BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G33230.1
Length=1296
Score E
Sequences producing significant alignments: (Bits) Value
Ahg901141 jgi|Araly1|901141|Al_scaffold_0004_1791 1973 0.0
> Ahg901141 jgi|Araly1|901141|Al_scaffold_0004_1791
Length=1296
Score = 1973 bits (1068), Expect = 0.0
Identities = 1223/1299 (94%), Gaps = 6/1299 (0%)
Strand=Plus/Plus
Query 1 ATGTGTAATAACAATAACACAAGTTGTGTCAACATCTCAAGTATGCTTCAGCCTGAGGAC 60
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGTGTGATAACAATAACACAAGTTGTGTCAACATCTCAAGTATGCTTCAGCCTGAGGAC 60
Query 61 ATTTTCTCCCGTCGTTGCATCTGGGTGAATGGGCCTGTCATCGTCGGTGCTGGCCCATCA 120
||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 61 ATTTTCTCCCGTCGTTGCATCTGGGTGAACGGGCCGGTCATCGTCGGTGCTGGCCCATCA 120
Query 121 GGCCTAGCTGTCGCCGCCGACCTGAAACGCCAAGAAGTTCCGTTTGTAATCCTCGAGCGA 180
|||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 121 GGCCTAGCTGTCGCGGCCGACCTGAAACGCCAAGAAGTTCCGTTTATAATCCTCGAGCGA 180
Query 181 GCTAACTGCATAGCTTCTCTGTGGCAAAACAGAACCTATGATCGTCTCAAGCTTCATCTC 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 GCTAACTGCATAGCTTCTCTGTGGCAAAACAGAACCTATGATCGTCTCAAGCTTCATCTC 240
Query 241 CCAAAGCAATTCTGTCAATTACCCAATTTACCCTTCCCCGAGGATATCCCGGAGTATCCA 300
|| |||| ||||||||||||||||||||||||||| || || ||| ||||||||||||||
Sbjct 241 CCCAAGCGATTCTGTCAATTACCCAATTTACCCTTTCCGGAAGATTTCCCGGAGTATCCA 300
Query 301 ACGAAGTACCAGTTTATTGAGTACCTTGAGTCCTACGCTACCCACTTTGATCTCCGCCCC 360
|| ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 301 ACCAAGTACCAGTTTATTGAGTACCTTGAGTCGTACGCAACCCACTTTGATCTCCGCCCA 360
Query 361 AAGTTCAATGAGACGGTCCAATCAGCTAAATATGACAAGAGGTTTGGGCTGTGGCGGGTC 420
|||||||||||||| || || |||||||||||||||||||||||||||||||||||||||
Sbjct 361 AAGTTCAATGAGACTGTTCAGTCAGCTAAATATGACAAGAGGTTTGGGCTGTGGCGGGTC 420
Query 421 CAGACTGTTTTGAGAAGCGAGCTGCTCGGTTATTGTGAGTTCGAGTATATATGCAGGTGG 480
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 421 CAGACTGTTTTGAGAAGCGAGCTGCTCGGTTATTGTGAGTTCGAGTATATTTGCAGGTGG 480
Query 481 CTCGTGGTGGCGACGGGAGAGAATGCTGAGAAAGTGGTGCCGGAGTTTGAGGGTTTAGAA 540
|||||||| ||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 481 CTCGTGGTAGCGACCGGAGAAAATGCTGAGAAAGTGGTGCCGGAGTTTGAGGGTTTAGAA 540
Query 541 GATTTTGGTGGTGATGTTCTTCACGCTGGAGATTATAAATCCGGCGAGAGGTACCGCGGA 600
||||||||||||||||||||||| ||||| ||||| ||||| || |||||||||||||||
Sbjct 541 GATTTTGGTGGTGATGTTCTTCATGCTGGTGATTACAAATCTGGTGAGAGGTACCGCGGA 600
Query 601 AAACGAGTTCTCGTAGTTGGATGTGGAAACTCAGGCATGGAAGTCTCTCTTGATCTATGC 660
|| |||||||| ||||| |||||||||||||| ||||||||||| ||||| ||||||| |
Sbjct 601 AACCGAGTTCTGGTAGTCGGATGTGGAAACTCCGGCATGGAAGTATCTCTCGATCTAT-C 659
Query 661 AATC-ATGATGCGAGCCCATCAATGGTCGTTCGAAGCTCCGTTCATGTATTACCGAGAGA 719
|| | | ||||| |||||||||||||||||||| |||||||||||||||||||||| |||
Sbjct 660 AAACCACGATGCAAGCCCATCAATGGTCGTTCGTAGCTCCGTTCATGTATTACCGATAGA 719
Query 720 -AGTTCTTGGGAAGTCGACGTTCGAGTTAAGTGTAACAATGATGAAATGGATGCCGGTTT 778
| ||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||
Sbjct 720 GA-TTCTTGGGAAGTCAACGTTCGAGTTAGGTGTAACAATGATGAAATGGATGCCGGTTT 778
Query 779 GGCTCGTGGACAAGACTCTTCTCGTTCTCACAAGGTTACTTCTAGGGAACACCGATAAGT 838
|||| |||||||||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 779 GGCTTGTGGACAAGACTCTGCTCGTTCTCACAAGGTTACTTCTGGGGAACACCGATAAGT 838
Query 839 ATGGGCTCAAGAGGCCTGAAATTGGACCGTTAGAGCTGAAGAACACCGCAGGTAAAACTC 898
| ||||| |||||||||||||| ||||||||||||||||| ||||||| |||||||||||
Sbjct 839 ACGGGCTTAAGAGGCCTGAAATGGGACCGTTAGAGCTGAAAAACACCGTAGGTAAAACTC 898
Query 899 CCGTGCTAGACATCGGAGCCATTTCAATGA-TCAAATCAGGAAAGATCAAAATCGTAGCG 957
|||| ||||||||||| ||| |||||| || ||||||| ||||||||||||||||| ||
Sbjct 899 CCGTACTAGACATCGGGGCCTTTTCAA-GAATCAAATCGGGAAAGATCAAAATCGTCCCG 957
Query 958 GGAATAGCTAAGTTTGGTCCGGGAAAGGTCGAACTCGTGGATGGTCGAGTTCTGCAGATT 1017
||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 958 GGAATAGCTAAGTTTGGTCTGGGAAAGGTCGAACTCGTGGATGGTCGAGCTCTGCAGATT 1017
Query 1018 GATTCAGTGATTCTTGCCACTGGTTACAGAAGCAATGTCCCTTCATGGCTTAAGGAAAAC 1077
|||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1018 GATTCAGTCATTCTTGCCACTGGTTACAGAAGTAATGTCCCTTCATGGCTTAAGGAAAAC 1077
Query 1078 GACTTGGGTGAGATTGGGATAGAGAAAAACCCATTTCCAAAAGGGTGGAAAGGGAAGGCT 1137
||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1078 GACTTGGCAGAGGTTGGGATAGAGAAAAACCCATTTCCAAAAGGGTGGAAAGGGAAGGCC 1137
Query 1138 GGATTGTATGCGGTGGGATTCACCGGAAGAGGACTCTCAGGTGCATCGTTCGATGCAATG 1197
|| |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1138 GGGTTGTATGCGGTGGGGTTCACCGGAAGAGGACTCTCAGGTGCATCCTTCGATGCAATG 1197
Query 1198 AGTGTAGCTCATGACATTGCCAATAGCTGGAAAGAAGAAACTAAGCAACAGATCAAAACT 1257
|||||||||||||| ||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 1198 AGTGTAGCTCATGATATTGCCACTAGCTGGAAAGAAGAAACTATGCAACAGATCAAAACT 1257
Query 1258 GTCGCTACTCGCCACCGTCGTTGTATTTCACACTTTTGA 1296
|| |||| |||||||||||||||||||||||||||||||
Sbjct 1258 GTGGCTAGTCGCCACCGTCGTTGTATTTCACACTTTTGA 1296
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48454227507
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5