BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G33270.1
Length=960
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482264 jgi|Araly1|482264|fgenesh2_kg.4__1324__AT2G33270.1 1343 0.0
> Ahg482264 jgi|Araly1|482264|fgenesh2_kg.4__1324__AT2G33270.1
Length=941
Score = 1343 bits (727), Expect = 0.0
Identities = 877/947 (93%), Gaps = 19/947 (2%)
Strand=Plus/Plus
Query 1 GCTTTCGAGGGTGGGGAGAGAGTAGAAGAGAAATATCAAATTTCCCTTCAAAAGCCTCTC 60
||||| |||||| |||||||||||||||||||||||||||||||||||||||| |
Sbjct 1 GCTTTTGAGGGTTGGGAGAGAGTAGAAGAGAAATATCAAATTTCCCTTCAAAA---AAAC 57
Query 61 CTCTCTTTGTTCAAGtttttttCCTTGGATGT-GCATGTTTCTTGTGGAACAAGGCAGTT 119
| ||| ||||| |||||| ||||||||| |||||||| |||||||||||||||||
Sbjct 58 C-CTC-----TCAAG-TTTTTT-CTTGGATGTCACATGTTTCATGTGGAACAAGGCAGTT 109
Query 120 CTGTTTTTAAGTAAAATTCATGGCGACGGATTCGTTCATCAAGTTAAATCCAATTTCCTT 179
|||||||||||||||| |||||||||| |||||||||||||||||||||||||||||| |
Sbjct 110 CTGTTTTTAAGTAAAAGTCATGGCGACAGATTCGTTCATCAAGTTAAATCCAATTTCCAT 169
Query 180 TAACCGTGCCCGCTTCGACCTCCGAGATTTTGCTGGCATAAGTCCTAAAAGCATCTCTTC 239
||||||| |||||||| ||||| |||| ||||||||||||||||||||||||||||||||
Sbjct 170 TAACCGTCCCCGCTTCAACCTCAGAGAGTTTGCTGGCATAAGTCCTAAAAGCATCTCTTC 229
Query 240 TCTGTGTTGCATTAGCCCAAGATTGATATCTTGCAACCATTTCAGCCCGAGAACATTGAT 299
| |||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 230 TTTGTGCTGCATTAGCCCAAGAATGATATCTTGCAACCATTTCAGCCCGAGAACATTGAT 289
Query 300 ATCCGGCGAGAATGGTAACATATTGTTTTCCAAGAAAAAGATCCCCGCGTTTGTCCGATG 359
||||||||||||| || |||||||||| |||||||||||||||||||||||||||||||
Sbjct 290 CTCCGGCGAGAATGATATCATATTGTTTCCCAAGAAAAAGATCCCCGCGTTTGTCCGATG 349
Query 360 TCAGACAAGTCTTGGGATCGGAAGGAACCAAAAATGGTGGGAGAAGGAATTGAAACCGAA 419
|||||||||||||||||| |||||||||||||||||||||||||||||| || |||||||
Sbjct 350 TCAGACAAGTCTTGGGATTGGAAGGAACCAAAAATGGTGGGAGAAGGAACTGCAACCGAA 409
Query 420 CATGAAGTCGGTTACATCACCGCAAGATCTTGTC-GTCTCTTTACGTAACGCTGGAGATA 478
|||||||||||| ||||||||| ||||||||||| || |||||||||||||| |||||||
Sbjct 410 CATGAAGTCGGTGACATCACCGGAAGATCTTGTCGGT-TCTTTACGTAACGCCGGAGATA 468
Query 479 AACTTGTCGTTGTTGATTTCTTCTCGCCTAGTTGTGGTGGCTGCAAAGCTCTTCATCCCA 538
||||| ||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 469 AACTTTTCGTTGTGGATTTCTTCTCACCTAGCTGTGGTGGCTGCAAAGCTCTTCATCCCA 528
Query 539 AGATATGTAAAATTGCAGAGAAGAATCCGGAAGTAGAGTTTCTACAAGTGAATTATGAAG 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 529 AGATATGTAAAATTGCAGAGAAGAATCCGGAAGTAGAGTTTCTACAAGTGAATTATGAAG 588
Query 599 AACATAGAAGTTTATGTCAAAGTCTTAACATTCATGTTCTTCCCTTCTTCCGCTTCTATC 658
| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
Sbjct 589 ACCATAGAAGTTTATGTCAAAGTCTTAACGTTCATGTTCTTCCCTTCTTCCGCTTCTACC 648
Query 659 GTGGTTCCTCTGGCCGCGTTTGCAGCTTCAGTTGTACTAATGCCACGATAAGGAAATTCA 718
| |||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 649 GCGGTTCCTCAGGCCGCGTTTGCAGCTTCAGTTGTACTAATGCCACGATAAAGAAATTCA 708
Query 719 AGGAAGCGTTGGAGAAGCATGGGAGGGAGCAATGTAGCATTGGAGAAACAAAGGGGCTTG 778
|||| || || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 709 AGGAGGCATTAGAGAAGCATGGGAGGGAGCAATGTAGCATTGGAGAAACAAAGGGGCTTG 768
Query 779 AGGAGAAAGAACTTGTCGCCATGGCTGCAAATAAAGACTTGTCATTCGATTATAAACCCA 838
|||||||||||||||||||||||||||||||||||||| | || |||||||||||| |||
Sbjct 769 AGGAGAAAGAACTTGTCGCCATGGCTGCAAATAAAGACCTATCGTTCGATTATAAATCCA 828
Query 839 CATCG-TGTGGAAATATCCAAGAGCaaaaa-aaGAAAGAAATATTTCTCCCGAAATCTCC 896
|||| | |||||||| ||||||||||||| || ||||| ||||||||||| ||||||||
Sbjct 829 AATCGAT-TGGAAATAGCCAAGAGCAAAAAGAA-AAAGATATATTTCTCCCAAAATCTCC 886
Query 897 AACTTTTAATAAACAAAAAGAAGTAGAACATTCTCTACTACT-AGTT 942
||||| ||||||||||||||||||||||||||||||||| | ||||
Sbjct 887 AACTTCGAATAAACAAAAAGAAGTAGAACATTCTCTACTAGTTAGTT 933
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35644927395
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5