BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G33330.1
Length=1315
Score E
Sequences producing significant alignments: (Bits) Value
Ahg901152 jgi|Araly1|901152|Al_scaffold_0004_1802 1507 0.0
Ahg470432 jgi|Araly1|470432|fgenesh2_kg.1__386__AT1G04520.1 806 0.0
> Ahg901152 jgi|Araly1|901152|Al_scaffold_0004_1802
Length=915
Score = 1507 bits (816), Expect = 0.0
Identities = 882/915 (96%), Gaps = 0/915 (0%)
Strand=Plus/Plus
Query 110 ATGGGGTTTTATTCACTGAAGCAGCTTTTGTTACTTTACATCATCATCATGGCTCTGTTC 169
||||| |||||||||| |||||||| |||| ||||||||||||||||||||||||||||
Sbjct 1 ATGGGTTTTTATTCACAAAAGCAGCTCTTGTCACTTTACATCATCATCATGGCTCTGTTC 60
Query 170 TCAGATCTCAAGCTAGCAAAATCTTCTTCACCAGAGTACACGAACCTAATCTACAAAGGT 229
||||||||||||| ||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 61 TCAGATCTCAAGCAAGCAAAATCGTCTTCACCAGAGTACACAAACCTAATCTACAAAGGT 120
Query 230 TGTGCAAGACAGAGATTATCAGATCCATCTGGTTTATACTCACAAGCTCTCTCTGCAATG 289
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TGTGCAAGACAGAGATTATCAGATCCATCTGGTTTATACTCACAAGCTCTCTCTGCAATG 180
Query 290 TATGGCTTATTGGTTACTCAATCAACGAAAACAAGATTCTACAAAACCACAACTGGAACA 349
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TATGGCTTATTGGTTTCTCAATCAACGAAAACAAGATTCTACAAAACCACAACTGGAACC 240
Query 350 ACAAGCCAAACAAGCGTCACTGGTCTTTTCCAGTGTAGAGGAGATTTAAGTAACAACGAC 409
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 ACAAGCCAAACAAGCGTCACTGGTCTTTTCCAGTGTAGAGGAGATTTAAGTAACAACGAT 300
Query 410 TGTTACAACTGTGTTAGTCGTCTTCCTGTTCTCTCTGGTAAGCTCTGTGGCAAAACCATT 469
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 301 TGTTACAACTGTGTTAGTCGTCTTCCTGTTCTCTCTGGTAAGCTCTGCGGCAAAACCATT 360
Query 470 GCTGCTAGAGTTCAGCTCTCCGGCTGTTATCTTCTCTATGAAATCTCTGGCTTTGCCCAA 529
|| ||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 361 GCCGCTAGGGTTCAGCTCTCCGGCTGTTACCTTCTCTATGAAATCTCTGGCTTTGCCCAA 420
Query 530 ATTTCAGGAATGGAGTTGTTATTCAAGACATGTGGGAAGAACAACGTCGCCGGGACAGGA 589
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 421 ATTTCAGGAATGGAGTTGTTATTCAAGACATGTGGGAAGAACAACGTCGCCGGAACAGGA 480
Query 590 TTCGAACAGAGAAGAGACACAGCTTTCGGGGTGATGCAAAACGGCGTCGTTCAAGGTCAC 649
||||| ||||||||||||||||| |||||||| ||||||||||||||||||||||| |||
Sbjct 481 TTCGAGCAGAGAAGAGACACAGCGTTCGGGGTAATGCAAAACGGCGTCGTTCAAGGACAC 540
Query 650 GGCTTCTACGCAACGACATACGAATCGGTTTACGTTTTAGGACAATGCGAAGGCGATATA 709
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 541 GGCTTCTACGCGACGACATACGAATCGGTTTACGTTTTAGGACAATGCGAAGGCGATTTA 600
Query 710 GGCGATTCAGATTGTAGCGGTTGCATAAAAAACGCGTTACAGAGAGCTCAAGTCGAATGT 769
|| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 601 GGTGATTCAGATTGTAGCGGTTGCATAAAAAACGCGTTACAGAGAGCTCAAGTAGAATGT 660
Query 770 GGAAGCTCAATATCTGGTCAGATATATCTTCATAAGTGTTTTGTCGGTTATAGTTTCTAC 829
||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 661 GGAAGCTCAATCTCTGGTCAGATATATCTTCATAAGTGTTTTGTCGCTTATAGTTTCTAC 720
Query 830 CCAAATGGTGTTCCCAAGAGAtcttctccttatcctagctctggctcttcgggttcttct 889
|||||||||||||||||||| |||||||||||||||||||||||||||||| ||| |||
Sbjct 721 CCAAATGGTGTTCCCAAGAGGTCTTCTCCTTATCCTAGCTCTGGCTCTTCGACTTCGTCT 780
Query 890 tcttcttcatcttcttcAGGAACAACAGGCAAAACGGTGGCAATAATAGTAGGAGGAACA 949
|||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 TCTTCTTCTTCTTCAGCAGGAACAACAGGCAAAACGGTGGCAATAATAGTAGGAGGAACA 840
Query 950 GCTGGTGTTGGATTTCTTGTCATTTGCTTACTTTTCGTCAAAAACTTGATGAAGAAGAAA 1009
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 GCTGGTGTTGGATTTCTTGTCATTTGCTTACTTTTCGTCAAAAACTTGATGAAGAAGAAA 900
Query 1010 TATGACGATTATTGA 1024
|||||||||||||||
Sbjct 901 TATGACGATTATTGA 915
> Ahg470432 jgi|Araly1|470432|fgenesh2_kg.1__386__AT1G04520.1
Length=1411
Score = 806 bits (436), Expect = 0.0
Identities = 775/932 (83%), Gaps = 50/932 (5%)
Strand=Plus/Plus
Query 164 CTG-TTCTCAGATCTCAA-G-C-TAGCAAAATCTTCTTCACCAGAGTACACGAACC-TAA 218
||| ||| |||||||||| | | ||| | ||||| | || | || ||||| |||| |||
Sbjct 285 CTGTTTC-CAGATCTCAATGTCGTAGTAGAATCTGCAACAACGGAATACAC-AACCTTAA 342
Query 219 TCTACAAAGGTTGTGCAAGACAG-AGATTATCAGATCCATCTGGTTTATACTCACAAGCT 277
|||||||||| |||||||||||| | ||| ||||||||||||||||||||||||||||||
Sbjct 343 TCTACAAAGGATGTGCAAGACAGCA-ATTCTCAGATCCATCTGGTTTATACTCACAAGCT 401
Query 278 CTCTCTGCAATGTAT-GGCTTATTGGT-TACTCAATCAACGAAAACAAGATTCTACAAAA 335
|||||||| |||| | |||| |||||| | | || || || ||||| ||||||||||| |
Sbjct 402 CTCTCTGCTATGT-TCGGCTCATTGGTCT-CGCAGTCTACTAAAACCAGATTCTACAAGA 459
Query 336 CCACAACTGGAACAACAAGCCA-AACAAGC-GTCACTGGTCTTTTCCAGTGTAGAGGAGA 393
||||||| || |||||| || ||| | | |||||||||| |||||||| ||||||||
Sbjct 460 CCACAAC-GG--GAACAAG-CACAACTA-CAATCACTGGTCTGTTCCAGTGCAGAGGAGA 514
Query 394 TTTAAGTAACAACGACTGTTACAACTGTGTTAGTCGTCTTCCTGTTCTCTCTGGTAAGCT 453
|||||| ||| | |||||||||||||||||||||||||||||||||||||| | |||||
Sbjct 515 TTTAAGCAACCATGACTGTTACAACTGTGTTAGTCGTCTTCCTGTTCTCTCCGACAAGCT 574
Query 454 CTGTGGCAAAACCATTGCTGCTAGAGTTCAGCTCTCCGGCTGTTATCTTCTCTATGAAAT 513
||||||||||||||||||| | |||||||| || |||||||||||||||||||||||| |
Sbjct 575 CTGTGGCAAAACCATTGCTTCAAGAGTTCAACTTTCCGGCTGTTATCTTCTCTATGAAGT 634
Query 514 CT-CTGGCTTTGCCCAAATTTCAGGAATGGAGTTGTTATTCAAGACATGTGGGAAGAACA 572
| |||||||| | ||||||||||| |||||| |||| |||||||| || ||||||| ||
Sbjct 635 -TGCTGGCTTTTCTCAAATTTCAGGGATGGAGATGTTGTTCAAGACCTGCGGGAAGAGCA 693
Query 573 ACGTCGCCGGGACAGGATTCGAACAGAGAAGAGACACAGC-TTTCGGGGTGATGCAAAAC 631
|| ||||||| ||||| |||||| ||||||||||||| || ||| |||||||||||||||
Sbjct 694 ACATCGCCGGAACAGGGTTCGAAGAGAGAAGAGACACGGCGTTT-GGGGTGATGCAAAAC 752
Query 632 GGCGTCGT-TCAAGGTCACGGCTTCTACGCAACGACATACGAATCGGTTTACGTTTTAGG 690
||||| || ||| || || || |||||||| || || |||||||| || |||||||||||
Sbjct 753 GGCGTAGTATCA-GGCCATGGATTCTACGCTACTACGTACGAATCTGTCTACGTTTTAGG 811
Query 691 ACAATGCGAAGGCGATATAGGCGATTCAGATTGTAGCGGTTGCATAAAAAACGCGTTAC- 749
|||||||||||||||| | || || | ||||| ||||| ||||||||||| || | |
Sbjct 812 ACAATGCGAAGGCGATGTCGGAGACACCGATTGCAGCGGATGCATAAAAAATGCACT-CG 870
Query 750 AGAGAGCTCAAGTCGAATGTGGAAGCTCAATATCTGGTCAGATATATCTTCATAAGTGTT 809
||| |||||| || ||||||||||||||||| || |||||||| || || ||||||||||
Sbjct 871 AGAAAGCTCAGGTGGAATGTGGAAGCTCAATCTCCGGTCAGATTTACCTCCATAAGTGTT 930
Query 810 TTGTCGGTTATAGTT-TCTACCCAAATGGTGTTCCCAAGAGAtcttct-c--ctt-atcc 864
| ||| |||||||| | |||||||||||||| |||| |||||||||| | ||| |||
Sbjct 931 TCATCGCTTATAGTTAT-TACCCAAATGGTGTCCCCAGGAGATCTTCTTCTTCTTCATCT 989
Query 865 tag-ct-ctggctct---tcgggttcttc---ttct--tc-ttcatcttcttcAGGAACA 913
| | || || ||| || || ||||| ||| || ||| |||||| ||||| ||
Sbjct 990 TCGTCTTCTTCCTCCAGCTCTGGCTCTTCAAATTCAGATCCTTCGTCTTCTACAGGAGCA 1049
Query 914 ACAGGCAAAACGGTGGCAATAATAGTAGGAGGAACAGCTGGTGTTGGATTTCTTGTCATT 973
||||| || |||||||||||||||||||||||| ||||||||||||| ||||||||||||
Sbjct 1050 ACAGGGAAGACGGTGGCAATAATAGTAGGAGGAGCAGCTGGTGTTGGCTTTCTTGTCATT 1109
Query 974 TGCTTACTTTTCGTCAAAAACTTGATGAAGAAGAAATATGACGATTATTGAAA-ATAATT 1032
||||||||||| | |||||||||||||| ||||||| ||||||| |||||||| ||
Sbjct 1110 TGCTTACTTTTTGCCAAAAACTTGATGAGGAAGAAACATGACGACTATTGAAAGATGG-- 1167
Query 1033 AGGATGAAGACAACAAAATGAGTCCCAACCCC 1064
||| ||||| ||||||| | |||| || |||
Sbjct 1168 AGGG-GAAGAGAACAAAAGGTGTCC-AATCCC 1197
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49178562930
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5