGGCACTAAGTGTGTGTCTATGGCTTTGAATAAGGA 596
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 537 AGATGATTCATGGTTGAATCTTGAAGACACTAAGTGTGTGTCTATGGCTTTGAATAAGGA 596
Query 597 CTACAAGCTTTATGTGTATGCATTAGATAACTCCATCAAGATTTTTGATTTATATGGTGA 656
||||||||||||||||||| ||||||||||||| ||||||||||||||||||| ||||||
Sbjct 597 CTACAAGCTTTATGTGTATACATTAGATAACTCGATCAAGATTTTTGATTTATCTGGTGA 656
Query 657 GTTTCCTAGTGAGATTGTCGA-GGAGAATCCGTATCGCAACCATCCGTTTAGCTTTCGGT 715
||||||||||||||||||||| || |||||||||||| |||||||||||||||||||||
Sbjct 657 GTTTCCTAGTGAGATTGTCGAAGG-GAATCCGTATCGTAACCATCCGTTTAGCTTTCGGG 715
Query 716 TTGTTTCGAAGCCCGAGGAACACGCTTGGAAGCAGGTTGTAGCGATTACTAACTCTGGAG 775
|||||||||| |||| |||| ||||||||| |||| |||||||| |||| ||||||||||
Sbjct 716 TTGTTTCGAAACCCGGGGAATACGCTTGGAGGCAGATTGTAGCGGTTACAAACTCTGGAG 775
Query 776 AGGTTTTGATGATCGTGAGCTTAAAAGGGTTAGA-AGATAAGCGTTTGTTTTATATATAT 834
|||||||||||||||||||||| ||||||||||| | |||| ||||||||||| || |||
Sbjct 776 AGGTTTTGATGATCGTGAGCTTGAAAGGGTTAGATA-ATAAACGTTTGTTTTACATCTAT 834
Query 835 AAGATGGATTTTGGAAGTTGTAACTGGGAGAGAGTAGATTCTCTTGGAGGTGAGATGTTG 894
|||||| |||| ||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 835 AAGATGAATTTGGGAAGTTGTAATTGGGAAAGAGTAGATTCTCTTGGAGGTGAGATGTTG 894
Query 895 ATATTTGGTCATGGGGTTACCATAAGAGCACCGATCTTAGATATTAATGGTTTGGGAATC 954
||||||||||||||||| || |||||||||||||||||||||| |||||| |||||||||
Sbjct 895 ATATTTGGTCATGGGGTCACAATAAGAGCACCGATCTTAGATAGTAATGGATTGGGAATC 954
Query 955 AAGAGTGATTCAATCTGTTTCCGCGGTGATGATCTTTGGCCACTTAGTCAGCTTTTTATT 1014
||||||||||||||||| |||| ||||||||||||||||||| ||||||| ||||||| |
Sbjct 955 AAGAGTGATTCAATCTGCTTCCACGGTGATGATCTTTGGCCAGTTAGTCATCTTTTTAAT 1014
Query 1015 CCCAT 1019
|||||
Sbjct 1015 CCCAT 1019
> Ahg948892 jgi|Araly1|948892|scaffold_800779.1
Length=1153
Score = 784 bits (424), Expect = 0.0
Identities = 910/1135 (80%), Gaps = 71/1135 (6%)
Strand=Plus/Plus
Query 14 GTT-ATGATTGGTCCAAGCTTTGTC-ACGATATTTTGCGATTGATACTCGAAAGCTTG-- 69
||| |||||||||| |||||||| | ||||| ||||||||| || |||||| |||||
Sbjct 30 GTTCATGATTGGTCAAAGCTTTG-CGACGATCTTTTGCGATCAATCCTCGAAGGCTTGAA 88
Query 70 CACTA-CAAGGATTATCATCGAGCAAGAACCGTTTGCTCTAACTGGTACA-CAGCTTCCA 127
||||| ||| |||| ||||||||| || | |||||||| |||||||| | || ||| |
Sbjct 89 CACTACCAAAGATTTTCATCGAGCGAGTAGTGTTTGCTCAAACTGGTATACCA-TTTCAA 147
Query 128 CAACGTGTAAGCGACC------TCTGTATCCATGGCGAATCAAATTCAACA-AGATTTCA 180
||| ||||||||||| ||||| |||||||| |||| |||||| | ||| ||||
Sbjct 148 GAACTTGTAAGCGACCTATAAATCTGTTTCCATGGCAAATCCTATTCAA-AGAGAATTCA 206
Query 181 ACTTCACTCTTCGATCCAAG-AGAAGAC-AAGATCCACGAAATTCAACATCCCGGAATCG 238
|||| ||||| | ||| | |||| || || || |||||||||||||||||||||||||
Sbjct 207 ACTTTGCTCTTTG-TCCCTGAAGAAAACAAAAAT-CACGAAATTCAACATCCCGGAATCG 264
Query 239 AATTCTCCGATAGGAATGTTCTTGCTAGCTGCAGCAATTGGTTCTTGATGGTTGATTCTG 298
| || || |||||| |||||||| ||||||||||||||||| |||||||| |||||| |
Sbjct 265 ACTTTTCGGATAGGTATGTTCTTACTAGCTGCAGCAATTGGCTCTTGATGATTGATTATA 324
Query 299 GTTTAGAATTCTATCTCCTGAATGCT-TTCACTCGTGAGAGAATCAATCTTCCATCGATG 357
| |||| || | |||| | || | | ||||||||||||||||||||||||||||| ||
Sbjct 325 ATGTAGATTTTTTTCTCATAAACG-TGTTCACTCGTGAGAGAATCAATCTTCCATCCATA 383
Query 358 GAGTCATCGATTCTTGGTAAAGAGAGATTGGAAAAAGAAGTTGCGTGGAAACATTTCATC 417
|||||||||||| ||||| |||| || || ||||||| ||
Sbjct 384 GAGTCATCGATTATTGGT--------CTTGG----TCAA---GC------ACATTTCGTC 422
Query 418 GAGCGTACAGACATCATCTCTACCAAGAAACAGGCTTGTCTTTGGATAAATGAGAGAACA 477
|||| ||| ||||| || ||| | || ||||| ||||||||||||||| |||| | ||||
Sbjct 423 GAGCCTACCGACATAATTTCTGCGAAAAAACAAGCTTGTCTTTGGATAGATGAAACAACA 482
Query 478 GGGGATTATGTTGTGGCTTGGAG-TATCAAACAGCACTATTTGTTCACT-TACAAGAAAG 535
|||||||||||| |||||||| ||| || || || | || |||| | |||||||||
Sbjct 483 AAGGATTATGTTGTTGCTTGGAGTTAT-AACCAATACCACTTATTCA-TAAACAAGAAAG 540
Query 536 GAGATGATTCATGGTTGAATCTTGAAGGCACTAAGTGTGTGTCTATGGCTTTG-AATAAG 594
||||||||||||||| || |||||||| ||| |||||||||| ||| || ||| |||||
Sbjct 541 GAGATGATTCATGGTCGAGTCTTGAAGACACAAAGTGTGTGTATATTGC-TTGTAATAAA 599
Query 595 GACTACAAGCTTTATGTGTATGCATTAGATAACTCCATCAAGATTTTTGATTTATATGGT 654
||||||||||||||||||||| ||||| ||| | |||||||||||||||| ||| | ||
Sbjct 600 GACTACAAGCTTTATGTGTATACATTATATAGTTGCATCAAGATTTTTGATATATCTAGT 659
Query 655 GAGTT-TCCTAG-TGAGATTGTCGAGGAGAATCCGTATCGCAACCATCCGTTTAGCTTTC 712
|| || ||| | ||||||||||| || || ||||| || |||||||||||| ||||||
Sbjct 660 GA-TTCCCCT-GAAGAGATTGTCGAAGAAAACCCGTACCGTAACCATCCGTTTCGCTTTC 717
Query 713 G--GTTTGTTTCGAAGCC-CGAGGAACACGCTTGGAAGCAG-GTTGTAGCGATTACTAAC 768
| || || | || || | |||||| |||||||||| | || ||| |||||| |
Sbjct 718 GCCAATT-TTCCCAA-CCTTG-GGAACATTATTGGAAGCAGAG-AGTGGCGGTTACTAGC 773
Query 769 TCTGGAGAGGTTTTGATGATCGTGAGCTTAAAAGGGTTAGAAGATAAGCGTTTGTTTTAT 828
| ||||||||||||||||||||||||||| |||||||| ||| |||| ||||||||||||
Sbjct 774 TTTGGAGAGGTTTTGATGATCGTGAGCTTGAAAGGGTTGGAAAATAAACGTTTGTTTTAT 833
Query 829 ATATATAAGATGGATTTTGGA-AGTTGTAACTGGGAGAGAGTAGATTCTCTTGGAGGTGA 887
|| |||||||| || |||||| | |||| ||||| |||||||||||||||||||||||
Sbjct 834 ATCTATAAGAT-GAATTTGGAGAAAAGTAATTGGGAAAGAGTAGATTCTCTTGGAGGTGA 892
Query 888 GATGTTGATATTTGGTCATGGGGTTACCATAAGAGCACCGATCTTAGATATTAATGGTTT 947
|||||||||||||||||||||||| || || |||||||| || |||||||| | ||||
Sbjct 893 GATGTTGATATTTGGTCATGGGGTCACGATTAGAGCACCAATGAAAGATATTAGTAGTTT 952
Query 948 GGGAATCAAGAGTGATTCAATCTGTTTC-CGCGGTGATGATCTTTGGCCACTTAGTCAGC 1006
||||||||||||||||||||| | |||| | |||||| ||||| |||||| ||| | |
Sbjct 953 GGGAATCAAGAGTGATTCAATTTTTTTCTC-CGGTGAAGATCTCTGGCCAGGAAGTTATC 1011
Query 1007 TTTTTATTCCCATCACACAACCT-ATGTGCGGTGTATTTGATCTTGCGACAAGTACAATC 1065
| || ||||| |||||||| | || |||||||| || |||||| ||||||||||||||
Sbjct 1012 CGTATAATCCCAACACACAACTTTAT-TGCGGTGTGTTCGATCTTACGACAAGTACAATC 1070
Query 1066 ACATGGCCTAAATCATTAGATGCTTCAGT-CTTGAAGAGTTTC-TGGTTTGTTCC 1118
|||||| ||||| ||||||||| ||| || |||||||| | || ||||| |||||
Sbjct 1071 ACATGGTCTAAACCATTAGATGTTTC-GTTCTTGAAGA-TATCGTGGTTCGTTCC 1123
> Ahg333130 jgi|Araly1|333130|fgenesh1_pm.C_scaffold_47000002
Length=1035
Score = 451 bits (244), Expect = 4e-126
Identities = 571/721 (79%), Gaps = 53/721 (7%)
Strand=Plus/Plus
Query 14 GTT-ATGATTGGTCCAAGCTTTGTC-ACGATATTTTGCGATTGATACTCGAAAGCTTG-- 69
||| |||||||||| |||||||| | ||||| ||||||||| || |||||| |||||
Sbjct 10 GTTCATGATTGGTCAAAGCTTTG-CGACGATCTTTTGCGATCAATCCTCGAAGGCTTGAA 68
Query 70 CACTA-CAAGGATTATCATCGAGCAAGAACCGTTTGCTCTAACTGGTACA-CAGCTTCCA 127
||||| |||||||| ||||||||| || | |||||||| |||||||| | || ||| |
Sbjct 69 CACTACCAAGGATTTTCATCGAGCGAGTAGTGTTTGCTCAAACTGGTATACCA-TTTCAA 127
Query 128 CAACGTGTAAGCGACC------TCTGTATCCATGGCGAATCAAATTCAACA-AGATTTCA 180
||| ||||||||||| ||||| |||||||| |||| |||||| | ||| ||||
Sbjct 128 GAACTTGTAAGCGACCTATAAATCTGTTTCCATGGCAAATCCTATTCAA-AGAGAATTCA 186
Query 181 ACTTCACTCTTCGATCCAAG-AGAAGAC-AAGATCCACGAAATTCAACATCCCGGAATCG 238
|||| ||||| | ||| | |||| || || || ||||||||||||||||| |||||||
Sbjct 187 ACTTTGCTCTTTG-TCCCTGAAGAAAACAAAAAT-CACGAAATTCAACATCCTGGAATCG 244
Query 239 AATTCTCCGATAGGAATGTTCTTGCTAGCTGCAGCAATTGGTTCTTGATGGTTGATTCTG 298
| || || |||||| |||||||| ||||||||||||||||| |||||||| |||||| |
Sbjct 245 ACTTTTCGGATAGGTATGTTCTTACTAGCTGCAGCAATTGGCTCTTGATGATTGATTATA 304
Query 299 GTTTAGAATTCTATCTCCTGAATGCT-TTCACTCGTGAGAGAATCAATCTTCCATCGATG 357
| |||| || | |||| | || | | ||||||||||||||||||||||||||||| ||
Sbjct 305 ATGTAGATTTTTTTCTCATAAACG-TGTTCACTCGTGAGAGAATCAATCTTCCATCCATA 363
Query 358 GAGTCATCGATTCTTGGTAAAGAGAGATTGGAAAAAGAAGTTGCGTGGAAACATTTCATC 417
|||||||||||| ||||| |||| || | | | |||||| ||
Sbjct 364 GAGTCATCGATTATTGGTC--------TTGGTCAA-G------C----A--CATTTCGTC 402
Query 418 GAGCGTACAGACATCATCTCTACCAAGAAACAGGCTTGTCTTTGGATAAATGAGAGAACA 477
|||| ||| ||||| || ||| | || ||||| |||||||||||||| |||||| ||||
Sbjct 403 GAGCCTACCGACATAATTTCTGCGAAAAAACAAGCTTGTCTTTGGATTGATGAGACAACA 462
Query 478 GGGGATTATGTTGTGGCTTGGAGT-ATCAAACAGCACTATTTGTTCACTTA-CAAGAAAG 535
|||||||||||| ||||||||| || || || || | || |||| | | ||||||||
Sbjct 463 AAGGATTATGTTGTTGCTTGGAGTTAT-AACCAATACCACTTATTCA-TAAACAAGAAAG 520
Query 536 GAGATGATTCATGGTTGAATCTTGAAGGCACTAAGTGTGTGTCTATGGCTT-TGAATAAG 594
||||||||||||||| || |||||||| ||| |||||||||| ||| |||| | |||||
Sbjct 521 GAGATGATTCATGGTCGAGTCTTGAAGACACAAAGTGTGTGTATATTGCTTGT-AATAAA 579
Query 595 GACTACAAGCTTTATGTGTATGCATTAGATAACTCCATCAAGATTTTTGATTTATATGGT 654
||||||||||||||||||||| | ||||||| | |||||||||||||||| ||| ||||
Sbjct 580 GACTACAAGCTTTATGTGTATACGTTAGATAGTTGCATCAAGATTTTTGATATATCTGGT 639
Query 655 GAGTTTCC-T-AGTGAGATTGTCGAGGAGAATCCGTATCGCAACCATCCGTTTAGCTTTC 712
|| || || | | ||||||||||| || || ||||| || |||||||||||| ||||||
Sbjct 640 GA-TTCCCCTGAA-GAGATTGTCGAAGAAAACCCGTACCGTAACCATCCGTTTTGCTTTC 697
Query 713 G 713
|
Sbjct 698 G 698
Score = 254 bits (137), Expect = 1e-66
Identities = 260/317 (82%), Gaps = 17/317 (5%)
Strand=Plus/Plus
Query 757 GCGATTACTAACTCTGGAGAGGTTTTGATGATCGTGAGCTTAAAAGGGTTAGAAGATAAG 816
||| |||||| || ||||||||||||||||||||||||||| |||||||| ||| ||||
Sbjct 709 GCGGTTACTAGCTTTGGAGAGGTTTTGATGATCGTGAGCTTGAAAGGGTTGGAAAATAAA 768
Query 817 CGTTTGTTTTATATATATAAGATGGATTTTGGA-AGTTGTAACTGGGAGAGAGTAGATTC 875
||||||||||| || |||||||| || |||||| | |||| ||||| |||||||||||
Sbjct 769 CGTTTGTTTTACATCTATAAGAT-GAATTTGGAGAAAAGTAATTGGGAAAGAGTAGATTC 827
Query 876 TCTTGGAGGTGAGATGTTGATATTTGGTCATGGGGTTACCATAAGAGCACCGATCTTAGA 935
|||||||||||||||||||||||||||||||||||| || || ||||||||||| |||
Sbjct 828 TCTTGGAGGTGAGATGTTGATATTTGGTCATGGGGTCACGATTAGAGCACCGATGAAAGA 887
Query 936 TATTAATGGTTTGGGAATCAAGAGTGATTCAATCTGTTTC-CGCGGTGATGATCTTTGGC 994
||||| | ||||| | | ||||||||| | |||| | |||||| ||||| ||||
Sbjct 888 TATTAGTAGTTTG--A-----G--TGATTCAATTTTTTTCTC-CGGTGAAGATCTCTGGC 937
Query 995 CACTTAGTCAGCTTTTTATTCCCATCACACAACCT-ATGTGCGGTGTATTTGATCTTGCG 1053
|| ||| | | | || ||||| ||||||| | || |||||||| || |||||| ||
Sbjct 938 CAGGAAGTTATCCGTATAATCCCA--ACACAACTTTAT-TGCGGTGTGTTCGATCTTACG 994
Query 1054 ACAAGTACAATCACATG 1070
|||||||||||||||||
Sbjct 995 ACAAGTACAATCACATG 1011
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42163946202
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5