BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G33320.1
Length=2569
Score E
Sequences producing significant alignments: (Bits) Value
Ahg933917 jgi|Araly1|933917|scaffold_401905.1 2700 0.0
> Ahg933917 jgi|Araly1|933917|scaffold_401905.1
Length=1829
Score = 2700 bits (1462), Expect = 0.0
Identities = 1711/1829 (94%), Gaps = 25/1829 (1%)
Strand=Plus/Plus
Query 743 TGATTGTGTACACAAACAATGTCGATATTTCCTTCTTTCCAATTGCTAGAGCTCAACATA 802
||||||||| |||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 3 TGATTGTGTTCACAAACAATGTCGATGTTTCCTTCTTTCCAGTTGCTAGAGCTCAACATA 62
Query 803 ATCTCTGCTCAAGATCTAGCTCCTGTCTCACGTAAAATGAAGACCTACGCGGTGGCTTGG 862
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 63 ATCTCTGCTCAAGATCTAGCTCCTGTCTCACGTAAAATGAAGACCTACGCGGTGGCTTGG 122
Query 863 GTTCACTCTGAACGCAAACTCACCACCCGCGTAGATTACACCGGTGGTGGAAACCCAACT 922
|||||||||||||| ||||||||||| |||||||||||||||||||||| |||||||||
Sbjct 123 GTTCACTCTGAACGTAAACTCACCACTCGCGTAGATTACACCGGTGGTGCAAACCCAACA 182
Query 923 TGGAACGACAAGTTTGTCTTCCGAGTTAGCGAGGATTTCCTCTACGCCGATACTTCAGCC 982
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 183 TGGAACGACAAGTTCGTTTTCCGAGTTAGCGAGGATTTCCTCTACGCCGATACTTCAGCC 242
Query 983 GTCGTGGTTGAAATCTACGCTTTACATTGGTTCCGTGATGTTCACGTTGGCACAGTCCGT 1042
|||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||
Sbjct 243 GTCGTGGTTGAAATCTACGCCTTACATTGGTTCCGTGATGTTCACGTTGGCACAATCCGT 302
Query 1043 GTCCTCATTAGCAACTTAATCCCTCCAAATCGCCGACCTGGATACCGAAGCAACGAGGAG 1102
|| ||||| |||||| |||||||||||||||| |||||||||||||||||||| || ||
Sbjct 303 GTTCTCATCAGCAACCTAATCCCTCCAAATCGTCGACCTGGATACCGAAGCAATGATGAA 362
Query 1103 TACCGTCGTACACCCCCTCCCGGAATGCGATTCGTCGCACTTCAAGTTCGCAGACCATCA 1162
|| ||||||||||| ||||| |||||| |||||||||| |||||||||||| ||||||||
Sbjct 363 TATCGTCGTACACCACCTCCAGGAATGAGATTCGTCGCGCTTCAAGTTCGCCGACCATCA 422
Query 1163 GGTCGTCCTCAAGGAATATTAAACATCGGTGTGGGAATACTGGACGGATCAATGCGTAGC 1222
||||||||||||||||||||||||||||||||||| ||||| || ||||||||||||||
Sbjct 423 GGTCGTCCTCAAGGAATATTAAACATCGGTGTGGGGATACTTGATGGATCAATGCGTAGT 482
Query 1223 ATGCCACTTTACACCAATATGGACTCTTCTGCAGTAGGTTACAGAGACTTGCTTGGAGAA 1282
|||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 483 ATGCCACTTTACACGAATATGGACTCATCTGCAGTTGGTTACAGAGACTTGCTTGGAGAA 542
Query 1283 GAAGATCCAAATCTGCAGAATTTGCATCTCAATAGCTTCAAAGGAAGCTCAAAGAATCCA 1342
|||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 543 GAAGATCCAAATTTGCAGAATTTGCATCTTAATAGCTTCAAAGGAAGCTCAAAGAATCCA 602
Query 1343 CAATCACCATCTTCTAAACAATACCAATCCGTAGTCTCGAGACCGCCAATGCTCCGTCGT 1402
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 603 CAATCACCATCTTCTAAACAATACCAATCCGTAGTCTCGAGACCGCCGGTGCTCCGTCGT 662
Query 1403 ACAAGGAGCGATACAAGTTCAATGGTCGTTTCCGATCTTCTAAGCAGAGTTGAGCGAAGT 1462
|||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||
Sbjct 663 ACAAGGAGCGATACAAGTTCAATGGTCGTTTCTGATCTTCTAAGCAGAGCTGAGCGAAGC 722
Query 1463 CGTGTAGCTAATAGGAAGCCAGCGAGCGCGTTGATGAGCGCAGAATCGGAAACTGTACCT 1522
||||| ||||| || |||||||||||||||||||||||| | ||||||||||||||||||
Sbjct 723 CGTGTGGCTAACAGAAAGCCAGCGAGCGCGTTGATGAGCACCGAATCGGAAACTGTACCT 782
Query 1523 ACAACGACGGGACACGATTC-AGTGACTTCAGATTCCGAGCTGACGAAATCGATAGAGTA 1581
|||||| ||||||||||||| | |||| |||||||||||||||||||||||||| || ||
Sbjct 783 ACAACGTCGGGACACGATTCGA-TGACGTCAGATTCCGAGCTGACGAAATCGATCGATTA 841
Query 1582 TGCACTTCCTTATCAATCCCCAAAGATTCCAAGTCAGGGATACGATTCATACGAGCCTGA 1641
|| ||||||||| |||||||||||||||||||||||| |||||||||| |||||||||||
Sbjct 842 TGGACTTCCTTACCAATCCCCAAAGATTCCAAGTCAGAGATACGATTCTTACGAGCCTGA 901
Query 1642 TTTCATAGATCAATCACCAAATCACAATGTGTTGCGGCCGAGAAGTGAGAGACAACACGA 1701
|| | |||||| ||||||||| |||||||||||||| | || | ||
Sbjct 902 TTACGTAGATCGATCACCAAACCACAATGTGTTGCG----A-----------CA-C--GA 943
Query 1702 ACCTGATTTCATAGATCAATCACCTTTTCGATCAAACGATCGTTCACGCAAAACTCCGAG 1761
|||||||||||||||||| || |||| |||||| |||||||||||||||||||||||||
Sbjct 944 ACCTGATTTCATAGATCAGTCGCCTTATCGATCTTACGATCGTTCACGCAAAACTCCGAG 1003
Query 1762 AAGATCAACACCAATGATCGAGAAACCAAGACCGCCGAGAGACTATGACCGTA-CAAGCA 1820
|||||||||||| ||||||||||||||||||||||||||||| |||||||||| || | |
Sbjct 1004 AAGATCAACACCGATGATCGAGAAACCAAGACCGCCGAGAGATTATGACCGTAGCA-GTA 1062
Query 1821 GCCGCGCTTCACCATATTTGTCAAGACACGGAACGCCGTTGAGATCAAACATCGTCGCGT 1880
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1063 GCCGCGCTTCACCGTATTTGTCAAGACACGGAACGCCGTTGAGATCAAACATCGTCGCGT 1122
Query 1881 CTACTCCGATCAGATCTAACATGGTTTCATCAAGTCCAATGAGATCCACCGGCGTCGGAT 1940
|||||||||||||||||||||||||| |||||||||| ||||||||||||||||| ||||
Sbjct 1123 CTACTCCGATCAGATCTAACATGGTTGCATCAAGTCCGATGAGATCCACCGGCGTTGGAT 1182
Query 1941 CAACTCCGAGAAGATCTAACATCCTCGGATCGACTCCGTTACGATCCAACATCGTCGGAT 2000
|||||||||||||||||||| ||||||| |||||||||||||| ||||||||||| ||||
Sbjct 1183 CAACTCCGAGAAGATCTAACCTCCTCGGTTCGACTCCGTTACGTTCCAACATCGTTGGAT 1242
Query 2001 CAACTCCGATTAGATCTAACTACAAGGCTACACCGATGAAATCGCCTATGCAATTTGGTA 2060
||||||||||| |||||||||||| |||||||||||||||||||||| | ||||| ||||
Sbjct 1243 CAACTCCGATTCGATCTAACTACATGGCTACACCGATGAAATCGCCTTTACAATTCGGTA 1302
Query 2061 CTCCGATGAGATCTAATTTAGCAGGAAGACCGGTTTTAACAGAATCCGAATTAGGTCCGT 2120
|||||||||||||||||||||||||| ||||| ||||||| |||||||||||||||||||
Sbjct 1303 CTCCGATGAGATCTAATTTAGCAGGACGACCGATTTTAACCGAATCCGAATTAGGTCCGT 1362
Query 2121 CGCCATCAGAAGTAGCGCAGAAAATGGCGAAAGAGAGATCACAAGCTTACGAAACAGAGA 2180
||||||| |||||||| |||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1363 CGCCATCGGAAGTAGCACAGAAAATGGCGAAAGAGAGATCACAAGCTAACGAAACAGAGA 1422
Query 2181 GTTCGATTCTTAGTGAATGGAGCTTAGACGATGATAGTAACATCGAAGGTCTCCGATCGA 2240
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1423 GTTCGATTCTTAGTGAATGGAGCTTAGACGATGACAGTAACATCGAAGGTCTCCGATCGA 1482
Query 2241 AACTTGAGAGATGGAGAACAGAGCTTCCGCCGCTTTACGATCTGGGATCGAGTCATCAAA 2300
|||| ||| ||||| |||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 1483 AACTCGAGCGATGGCGAACGGAGCTTCCGCCGCTTTACGATCTGGGATCGAGCCATCAAA 1542
Query 2301 GCAGCGATGTAGGAAGCGGCGCGATGGTTGTTGCTAATGTAGGTGGAGGAAAAAGCTCGA 2360
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1543 GCAGCGATGTAGGAAGCGGCGCGATTGTTGTTGCTAATGTAGGTGGAGGAAAAAGCTCGA 1602
Query 2361 GGAAGAAAACTCCGGCGGTGAAGAAGAAGCATAATCGCCGTCACACTGAAGGAGGAGGTA 2420
||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1603 GGAAGAAAACTCCGGTGGTGAAGAAGAAGCATAATCGCCGTCACACTGAAGGAGG---TA 1659
Query 2421 ACGGACTTTTCTCGTGTTTTAGTAATTTGTGCGGCGTGGAATGCACATTCGTGTGTGGAG 2480
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1660 ACGGACTTTTCTCGTGTTTTAGTAATTTGTGCGGCGTTGAATGCACATTCGTGTGTGGAG 1719
Query 2481 GCGGGTCGGATCAAGACGGGTCAAAAAAGAAAGGTGGGTCTGGGCGTTTGCCCCGCTTGG 2540
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1720 GCGGGTCGGATCAAGACGGGTCAAAAAAGAAAGGTGGCTCTGGGCGTTTGCCCCGCTTGG 1779
Query 2541 GCTCTGCTGATGATTTGAGTTATTTATGA 2569
| |||||||||||||||||||||||||||
Sbjct 1780 GTTCTGCTGATGATTTGAGTTATTTATGA 1808
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 96863493035
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5