BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G33250.1
Length=955
Score E
Sequences producing significant alignments: (Bits) Value
Ahg901143 jgi|Araly1|901143|Al_scaffold_0004_1793 1164 0.0
> Ahg901143 jgi|Araly1|901143|Al_scaffold_0004_1793
Length=861
Score = 1164 bits (630), Expect = 0.0
Identities = 804/883 (91%), Gaps = 31/883 (4%)
Strand=Plus/Plus
Query 23 ATGGCGGATAGAGGAGCTCTTTCGTTACCGCGAGCTTCTACTTA-TCTTAGTTTCTCAAA 81
|||||||||||||||||||||| ||||||||||||||||| | | |||||||||||||||
Sbjct 1 ATGGCGGATAGAGGAGCTCTTTTGTTACCGCGAGCTTCTA-TCATTCTTAGTTTCTCAAA 59
Query 82 CCTCCATGTCTGGCGATTCCACAACCCTAGATCTTATCCTC-CCTCTCGTTCTCAA-CTC 139
||||||||||||||||||||| |||||||||||||||| || || |||||||| || ||
Sbjct 60 CCTCCATGTCTGGCGATTCCAAAACCCTAGATCTTATCTTCTCC-CTCGTTCT-AATCTT 117
Query 140 CTCTGTTTCTCTTCCTCATGCTCTAGAGTAACTTCGGCGAAGATAATTCAGCTGAACCGC 199
|||||||||||||| ||| ||||||||||| |||||||| |||||||||||||||| |||
Sbjct 118 CTCTGTTTCTCTTCTTCACGCTCTAGAGTAGCTTCGGCGGAGATAATTCAGCTGAATCGC 177
Query 200 CGGAGATTCAGCTATAAAATATGCGCCGCCGCTGATGACGGTAGGGGATACCGTTTGACG 259
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 178 CGGAGATTCAGCTATAAAATATGCGCCGCCGCGGATGACGGTAGGGGATACCGTTTGACA 237
Query 260 GAAA-GGGGAAAAAGGGGAAGGAAGCGGCGGGAGCTATGGGAAGAACTTTTTGAAGATAA 318
|||| |||||||| |||||| ||| ||||||||||| ||||| ||||| |||||||||||
Sbjct 238 GAAAGGGGGAAAAGGGGGAA-GAAACGGCGGGAGCTTTGGGAGGAACTCTTTGAAGATAA 296
Query 319 TGTTGAAGACGATGATGATGAAGATGATGGTGGTGGTGGAATTGGTAGTGCTAATTTTGA 378
|||||||||| || ||| || || | || ||| |||| | | |||||||||
Sbjct 297 TGTTGAAGAC---GACGAT---GACGA---T-GT--TGG---TGGT-G-G-TAATTTTGA 338
Query 379 CCTGTGGAAGATCTTAGAGGAAATTGTAGATAATGTTTGGATTTTAAAGGCATTCAAATC 438
|||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| |||
Sbjct 339 CCTGTGGAAGATTTTAGAGGAAATTGTAGATAATGTCTGGATTTTAAAGGCATTCAGATC 398
Query 439 GTATGGATATCTCCTCCCATTCATCATCTTATCGCTTTTCTTCAGCACCGGACCCAAAGC 498
||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 399 GTATGGATATCTCCTGCCGTTCATCATCTTATCGCTTTTCTTCAGCACCGGACCCAAAGC 458
Query 499 TTTCCTCGTGTCACTAGCCGTAGCAATCGGGCCATCATTGTTATTTTATGCGTTCCAGAA 558
||||||||||||||| ||||||| |||| |||||||||||| ||||| || ||||||||
Sbjct 459 CTTCCTCGTGTCACTATCCGTAGCCATCGTGCCATCATTGTTGTTTTACGCATTCCAGAA 518
Query 559 GTTGATTGGTTGGGATAAACGCAGAGGTACATCAATAGCAAATCAATTCGGGATagagga 618
||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 519 GTTGATTGGTTGGGATAAACGCAGAAAAACATCGATAGCAAATCAATTCGGGATAGAGGA 578
Query 619 agaagaagaagaagtggagagaagTAGTAGCAGGATTCGATACAACCCATCAACCGTTAG 678
|||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 579 AGAAGAAGAAGAAGTGGAGAGAAGAAGGAGCAGGATTCGATACAACCCATCAACCGTTAG 638
Query 679 AAACAATGTCAATGGCCGTGGAGTTAACCGTAGTTCAGCTGGAATGGCTTCTAAGTTTGG 738
|||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 639 AAACAATGCCAATGGCCGCAGAGTTAACCGTAGTTCAGCTGGAATGGCTTCTAAGTTTGG 698
Query 739 TGGGTGGGACGAGTTAGACGGGCTTGGTACCACCATTCCCGAACGGCCAACaagcgaacc 798
|||||||||||||||||||||||| ||||||| ||||||||| |||||||||||||||
Sbjct 699 TGGGTGGGACGAGTTAGACGGGCTAGGTACCA---TTCCCGAACAGCCAACAAGCGAACC 755
Query 799 gaagaagaaaccgttaccgaagaggaagagagtaagaagaga-aaaggcagcagaaCCAT 857
|||||||||||||||| | ||||||||||||||||||||||| |||| |||||||||||
Sbjct 756 GAAGAAGAAACCGTTAACAAAGAGGAAGAGAGTAAGAAGAGAGAAAG-CAGCAGAACCAC 814
Query 858 TATTGTTGAGATTGTTGGTGTCTTTGTTTCCATTCTTAAGCAC 900
||||||||||||| |||||||| |||||||| |||||||||||
Sbjct 815 TATTGTTGAGATTATTGGTGTCCTTGTTTCCTTTCTTAAGCAC 857
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35454312810
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5