BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G33310.2
Length=1244
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482270 jgi|Araly1|482270|fgenesh2_kg.4__1330__AT2G33310.1 1884 0.0
> Ahg482270 jgi|Araly1|482270|fgenesh2_kg.4__1330__AT2G33310.1
Length=1356
Score = 1884 bits (1020), Expect = 0.0
Identities = 1171/1241 (94%), Gaps = 22/1241 (2%)
Strand=Plus/Plus
Query 1 AAATCctctctctgtctctttctgtttgtttgttttcttgtttcc-t-tctctctctctc 58
|||||||||||||||||| |||||||||||||||||||||||||| | ||||||||||||
Sbjct 125 AAATCCTCTCTCTGTCTCCTTCTGTTTGTTTGTTTTCTTGTTTCCTTCTCTCTCTCTCTC 184
Query 59 t-t-tctttctttgtcttcctttcccaggttgtttttttttGCTCTCTCTGCCTTCTTGA 116
| | ||||||||||||||||||||||| | | |||||||||||||||||| |||||||
Sbjct 185 TCTCTCTTTCTTTGTCTTCCTTTCCCA-G--G--TTTTTTTGCTCTCTCTGCTTTCTTGA 239
Query 117 CTTTCAAAAGACtctttctttcttttggattgattttggattctagggctctctttcttt 176
|||||||||||||||||||||||||||| |||||||||||||||||||||||| | ||||
Sbjct 240 CTTTCAAAAGACTCTTTCTTTCTTTTGGGTTGATTTTGGATTCTAGGGCTCTC-TGCTTT 298
Query 177 tagtgggtttttg---TTGTTGTTGTTG-TG-G--TCTCTCTGATGATTACTGAACTTGA 229
||||||||||||| |||||||||||| || | | | ||||||||||||||| |||||
Sbjct 299 TAGTGGGTTTTTGTTCTTGTTGTTGTTGTTGTGAAT-TTTCTGATGATTACTGAGCTTGA 357
Query 230 GATGGGGAAAGGTGAGAGTGAGCTTGAGCTTGGTCTAGGGCTGAGTCTTGGCGGTGGAAC 289
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 358 GATGGGGAAAGGTGAGAGTGAGCTTGAGCTTGGTCTAGGGCTGAGTCTCGGCGGTGGAAC 417
Query 290 GGCGGCCAAGATTGGTAAATCAGGTGGTGGTGGCGCGTGGGGAGAGCGTGGAAGGCTTTT 349
||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 418 GGCGGCCAAGAATGGTAAATCAGGTGGTGGTGGCGCGTGGGGAGAGCGTGGGAGGCTTTT 477
Query 350 GACGGCTAAGGATTTTCCTTCTGTTGGTTCTAAACGTGCTGCTGATTCTGCTTCTCATGC 409
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 478 GACGGCTAAGGATTTTCCTTCTGTTGGTTCTAAACGAGCTGCTGATTCTGCTTCTCATGC 537
Query 410 TGGTTCATCTCCTCCTCGTTCAAGCAGTCAAGTTGTTGGATGGCCTCCTATAGGGTCACA 469
|||| ||||||||||||||||||||||||||||||| |||||||||||| ||||||||||
Sbjct 538 TGGTGCATCTCCTCCTCGTTCAAGCAGTCAAGTTGTGGGATGGCCTCCTGTAGGGTCACA 597
Query 470 CAGGATGAACAGTTTGGTTAATAACCAAGCTAC-AAAGTCAGCaagagaagaagaagaag 528
|||||||||||||||||||||||||||||||| ||| || || || |||||||||||||
Sbjct 598 TAGGATGAACAGTTTGGTTAATAACCAAGCTACGAAA-TCTGCGAGGGAAGAAGAAGAAG 656
Query 529 ctggtaagaagaaagtgaaagatgatgaacctaaagatgtgacaaagaaagtgaaTGGGA 588
|||| || |||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 657 CTGGGAAAAAGAAAGTGAAAGACGATGAACCTAAAGATGTGACAAAGAAAGTGAATGGGA 716
Query 589 AAGTACAAGTTGGATTTATTAAGGTGAACATGGATGGAGTTGCTATAGGAAGAAAAGTGG 648
|||| | |||||| |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 717 AAGTGCCAGTTGGGTTTATTAAGGTGAACATGGATGGAGTTGCTATAGGAAGGAAAGTGG 776
Query 649 ATTTGAATGCTCATTCTTCTTACGAGAATTTGGCGCAAACATTGGAAGATATGTTCTTTC 708
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 777 ATTTGAATGCTCATTCTTCTTACGAGAATTTGTCGCAAACATTGGAAGATATGTTCTTTC 836
Query 709 GCACTAATCCGGGTACTGTCGGGTTAACCAGTCAGTTCACTAAACCGTTGAGGCTTTTAG 768
||||||||||||||||| |||||||||||||||||||||||||||| |||||||| ||||
Sbjct 837 GCACTAATCCGGGTACTATCGGGTTAACCAGTCAGTTCACTAAACCATTGAGGCTGTTAG 896
Query 769 ATGGATCGTCTGAGTTTGTACTTACTTATGAAGATAAGGAAGGAGATTGGATGCTTGTTG 828
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 897 ATGGATCGTCTGAGTTTGTACTTACCTATGAAGATAAGGAAGGAGATTGGATGCTTGTTG 956
Query 829 GTGATGTTCCATGGAGAATGTTCATCAACTCGGTGAAAAGGCTACGTGTGATGAAAACCT 888
| ||||||||||||||||||||||||| ||| ||||||||||| || || ||||||||||
Sbjct 957 GCGATGTTCCATGGAGAATGTTCATCACCTCAGTGAAAAGGCTTCGGGTTATGAAAACCT 1016
Query 889 CTGAAGCTAATGGACTCGCTGCACGAAATCAAGAACCAAACGAGAGACAGCGAAAGCAGC 948
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1017 CTGAAGCTAATGGACTCGCTGCACGAAATCAAGAACCAAACGAGAGACAACGAAAGCAGC 1076
Query 949 CGGTTTAGATCTCTTTTCGACGTTACGGTGTTACAGGTTTT-ATATTTTGGGGTTTTGCA 1007
|||||||| ||||||| | |||||||| ||||||||||||| | |||| || |||||||
Sbjct 1077 CGGTTTAGTTCTCTTTCCCACGTTACGCTGTTACAGGTTTTCTTTTTTTTGGTTTTTGCA 1136
Query 1008 AGTCTGAGATACTTCTGAAGCAAGCATAAGCTAGATTGATCTTATATCCAgtttgtgtat 1067
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1137 AGTCTGAGATACTTCTGAAGCAAGCATAAGCTAGATTGATCTTATATCCAGTTTGTGTAT 1196
Query 1068 tttcttggttcttataatggtttttactggttttctttagtttttttttttGCTGTCTTT 1127
||||||||||||| ||||||| |||||||||||||||||| ||||||||||||||||||
Sbjct 1197 TTTCTTGGTTCTTCTAATGGTGTTTACTGGTTTTCTTTAG-GTTTTTTTTTGCTGTCTTT 1255
Query 1128 TAATTTTCGGTTGCGATTTCACTATATACTATGGATGGAAGAGAATGCTCTTTATATCTT 1187
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1256 TAAATTTCGGTTGCGATTTCACTATATACTATGGATGGAAGAGAATGCTCTTTATATCTT 1315
Query 1188 TTACTACACTGTAAATATTTGAAGCTTATCTAATATCGTTT 1228
|||||||||||||||||||||||||||||||||||||||||
Sbjct 1316 TTACTACACTGTAAATATTTGAAGCTTATCTAATATCGTTT 1356
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46471835823
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5