BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G33260.1
Length=1311
Score E
Sequences producing significant alignments: (Bits) Value
Ahg901145 jgi|Araly1|901145|Al_scaffold_0004_1795 2139 0.0
> Ahg901145 jgi|Araly1|901145|Al_scaffold_0004_1795
Length=1317
Score = 2139 bits (1158), Expect = 0.0
Identities = 1259/1309 (96%), Gaps = 2/1309 (0%)
Strand=Plus/Plus
Query 4 GATGATTTGGAGATTACCCACGAAACGAAGAAGGGAAAGAGTTTTTGGGCTGCCGTTAGT 63
||||||||||||||||| || |||||||||||| ||||||||| |||||||||||||||
Sbjct 10 GATGATTTGGAGATTACACATGAAACGAAGAAGCAAAAGAGTTTCTGGGCTGCCGTTAGT 69
Query 64 TTGATCATCGGAACAGCCGTTGGTCCAGGAATGCTCGGCCTCCCAGCTGCAACTATCAGA 123
|||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 70 TTGATCATCGGAACCGCCGTTGGTCCCGGAATGCTCGGCCTCCCAGCTGCAACTATCAGA 129
Query 124 TCTGGTTCTATCCCATCGACCATTGCTTTACTTTGTTCTTGGGTTTACGTCATTTCCTCT 183
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 130 TCTGGTTCAATCCCATCGACCATTGCTTTACTTTGTTCTTGGGTTTACGTCATTTCCTCT 189
Query 184 ATTCTTCTCGTGGCTGAGCTCAGCTTTGCAGCAATGGAAGAAGACAATGCAGCAGAGGTT 243
||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 190 ATTCTTCTCGTGGCTGAGCTCAGCTTTGCTGCTATGGAAGAAGACAATGCAGCAGAGGTT 249
Query 244 AGTTTCACAGGACTTGCAACTAAATCCTTTGGGAACAAATTTGGAGTTTTCGTGGCTTTT 303
|| |||||||| ||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 250 AGCTTCACAGGGCTTGCAACTAAATCCTTTGGGAATAAATTTGGAGTTTTTGTGGCTTTT 309
Query 304 GTGTATGCTTCACTAAGTTTCTCTTTGATGGTTGCTTGTGTCTCGGGTATTGGCTCCATT 363
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 310 GTGTATGCTTCACTGAGTTTCTCTTTGATGGTTGCTTGTGTCTCGGGTATTGGCTCCATT 369
Query 364 GTGTCTCAATGGTTTCCTTCA-ATGAATCCATTTTTGGCCAATGCTATATTCCCTCTAGT 422
||||||||||||||||||| | ||||||||| | ||||||||||||||||| ||||||||
Sbjct 370 GTGTCTCAATGGTTTCCTT-ACATGAATCCACTCTTGGCCAATGCTATATTTCCTCTAGT 428
Query 423 TTCCGGAATCTTGATCGGGTTTTTCCCTTTCAATGCCATTGATTTCACCAACAGGGGTCT 482
||| ||| ||||||| ||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 429 TTCTGGAGTCTTGATTGGGTTTTTCCCTTTCGATGCCATTGATTTCACCAACAGGGGTCT 488
Query 483 CTGCTTCCTCATGCTCTTCTCTATAACTTCACTTGTGGCCATTGGTTTATCTGTGGCTAG 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 489 CTGCTTCCTCATGCTCTTCTCTATAACTTCACTTGTGGCCATTGGTTTATCTGTGGCTAG 548
Query 543 GTCCAATGTGTTAGCCTCATTTGGTCAATCATGTTGGAAAGTCTCCATGGTTTTACCCGC 602
||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct 549 GTCCAATGTGTTAGCCTCATTTGGTCAATCATGTTGGAAAGTCTCGACGGTTTTACCCGC 608
Query 603 GGTTCCTGTTATGGTACTGACACTAGGGTTTCATGTGATCACGCCTTTCATATGCAATCT 662
|||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 609 GGTTCCTGTTATGGTACTGACACTAGGGTTTCATGTCATCACTCCTTTCATATGCAATCT 668
Query 663 CGCTGGGGATTCGGTTTCAGATGCTCGGAGAGCCATTCTTGTAGGCGGTGTTGTGCCATT 722
||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 669 CGCAGGGGATTCGGTTTCAGATGCTCGGAGAGCCATTCTTGTTGGCGGTGTTGTGCCATT 728
Query 723 GGCTATGGTGTTGTCTTGGAATCTAATTGTTTTGGGGCTTGCAAGAATCACTGTGCCTGC 782
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 729 GGCTATGGTGTTGTCTTGGAATCTAATTGTTTTGGGGCTTGCAAAAATCACTGTGCCTGC 788
Query 783 TGCACCTTCTTCAACCATTGACCCAATCTCTCTTCTTCTATCTGTGAATCCTTCTGCCTT 842
|| |||||||||| |||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 789 TGTACCTTCTTCATCCATTGACCCAATCTCTCTTCTTCTATCTGTGAACCCTTCTGCTTT 848
Query 843 ATCTGCTGTTCAAGGCTTTGCTTTCTCAGCCTTAGCTACCAGTTTAATCGGATATGCTGT 902
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 849 ATCTGCTGTTCAAGGCTTTGCTTTCTCAGCCTTAGCTACCAGTTTAATCGGATACGCTGT 908
Query 903 TAGCTTCCCGAAACAGCTCCTCGACACATGGAAGCTTGTGTCTAAGCAATCAAATGGAAA 962
|||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct 909 TAGCTTCCCGAAACAGCTCCTCGATACATGGAAGCTTGTGTCTAAGAAATCAAATGGAAA 968
Query 963 TGGAAGACTTGGGTCTGTAAGTTTCTCATCAAAAGAGCGTGATAGGAGAACTAATGGGAG 1022
|||||||||||||||||||||||||||||| |||||| || ||| |||||||||||||||
Sbjct 969 TGGAAGACTTGGGTCTGTAAGTTTCTCATCGAAAGAGGGTAATAAGAGAACTAATGGGAG 1028
Query 1023 AGCCTCATACAATGAACCAGCAAGAGCTCGTGATGGGTTTGAAGCAGTAGTGATGCTATT 1082
||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1029 AGCCTCATACAGTGAACCACCAAGAGCTCGTGATGGGTTTGAAGCAGTAGTGATGCTATT 1088
Query 1083 TGTCCTTGGAGTTCCAGCTCTAATTGCAACATTCTTTCCCTCAACGTTCTCGAGAGCTCT 1142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1089 TGTCCTTGGAGTTCCAGCTCTAATTGCAACATTCTTTCCCTCAACGTTCTCGAGAGCTCT 1148
Query 1143 GGATTTTGCCGGTGTTTATGCAAACTGTTTCCTCTTTGGTGTCCTGCCTCCTGCAATGGC 1202
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1149 GGATTTTGCTGGTGTTTATGCAAACTGTTTCCTCTTTGGTGTCCTGCCTCCTGCAATGGC 1208
Query 1203 TTATATTCAACAGTCCAGAAAGAAGCTCAGGCCATGGGTTCTTCCCGGAGGCAACTTTAC 1262
||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||
Sbjct 1209 TTATATTCAACAGTCCAGAAACAAGCTCAGGTCATGGGTTCTTCCCGGAGGCAACTTTAC 1268
Query 1263 CTTGTTGATCTTATTTGCAATCGCCATTATTCTGGGAATATGGCATTAG 1311
||||||||||||||| | ||||||||||||||||||||||||||||||
Sbjct 1269 CTTGTTGATCTTATTCGTTATCGCCATTATTCTGGGAATATGGCATTAG 1317
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49026071262
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5