BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G33205.1
Length=1269
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482256 jgi|Araly1|482256|fgenesh2_kg.4__1316__AT2G33205.1 1869 0.0
Ahg933971 jgi|Araly1|933971|scaffold_401959.1 536 1e-151
> Ahg482256 jgi|Araly1|482256|fgenesh2_kg.4__1316__AT2G33205.1
Length=1278
Score = 1869 bits (1012), Expect = 0.0
Identities = 1202/1289 (93%), Gaps = 31/1289 (2%)
Strand=Plus/Plus
Query 1 ATGAATGGATCAGCGGAA---GCTACACGGACAAGACCATTGCAGATCAGTCCCGGTGAT 57
|||||||||||||||||| |||||||||| |||||||||||||||||||| ||||||
Sbjct 1 ATGAATGGATCAGCGGAAGCTGCTACACGGATGAGACCATTGCAGATCAGTCCTGGTGAT 60
Query 58 TTAGAGGCTGCTCATCTAGATGAACTCATAATGGAAATAGAACAGAGGAGTCTCTATTAT 117
||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 61 TTAGAGGCTGCTCATCTAGATGAACTCATAAGGGAAATAGAACAGAGGAGTCTCTTTTAC 120
Query 118 TACCAAGAGAAAAACAAGTCCTTGAGAGCTCGTTATACCTACGGAACCATTTTCTTGATC 177
|||||||||||||||||||| ||||||||||||||| |||||| ||||| ||||||||
Sbjct 121 TACCAAGAGAAAAACAAGTCTTTGAGAGCTCGTTATGTCTACGGGACCATCTTCTTGATT 180
Query 178 ATAAATC-TATGCGCTTGGTTTATCCGTGACTACGCACAAAAGGCTCTGGCCTTGCTTCC 236
||||| | |||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 181 ATAAA-CTTATGCGCTTGGTTTATTCGTGACTACGCACAAAAGGCTCTGGCCTTGCTTCC 239
Query 237 ATATGTCAGCAGTTGTGGACCAGAAGGAAGTCGTTGTTTCCATACGCTTGGAGTACTCCG 296
|| | | |||||||||||||||||||| |||||||||||||||||||||||| ||
Sbjct 240 --AT-T----ATTTGTGGACCAGAAGGAAGTCATTGTTTCCATACGCTTGGAGTACTTCG 292
Query 297 CG--TGA-G--T--TT-AGGATGTTTCATATTTTACTTTGTTATGTTCCTCTCAACATGG 348
|| | | | | || | ||| |||||||||||| ||||||||||||||||||||
Sbjct 293 CGTTTTATGTATCCTTAACAATG-AAGATATTTTACTTTCTTATGTTCCTCTCAACATGG 351
Query 349 AACACAATGAAACTCCACGAAGCTCAAAACAGCTGGCACTCGGATAATTGGATCTTTAAG 408
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 352 AACACAATGAAACTCCACGAAGCTCAAAACAGTTGGCACTCGGATAATTGGATCTTCAAG 411
Query 409 TTTTTTCTACTGGTTATAGTCATGGTAGCTTCTTTCTTCATACCTCAGCTTTACATCCAA 468
|||||||| |||||| ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 412 TTTTTTCTGCTGGTTTTAGCCATGGTAGCTTCTTTCTTCATACCTCAGCTTTACATCCAA 471
Query 469 ATTTATGGAGAAATCGCTCGTGTTGGTGCAGGGATATTTCTTGGTCTGCAACTTGTAAGT 528
||||| || |||||||| || |||||||||||||||||||||||||| ||||||||||||
Sbjct 472 ATTTACGGGGAAATCGCGCGAGTTGGTGCAGGGATATTTCTTGGTCTTCAACTTGTAAGT 531
Query 529 GTTATCGAATTCATCACTTGGTGGAATAACTATTGGATGCCTCAAAACCAAAGTAAGCAA 588
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 532 GTTATCGAATTCATCACTTGGTGGAATAACTATTGGATGCCTCATGACCAAAGTAAGCAA 591
Query 589 AGCTGTTCTTTTGGTTTGGTCATGTCAATAGTTTTCTACATCGGTTCTGTTTGCGGGATC 648
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 592 AGCTGCTCTTTTGGTTTGGTCATGTCAATAGTTTTCTACATCGGTTCTGTTTGCGGGATC 651
Query 649 GCAGTGATGTACTACTTTTATGGAGCTTCTACTGCTTGTGGCCTCAATATATTCTTCATC 708
|||||||||||||||||||||| |||||| |||||||||||||||||||||||||| |||
Sbjct 652 GCAGTGATGTACTACTTTTATGCAGCTTCGACTGCTTGTGGCCTCAATATATTCTTTATC 711
Query 709 TCATGGACTGTTATACTTTTAATCGTTATGATGGTTATTTCCTTGCATTCAAAGGTGAAG 768
|||||||||||| | ||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 712 TCATGGACTGTTGTTCTTTTAATCGTTATGATGGTTATGTCCTTGCATTCAAAGGTAAAG 771
Query 769 AATAGAGGTCTTTTGTCTTCCGGGATTATGGCTTCTTACATTGTCTTCCTATGTTGGTCT 828
|||||||| ||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 772 AATAGAGGACTTTTGTCTTCTGGGATTATGGCTTCCTACATTGTCTTCCTATGTTGGTCT 831
Query 829 GCGATCAGAAGCGAACCTTCACATACAAAATGCAATGCGCATACTCAAAACAGCCATACT 888
||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct 832 GCGATCAGAAGCGAACCTTCACATACAAAATGCAATGCGCATACTCAAAACGGTCATACT 891
Query 889 GATTGGACTACAATACTGAGTTTCCTTATAGCTATAGGCGCCATTGTGATGGCAACATTC 948
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 892 GATTGGATTACAATACTGAGTTTCCTTATAGCTATAGGCGCCATTGTGATGGCAACATTC 951
Query 949 TCAACCGGGATCGATTCAGAATCCTTCAGG-T----TT-CGTAAAGATGAAGCGAAAGAA 1002
|||||||||||||||||||||||||||||| | || |||||||||||||||||||||
Sbjct 952 TCAACCGGGATCGATTCAGAATCCTTCAGGTTCGAGTTCCGTAAAGATGAAGCGAAAGAA 1011
Query 1003 GAAGACGATATACCATACAGCTATGGATTCTTCCACCTTGTGTTCTCCTTAGGAGCAATG 1062
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1012 GAAGACGATATACCATACAGCTATGGATTCTTCCACCTTGTGTTCTCCTTAGGAGCAATG 1071
Query 1063 TACTTTGCTATGTTGTTTATCAGCTGGAACCTTTCACATTC--CACAGAGAAATGGAGCA 1120
||||||||||||||||||||||||||||||||||||||||| | || | ||||||||||
Sbjct 1072 TACTTTGCTATGTTGTTTATCAGCTGGAACCTTTCACATTCAGCTCA-A-AAATGGAGCA 1129
Query 1121 TTGATGTTGGATGGACAAGCACATGGGTGAAGATAGTGAACGAGTGGTTTGCCGCAGCGA 1180
|||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1130 TTGATGTTGGTTGGACAAGCACATGGGTGAAGATAGTGAACGAGTGGTTTGGCGCAGCGA 1189
Query 1181 TTTACCTTTGGAAGTTGATTGCTCCTATTGTGAGACAGCATAGAGTTCACGAACAACCTC 1240
||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 1190 TTTACCTTTGGAAGTTGATTGGTCCTATTGTGAGACAGCCTAGAGTTCACGAACAACCTC 1249
Query 1241 AGCCAACAGCAGCAGAAGTTCACAGATAG 1269
||||||||||||||||||| ||||||||
Sbjct 1250 AGCCAACAGCAGCAGAAGTGGACAGATAG 1278
> Ahg933971 jgi|Araly1|933971|scaffold_401959.1
Length=1154
Score = 536 bits (290), Expect = 1e-151
Identities = 341/366 (93%), Gaps = 2/366 (1%)
Strand=Plus/Plus
Query 475 GGAGAAATCGCT-CGTGTTGGTGCAGGGATATTTCTTGGTCTGCAACTTGTAAGTGTTAT 533
|||||||||| | ||||||||||||| ||||||||||||||| |||||||| || |||||
Sbjct 537 GGAGAAATCG-TGCGTGTTGGTGCAGCGATATTTCTTGGTCTTCAACTTGTCAGCGTTAT 595
Query 534 CGAATTCATCACTTGGTGGAATAACTATTGGATGCCTCAAAACCAAAGTAAGCAAAGCTG 593
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 596 CGAATTCATCACTTGGTGGAATAACTATTGGATGCCTCATGACCAAAGTAAGCAAAGCTG 655
Query 594 TTCTTTTGGTTTGGTCATGTCAATAGTTTTCTACATCGGTTCTGTTTGCGGGATCGCAGT 653
|| ||||||||||| ||||||| |||||||||||||||||||||||| |||||||||||
Sbjct 656 CTCCTTTGGTTTGGTTATGTCAACAGTTTTCTACATCGGTTCTGTTTGTGGGATCGCAGT 715
Query 654 GATGTACTACTTTTATGGAGCTTCTACTGCTTGTGGCCTCAATATATTCTTCATCTCATG 713
||||||||||||||||| |||||| |||||||||| ||||||||| ||||||||||||||
Sbjct 716 GATGTACTACTTTTATGCAGCTTCCACTGCTTGTGTCCTCAATATGTTCTTCATCTCATG 775
Query 714 GACTGTTATACTTTTAATCGTTATGATGGTTATTTCCTTGCATTCAAAGGTGAAGAATAG 773
||||||| | ||| ||||||||||||||||||| ||||||||||||||||||||| ||||
Sbjct 776 GACTGTTGTTCTTCTAATCGTTATGATGGTTATGTCCTTGCATTCAAAGGTGAAGTATAG 835
Query 774 AGGTCTTTTGTCTTCCGGGATTATGGCTTCTTACATTGTCTTCCTATGTTGGTCTGCGAT 833
||| |||||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 836 AGGACTTTTGTCTTCCGGGATTATGGCTTCCTACATTGTCTTTCTATGTTGGTCTGCGAT 895
Query 834 CAGAAG 839
||||||
Sbjct 896 CAGAAG 901
Score = 298 bits (161), Expect = 7e-80
Identities = 216/242 (89%), Gaps = 5/242 (2%)
Strand=Plus/Plus
Query 1 ATGAATGGATCAGC-GGAA--GCTACA-CGGACAAGACCATTGCAGATCAGTCCCGGTGA 56
||||||||| |||| | || ||| || ||| ||| |||||||||||||||| |||||
Sbjct 21 ATGAATGGACCAGCAGAAACTGCTCCACCGG-TGAGATCATTGCAGATCAGTCCTGGTGA 79
Query 57 TTTAGAGGCTGCTCATCTAGATGAACTCATAATGGAAATAGAACAGAGGAGTCTCTATTA 116
|||||||||||||||||| ||||||||||||| |||| ||||||||||||||||||||||
Sbjct 80 TTTAGAGGCTGCTCATCTTGATGAACTCATAAGGGAAGTAGAACAGAGGAGTCTCTATTA 139
Query 117 TTACCAAGAGAAAAACAAGTCCTTGAGAGCTCGTTATACCTACGGAACCATTTTCTTGAT 176
|||||||||||||||||||||||||||||||| ||| ||| |||||||| ||||||||
Sbjct 140 CTACCAAGAGAAAAACAAGTCCTTGAGAGCTCGATATGTCTATGGAACCATCTTCTTGAT 199
Query 177 CATAAATCTATGCGCTTGGTTTATCCGTGACTACGCACAAAAGGCTCTGGCCTTGCTTCC 236
||||| |||||||||||||| || |||||||| ||||||||||||||||||||||||||
Sbjct 200 TATAAACCTATGCGCTTGGTTCATTCGTGACTATGCACAAAAGGCTCTGGCCTTGCTTCC 259
Query 237 AT 238
||
Sbjct 260 AT 261
Score = 294 bits (159), Expect = 9e-79
Identities = 191/205 (93%), Gaps = 8/205 (4%)
Strand=Plus/Plus
Query 907 AGTTTCCTTATAGCTATAGGCGCCATTGTGATGGCAACATTCTCAACCGGGATCGATTCA 966
|||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 900 AGTTTCCTTATAGCTATAGGCGCCATAGTGATGGCAACATTCTCAACTGGGATCGATTCA 959
Query 967 GAATCCTTC-A----G-GTTTCGTAAAGATGAAGCGAAAGAAGAAGACGATATACCATAC 1020
||||||||| | | ||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 960 GAATCCTTCAAGTTCGAGTTCCGTAAAGATGAAGCTAAAGAAGAAGACGATATACCATAC 1019
Query 1021 AGCTATGGATTCTTCCACCTTGTGTTCTCCTTAGGAGCAATGTACTTTGCTATGTTGT-T 1079
||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||| |
Sbjct 1020 AGCTATGGATTCTTCCACCTTGTTTTCTCCTTAGGAGCGATGTACTTTGCTATGTTGTGT 1079
Query 1080 T-ATCAGCTGGAACCTTTCACATTC 1103
| |||||||||||||||||||||||
Sbjct 1080 TTATCAGCTGGAACCTTTCACATTC 1104
Score = 237 bits (128), Expect = 2e-61
Identities = 148/158 (94%), Gaps = 0/158 (0%)
Strand=Plus/Plus
Query 316 ATATTTTACTTTGTTATGTTCCTCTCAACATGGAACACAATGAAACTCCACGAAGCTCAA 375
||||||| | || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 285 ATATTTTTCCTTATTATGTTCCTCTCAACATGGAACACAATGAAACTCCACGAAGCTCAA 344
Query 376 AACAGCTGGCACTCGGATAATTGGATCTTTAAGTTTTTTCTACTGGTTATAGTCATGGTA 435
||||| |||||||||||| |||||| ||| ||||||||||| |||||| ||| |||||||
Sbjct 345 AACAGTTGGCACTCGGATTATTGGAGCTTCAAGTTTTTTCTGCTGGTTTTAGCCATGGTA 404
Query 436 GCTTCTTTCTTCATACCTCAGCTTTACATCCAAATTTA 473
||||||||||||||||||||||||||||||||||||||
Sbjct 405 GCTTCTTTCTTCATACCTCAGCTTTACATCCAAATTTA 442
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47424908748
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5