BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G33233.1

Length=393
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg933906 jgi|Araly1|933906|scaffold_401894.1                        274    3e-73
  Ahg900581 jgi|Araly1|900581|Al_scaffold_0004_1231                    257    3e-68


> Ahg933906 jgi|Araly1|933906|scaffold_401894.1
Length=307

 Score =  274 bits (148),  Expect = 3e-73
 Identities = 170/180 (94%), Gaps = 4/180 (2%)
 Strand=Plus/Plus

Query  119  CAGAGATCAAAGCAAAGATCAATGGACTAGAATGCTTTAATACATGTACGCCTT-ATTAT  177
            ||||||||||||||| ||| ||||| || ||||||||||||||||||||||||| | |||
Sbjct  127  CAGAGATCAAAGCAACGATAAATGGCCTCGAATGCTTTAATACATGTACGCCTTCA-TAT  185

Query  178  GATGATTATAAATGCAATGTGGACTGCCTATCATCGGGCTACCCGGCAGGAGATTGTCAT  237
            |||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||
Sbjct  186  GATGATTATAAATGCAATCTGGACTGCCTATCATCGGGGTACCCGGCAGGAGATTGTCAT  245

Query  238  ATC-GTGTCTCCTTCTCAACCTAAAAAATGTTGTTGTTATTAATTAAAATTGATGATCCG  296
            | | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  246  A-CTGTGTCTCCTTCTCAACCTAAAAAATGTTGTTGTTATTAATTAAAATTGATGATCCG  304


> Ahg900581 jgi|Araly1|900581|Al_scaffold_0004_1231
Length=171

 Score =  257 bits (139),  Expect = 3e-68
 Identities = 162/172 (94%), Gaps = 5/172 (3%)
 Strand=Plus/Plus

Query  112  ATGGCATCAGAGATCAAAGCAAAGATCAAT---GGACTAGAATGCTTTAATACATGTACG  168
            |||||||||||||||||||||| |||||||   || ||||||||||||||||||||||||
Sbjct  1    ATGGCATCAGAGATCAAAGCAAGGATCAATGGCGGCCTAGAATGCTTTAATACATGTACG  60

Query  169  CCTTATTATGATGATTATAAATGCAATGTGGACTGCCTATCATCGGGCTACCCGGCAGGA  228
            ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct  61   CCTTATTATGATGATTATAAATGCAATGTGGACTGTCTATCATCGGGGTACCCGGCAGGA  120

Query  229  GATTGTCATA-TCGTGTCTCCTTCTCAACCTAAAAAATGTTGTTGTTATTAA  279
            |||||||||  | |||||||||||||||||||||||||||||||||||||||
Sbjct  121  GATTGTCATGCT-GTGTCTCCTTCTCAACCTAAAAAATGTTGTTGTTATTAA  171



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 14079412341


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5