BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G33280.1 Length=1227 Score E Sequences producing significant alignments: (Bits) Value Ahg321057 jgi|Araly1|321057|fgenesh1_pm.C_scaffold_4001114 1796 0.0 > Ahg321057 jgi|Araly1|321057|fgenesh1_pm.C_scaffold_4001114 Length=1227 Score = 1796 bits (972), Expect = 0.0 Identities = 1145/1230 (93%), Gaps = 6/1230 (0%) Strand=Plus/Plus Query 1 ATGGTTGCTAAGCCTCTCTATGGAGTTCTCTCTGATGTTCTTTATATTGGCGGTGCTCGT 60 ||||| ||||||||||||||||||||||||||||||||||| || ||||| ||||||||| Sbjct 1 ATGGTGGCTAAGCCTCTCTATGGAGTTCTCTCTGATGTTCTCTACATTGGTGGTGCTCGT 60 Query 61 AGAGTTCCTTACATCTCCGTTGGAGTGCTTTTGCA-GGGTCTAGCATGGGGTTCGTTGGC 119 |||||||||||||||||| |||||||||||||||| |||| ||||||||||||| ||||| Sbjct 61 AGAGTTCCTTACATCTCCATTGGAGTGCTTTTGCAGGGGT-TAGCATGGGGTTCATTGGC 119 Query 120 GATATTCCCTGGTGCTAGAGAAGTTCTTCCTTCACTTATGGCATTTATTCTGCTTAGTAA 179 ||||||||| |||||| |||||||||||||||||||||||| |||| |||| |||||||| Sbjct 120 GATATTCCCGGGTGCTCGAGAAGTTCTTCCTTCACTTATGGTATTTGTTCTTCTTAGTAA 179 Query 180 CCTTGGAGCATCCATTACTGAAGTTTCTCAAGACGCTCTTGTTGCGGAATACGGTTTAAG 239 ||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 180 CCTTGGAGCTTCCATTACTGAAGTTTCTAAAGACGCTCTTGTTGCGGAATACGGTTTAAG 239 Query 240 ATATCAGATAAATGGTCTTCAGTCTTATGCACTTATGGCTTCAGCAGTTGGAGGAATCCT 299 ||||||||| |||||||||||||||||||| ||||||||||| || |||||||| ||||| Sbjct 240 ATATCAGATGAATGGTCTTCAGTCTTATGCGCTTATGGCTTCCGCGGTTGGAGGGATCCT 299 Query 300 TGGGAACTTACTCGGTGGATATTGCTTACTCAAGACACCTCCTAGAATCTTGTTTCTTGC 359 ||| ||||||||||||||||||| |||||||||||||||||||||| ||||||||||||| Sbjct 300 TGGAAACTTACTCGGTGGATATTTCTTACTCAAGACACCTCCTAGAGTCTTGTTTCTTGC 359 Query 360 TTTTACAGCTTTGTTATCTCTTCAGCTCATTGTTTCTTTATCTTCTAAAGAAGAATCTGT 419 ||||||||| ||||| || |||||||||||||||||| |||| ||||||||||||||||| Sbjct 360 TTTTACAGCGTTGTTGTCACTTCAGCTCATTGTTTCTCTATCCTCTAAAGAAGAATCTGT 419 Query 420 TAACTTGCCACGGATCGGAGAAGTAACTCCAGAGATAAGCTCTGTTTTGGGGATCGTAAA 479 ||||||||||| |||| ||| |||||||||||||||||||||||||||||||| ||||| Sbjct 420 TAACTTGCCACCGATCAAAGAGGTAACTCCAGAGATAAGCTCTGTTTTGGGGATTGTAAA 479 Query 480 GAAACAGTTTTTGGATCTTAAGGGAATTGTTCAGGTAGATGAAATCTCCCAGCCTTTGAT 539 |||||||||| ||||||||| || ||||||||||||||||||||||||||||||||| | Sbjct 480 GAAACAGTTTCTGGATCTTATGGTAATTGTTCAGGTAGATGAAATCTCCCAGCCTTTAAC 539 Query 540 TTGGATAGTATCTTCCATTGCATTGGTCCCTCTTCTCTCAGGATCAGTCTTCTGCTACCA 599 |||||||||| ||||||||||| |||||||||||||||| |||||||||||| ||||||| Sbjct 540 TTGGATAGTAGCTTCCATTGCAATGGTCCCTCTTCTCTCTGGATCAGTCTTCGGCTACCA 599 Query 600 AACTCAAGTTCTAAACCTTGATCCTTCAGTTATTGGTATGTCAAAGGTTATTGGACAGTT 659 |||||||||||||||||| |||||||| |||||||| ||||||||||||||||||||||| Sbjct 600 AACTCAAGTTCTAAACCTCGATCCTTCGGTTATTGGAATGTCAAAGGTTATTGGACAGTT 659 Query 660 GATGCTTCTCTGTTTAACTGTTGTTTATGATCGTTACTGGAAGAAACTTCCCATGAGGGC 719 |||||||||||||||||| || |||||||| || |||||||||| ||||||||||||| | Sbjct 660 GATGCTTCTCTGTTTAACCGTGGTTTATGACCGCTACTGGAAGACACTTCCCATGAGGCC 719 Query 720 GTTGATCCATATCGTGCAACTCCTGTACGCGTTTTCATTACTGTTTGATTATATCTTGGT 779 ||||||||||||||||||||||| ||||| ||||| ||||| || |||||||||||||| Sbjct 720 ATTGATCCATATCGTGCAACTCCTCTACGCCTTTTCGTTACTCTTCGATTATATCTTGGT 779 Query 780 GAAGCAAATAAATCTCGCGTTCGGGATCTCAAACACGGCTTTTGTGCTCTGTT-TCTCTA 838 ||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| Sbjct 780 GAAGCAAATAAATCTCGCGTTCGGGATCTCAAACACGGCTTTTGTGCTCTGTTGT-TCTA 838 Query 839 GTGTAGCGGAAATTCTTGCACAGTTCAAGATTCTTCCTTTCTCTGTTTTGCTAGCAAATA 898 ||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||| | Sbjct 839 GTGTAGCAGAAATTCTTTCACAGTTCAAGATTCTTCCTTTCTCTGTTTTGCTAGCAAACA 898 Query 899 TGTGCCCTGGAGGCTGTGAAGGATCAATCACTTCTTTCCTTGCTTCTACTCTGTGTTTGT 958 |||||| |||||||| |||||||| || || || ||||||||||| ||||||||||| | Sbjct 899 AGTGCCCGGGAGGCTGCGAAGGATCCATTACCTCATTCCTTGCTTCAACTCTGTGTTTAT 958 Query 959 CATCAGTTGTAAGCGGATTCACTGGAGTTGGAATGGCTAATATGATCGGGATAACATCGA 1018 |||||||||| |||| |||| ||||||||||||||||||||||||||||||||||||||| Sbjct 959 CATCAGTTGTTAGCGCATTCGCTGGAGTTGGAATGGCTAATATGATCGGGATAACATCGA 1018 Query 1019 AGAATTACTCAAACCTGCCTGCAGGAATTCTGATACAGTCTTTGGCAGCTTTGGTGCCTT 1078 |||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 1019 AGAATTACACAAACCTGCCAGCAGGAATTCTGATACAGTCTTTGGCAGCTTTGGTGCCTT 1078 Query 1079 TGTGGTTTATTCATTATGTTCCAATGTTAGAGCCTGGTTTTGAGAGAGAAGGGAAGAGAG 1138 |||||||||| || ||||||||||||| ||||||||||||||||| |||||| ||||||| Sbjct 1079 TGTGGTTTATCCACTATGTTCCAATGTCAGAGCCTGGTTTTGAGAAAGAAGGAAAGAGAG 1138 Query 1139 CTATGAGTAAGAAAAGCAGAAGGAATAGACGTGTAGGGAGAGTCATAGGTCAGGAAAGTT 1198 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||| Sbjct 1139 CTATGAGTAAGAAAAGCAGAAGGAATAGACGAGTAGGGAGAGTCATAGGTCAGGAA-GTT 1197 Query 1199 TT-GCTTACCGGCGGGAAAGAGAAACATAA 1227 || |||||||| |||||||||||||||||| Sbjct 1198 TTTGCTTACCGTCGGGAAAGAGAAACATAA 1227 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 45823746234 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5