BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G33255.1
Length=990
Score E
Sequences producing significant alignments: (Bits) Value
Ahg321055 jgi|Araly1|321055|fgenesh1_pm.C_scaffold_4001112 1225 0.0
> Ahg321055 jgi|Araly1|321055|fgenesh1_pm.C_scaffold_4001112
Length=738
Score = 1225 bits (663), Expect = 0.0
Identities = 713/738 (97%), Gaps = 0/738 (0%)
Strand=Plus/Plus
Query 18 ATGACTTTCCTCTTATCAAGAACATTTATTTCTCTCACTCTCAGACCTTCTTGTTCGATT 77
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGACTTTCCTCTTATCAAGAACATTTATTTCTCTCACTCTCAGACCTTCTTGTTCGATT 60
Query 78 TCCATGGCGAATTTAACGACGAACGCTAAAACTCGCCTGAGAGGTGTTGTATTCGATATG 137
|||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||
Sbjct 61 TCCATGGCGAATTTAACGACGAACGCTAAATCTCGCCTGAGAGGCGTTGTATTCGATATG 120
Query 138 GACGGAACCCTGACTGTTCCGGTCATCGATTTCGCCGCAATGTATAGAGCTGTTCTTGGT 197
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GACGGAACCCTAACTGTTCCGGTCATCGATTTCGCCGCAATGTATAGAGCTGTTCTTGGT 180
Query 198 GAAGATGCTTACAAGCGAATCAAAGCAGAGAGCCCTAGTGGGATTGATATTCTGCATCAT 257
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 181 GAAGATGCTTACAAGCGAATCAAAGCAGAGAGTCCTAGTGGGATTGATATTCTGCACCAT 240
Query 258 ATTGAGTCGTGGAGTCCTGATAAACAGCAGAAGGCGTATGAAATCATTGCTGATTATGAG 317
|| ||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 241 ATCGAGTCGTGGAGTCCTGATAAACAGCAGAAAGCGTATGAAATCATTGCCGATTATGAG 300
Query 318 AAACAAGGAATAGATAAGCTTCAAATCATGCCTGGTACTGCTGAACTATGTGGCTTCCTT 377
||||| |||||||||||||| ||||||||||||||| ||||||||||||||||||| |||
Sbjct 301 AAACAGGGAATAGATAAGCTCCAAATCATGCCTGGTGCTGCTGAACTATGTGGCTTTCTT 360
Query 378 GATTCCAAAAAGATAAAGAGGGGGCTAATTACACGCAATGTTCAAAAGGCAATCGACATC 437
|||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 361 GATTCCAAAAAGATAAAGAGAGGGCTAATTACACGCAATGTTCAGAAGGCAATCGACATA 420
Query 438 TTCCATCAACGTTTTGAGGTTATCTTTTCTCCAGCACTAGGCAGAGAGTTTCGTCCATAT 497
||||| ||||||||||||||||||||||| ||||| ||||| ||||||||||||||||||
Sbjct 421 TTCCACCAACGTTTTGAGGTTATCTTTTCACCAGCCCTAGGTAGAGAGTTTCGTCCATAT 480
Query 498 AAACCAAACCCAGACCCGCTGTTGCATATATGTTCTACATGGGACATCCAACCTAATGAA 557
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 AAACCAAACCCAGACCCGCTGTTGCATATATGTTCTACATGGGACATCCAACCTAATGAA 540
Query 558 GTCATGATGGTTGGTGACAGCTTAAAAGATGATATAGCATGTGGGAAACGAGCTGGAGCC 617
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 GTTATGATGGTTGGTGACAGCTTAAAAGATGATATAGCATGTGGGAAACGAGCTGGAGCC 600
Query 618 TTCACTTGCTTGCTAGATGAAACCGGAAGGTATGGACCAGACGATTTTTCTGTTTCCGGT 677
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 601 TTCACTTGCTTGCTAGATGAGCCCGGAAGGTATGGACCAGACGATTTTTCTGTTTCCGGT 660
Query 678 CTGCAACCTGATTTTAAGGTTGATTCCTTGTCCAAAATCCAGAACCTATTGGAGACGAAC 737
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 661 CTGCAACCTGATTTTAAGGTTGATTCCTTGTCCAAAATTCAGAACCTATTGGAGACGAAT 720
Query 738 TTCGACCTGAACCCGTAG 755
|||||||||||||| |||
Sbjct 721 TTCGACCTGAACCCATAG 738
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36788614905
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5