BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G33260.1 Length=1311 Score E Sequences producing significant alignments: (Bits) Value Ahg901145 jgi|Araly1|901145|Al_scaffold_0004_1795 2139 0.0 > Ahg901145 jgi|Araly1|901145|Al_scaffold_0004_1795 Length=1317 Score = 2139 bits (1158), Expect = 0.0 Identities = 1259/1309 (96%), Gaps = 2/1309 (0%) Strand=Plus/Plus Query 4 GATGATTTGGAGATTACCCACGAAACGAAGAAGGGAAAGAGTTTTTGGGCTGCCGTTAGT 63 ||||||||||||||||| || |||||||||||| ||||||||| ||||||||||||||| Sbjct 10 GATGATTTGGAGATTACACATGAAACGAAGAAGCAAAAGAGTTTCTGGGCTGCCGTTAGT 69 Query 64 TTGATCATCGGAACAGCCGTTGGTCCAGGAATGCTCGGCCTCCCAGCTGCAACTATCAGA 123 |||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 70 TTGATCATCGGAACCGCCGTTGGTCCCGGAATGCTCGGCCTCCCAGCTGCAACTATCAGA 129 Query 124 TCTGGTTCTATCCCATCGACCATTGCTTTACTTTGTTCTTGGGTTTACGTCATTTCCTCT 183 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 130 TCTGGTTCAATCCCATCGACCATTGCTTTACTTTGTTCTTGGGTTTACGTCATTTCCTCT 189 Query 184 ATTCTTCTCGTGGCTGAGCTCAGCTTTGCAGCAATGGAAGAAGACAATGCAGCAGAGGTT 243 ||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||| Sbjct 190 ATTCTTCTCGTGGCTGAGCTCAGCTTTGCTGCTATGGAAGAAGACAATGCAGCAGAGGTT 249 Query 244 AGTTTCACAGGACTTGCAACTAAATCCTTTGGGAACAAATTTGGAGTTTTCGTGGCTTTT 303 || |||||||| ||||||||||||||||||||||| |||||||||||||| ||||||||| Sbjct 250 AGCTTCACAGGGCTTGCAACTAAATCCTTTGGGAATAAATTTGGAGTTTTTGTGGCTTTT 309 Query 304 GTGTATGCTTCACTAAGTTTCTCTTTGATGGTTGCTTGTGTCTCGGGTATTGGCTCCATT 363 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 310 GTGTATGCTTCACTGAGTTTCTCTTTGATGGTTGCTTGTGTCTCGGGTATTGGCTCCATT 369 Query 364 GTGTCTCAATGGTTTCCTTCA-ATGAATCCATTTTTGGCCAATGCTATATTCCCTCTAGT 422 ||||||||||||||||||| | ||||||||| | ||||||||||||||||| |||||||| Sbjct 370 GTGTCTCAATGGTTTCCTT-ACATGAATCCACTCTTGGCCAATGCTATATTTCCTCTAGT 428 Query 423 TTCCGGAATCTTGATCGGGTTTTTCCCTTTCAATGCCATTGATTTCACCAACAGGGGTCT 482 ||| ||| ||||||| ||||||||||||||| |||||||||||||||||||||||||||| Sbjct 429 TTCTGGAGTCTTGATTGGGTTTTTCCCTTTCGATGCCATTGATTTCACCAACAGGGGTCT 488 Query 483 CTGCTTCCTCATGCTCTTCTCTATAACTTCACTTGTGGCCATTGGTTTATCTGTGGCTAG 542 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 489 CTGCTTCCTCATGCTCTTCTCTATAACTTCACTTGTGGCCATTGGTTTATCTGTGGCTAG 548 Query 543 GTCCAATGTGTTAGCCTCATTTGGTCAATCATGTTGGAAAGTCTCCATGGTTTTACCCGC 602 ||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||| Sbjct 549 GTCCAATGTGTTAGCCTCATTTGGTCAATCATGTTGGAAAGTCTCGACGGTTTTACCCGC 608 Query 603 GGTTCCTGTTATGGTACTGACACTAGGGTTTCATGTGATCACGCCTTTCATATGCAATCT 662 |||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| Sbjct 609 GGTTCCTGTTATGGTACTGACACTAGGGTTTCATGTCATCACTCCTTTCATATGCAATCT 668 Query 663 CGCTGGGGATTCGGTTTCAGATGCTCGGAGAGCCATTCTTGTAGGCGGTGTTGTGCCATT 722 ||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 669 CGCAGGGGATTCGGTTTCAGATGCTCGGAGAGCCATTCTTGTTGGCGGTGTTGTGCCATT 728 Query 723 GGCTATGGTGTTGTCTTGGAATCTAATTGTTTTGGGGCTTGCAAGAATCACTGTGCCTGC 782 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 729 GGCTATGGTGTTGTCTTGGAATCTAATTGTTTTGGGGCTTGCAAAAATCACTGTGCCTGC 788 Query 783 TGCACCTTCTTCAACCATTGACCCAATCTCTCTTCTTCTATCTGTGAATCCTTCTGCCTT 842 || |||||||||| |||||||||||||||||||||||||||||||||| |||||||| || Sbjct 789 TGTACCTTCTTCATCCATTGACCCAATCTCTCTTCTTCTATCTGTGAACCCTTCTGCTTT 848 Query 843 ATCTGCTGTTCAAGGCTTTGCTTTCTCAGCCTTAGCTACCAGTTTAATCGGATATGCTGT 902 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 849 ATCTGCTGTTCAAGGCTTTGCTTTCTCAGCCTTAGCTACCAGTTTAATCGGATACGCTGT 908 Query 903 TAGCTTCCCGAAACAGCTCCTCGACACATGGAAGCTTGTGTCTAAGCAATCAAATGGAAA 962 |||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 909 TAGCTTCCCGAAACAGCTCCTCGATACATGGAAGCTTGTGTCTAAGAAATCAAATGGAAA 968 Query 963 TGGAAGACTTGGGTCTGTAAGTTTCTCATCAAAAGAGCGTGATAGGAGAACTAATGGGAG 1022 |||||||||||||||||||||||||||||| |||||| || ||| ||||||||||||||| Sbjct 969 TGGAAGACTTGGGTCTGTAAGTTTCTCATCGAAAGAGGGTAATAAGAGAACTAATGGGAG 1028 Query 1023 AGCCTCATACAATGAACCAGCAAGAGCTCGTGATGGGTTTGAAGCAGTAGTGATGCTATT 1082 ||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 1029 AGCCTCATACAGTGAACCACCAAGAGCTCGTGATGGGTTTGAAGCAGTAGTGATGCTATT 1088 Query 1083 TGTCCTTGGAGTTCCAGCTCTAATTGCAACATTCTTTCCCTCAACGTTCTCGAGAGCTCT 1142 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1089 TGTCCTTGGAGTTCCAGCTCTAATTGCAACATTCTTTCCCTCAACGTTCTCGAGAGCTCT 1148 Query 1143 GGATTTTGCCGGTGTTTATGCAAACTGTTTCCTCTTTGGTGTCCTGCCTCCTGCAATGGC 1202 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1149 GGATTTTGCTGGTGTTTATGCAAACTGTTTCCTCTTTGGTGTCCTGCCTCCTGCAATGGC 1208 Query 1203 TTATATTCAACAGTCCAGAAAGAAGCTCAGGCCATGGGTTCTTCCCGGAGGCAACTTTAC 1262 ||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||| Sbjct 1209 TTATATTCAACAGTCCAGAAACAAGCTCAGGTCATGGGTTCTTCCCGGAGGCAACTTTAC 1268 Query 1263 CTTGTTGATCTTATTTGCAATCGCCATTATTCTGGGAATATGGCATTAG 1311 ||||||||||||||| | |||||||||||||||||||||||||||||| Sbjct 1269 CTTGTTGATCTTATTCGTTATCGCCATTATTCTGGGAATATGGCATTAG 1317 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 49026071262 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5