BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G33340.1
Length=2098
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482274 jgi|Araly1|482274|fgenesh2_kg.4__1334__AT2G33340.1 2608 0.0
Ahg919131 jgi|Araly1|919131|scaffold_100412.1 1574 0.0
> Ahg482274 jgi|Araly1|482274|fgenesh2_kg.4__1334__AT2G33340.1
Length=1945
Score = 2608 bits (1412), Expect = 0.0
Identities = 1535/1595 (96%), Gaps = 6/1595 (0%)
Strand=Plus/Plus
Query 23 TTCCCGGCTTCCGCGTTTTTGCTTTGTA-GCGCCGGACCGGAGAAGATAAAACCCTTGCT 81
||||||||||||||| |||||||||| | ||||||||||||||||||||||||||| |||
Sbjct 1 TTCCCGGCTTCCGCGATTTTGCTTTG-AGGCGCCGGACCGGAGAAGATAAAACCCTAGCT 59
Query 82 CCGCCCCACTCACAGGAAGTTCTACATCGACCTGAGTTCTCGTACTTCGTCGTATCACTC 141
|||||||||||||||| |||||||| | ||||||||||| || ||||||||||| ||||
Sbjct 60 CCGCCCCACTCACAGGGAGTTCTACGCCCACCTGAGTTCTTGTGCTTCGTCGTATTACTC 119
Query 142 GTTCTTCCTACGATGAACTGTGCAATTTCAGGAGAAGTTCCCGTGGAGCCAGTGGTTTCG 201
|||||| |||||||||||||||||||||| |||||||||||| ||||||||||||||||
Sbjct 120 GTTCTTTCTACGATGAACTGTGCAATTTCCGGAGAAGTTCCCAAGGAGCCAGTGGTTTCG 179
Query 202 ACGAAGTCAGGATTACTCTTCGAGAGACGACTAATCGAAAGACATATATCGGATTATGGG 261
|| |||||||| || ||||||||||||||| |||||||||| ||||||||||||||||||
Sbjct 180 ACCAAGTCAGGTTTGCTCTTCGAGAGACGATTAATCGAAAGGCATATATCGGATTATGGG 239
Query 262 AAGTGCCCGGTTACTGGCGAACCACTTACCATTGATGACATTGTTCCCATCAAAACTGGG 321
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 AAGTGCCCTGTTACTGGCGAACCACTTACCATTGATGACATTGTTCCCATCAAAACTGGG 299
Query 322 GAGATCATAAAGCCGAAAACATTGCATACAGCTAGTATCCCTGGATTGCTCGGAACGTTC 381
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 300 GAGATCATAAAGCCGAAAACATTGCATACAGCTAGCATCCCTGGATTGCTCGGAACGTTC 359
Query 382 CAGAATGAATGGGACGGTTTGATGCTATCAAATTTTGCACTGGAGCAACAACTACATACT 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 CAGAATGAATGGGACGGTTTGATGCTATCAAATTTTGCACTGGAGCAACAACTACATACT 419
Query 442 GCAAGGCAAGAGCTAAGTCATGCCTTGTATCAGCATGATTCTGCTTGTCGTGTGATTGCT 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 GCAAGGCAAGAGCTAAGTCATGCCTTGTATCAGCATGATTCTGCTTGTCGTGTGATTGCT 479
Query 502 AGACTTAAAAAAGAAAGAGACGAAGCACGCCAATTACTGGCCGAGGTTGAGA-GACATAT 560
||||| |||||||||||||||||||||||||||||||| || ||||| || | |||||||
Sbjct 480 AGACTCAAAAAAGAAAGAGACGAAGCACGCCAATTACTTGCAGAGGT-GAAAAGACATAT 538
Query 561 ACCTGCGGCCCCTGAAGCTGTGACAGCTAATGCTGCTCTGAGTAATGGTAAACGAGCTGC 620
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 539 ACCTGCGGCCCCAGAAGCTGTGACAGCTAATGCTGCTCTGAGTAATGGTAAACGAGCTGC 598
Query 621 CGTTGACGAGGAACTGGGTCCTGATGCAAAGAAATTGTGTCCTGGAATTTCAGCTGAAAT 680
|| ||| || |||||||||||| ||||||||||||| |||||||||||||| ||||||||
Sbjct 599 CGGTGATGAAGAACTGGGTCCTAATGCAAAGAAATTATGTCCTGGAATTTCTGCTGAAAT 658
Query 681 TATTACGGAATTGACTGATTGTAATGCTGCTCTTTCCCAGAAGCGAAAAAAGCGACAGAT 740
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 659 TATTACGGAATTGACTGATTGTAATGCTGCTCTTTCCCAGAAGCGTAAAAAGCGACAGAT 718
Query 741 TCCTCAAACATTGGCGTCAATAGATACTTTGGAGAGGTTCACTCAGCTATCAAGCCACCC 800
| ||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 719 TTCTCAAACATTGGCTTCAATAGATGCTTTGGAGAGGTTCACTCAGCTATCAAGCCACCC 778
Query 801 ACTTCACAAGACCAACAAACCAGGCATTTGTTCGATGGACATTCTACATTCTAAGGATGT 860
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 779 ACTTCACAAGACCAACAAACCAGGCATTTGTTCGATGGACATTCTACATTCTAAGGATGT 838
Query 861 CATTGCTACTGGAGGAGTTGATGCAACTGCTGTTCTCTTTGATCGCCCTTCTGGACAAAT 920
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 839 CATTGCTACTGGAGGAGTTGATGCGACTGCTGTTCTCTTTGATCGCCCTTCTGGACAAAT 898
Query 921 CTTGTCAACACTGACTGGTCACTCGAAGAAGGTTACAAGCGTAAAATTTGTAGGCGACTC 980
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 899 CTTGTCAACACTGACTGGTCACTCGAAGAAGGTTACAAGCGTAAAATTTGTAGGCGACGC 958
Query 981 TGATCTTGTTTTGACTGCTTCTGCTGACAAGACAGTCCGTATCTGGCGGAATCCTGGGGA 1040
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 959 TGATCTTGTTTTGACTGCTTCTGCTGACAAGACAGTCCGTATCTGGCGGAATCCTGGGGA 1018
Query 1041 TGGGAATTATGCTTGTGGGTATACATTGAATGATCATTCTGCGGAGGTGCGAGCTGTAAC 1100
|||||| |||||||||||| |||||||||||||||| ||||| ||||||||||| |||||
Sbjct 1019 TGGGAACTATGCTTGTGGGCATACATTGAATGATCACTCTGCAGAGGTGCGAGCCGTAAC 1078
Query 1101 TGTGCATCCCACAAATAAATACTTTGTCTCGGCATCTCTTGATGGTACATGGTGCTTCTA 1160
||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||
Sbjct 1079 TGTGCATCCCACAAATAAATACTTTGTGTCGGCATCTCTTGATAGTACATGGTGCTTCTA 1138
Query 1161 CGATCTGTCCTCTGGCTCATGCCTTGCACAGGTATCAGATG-ATTCAAAGAATGTAGATT 1219
|||||||||||||||||||||||||||||||||||||||| || || |||||| |||||
Sbjct 1139 TGATCTGTCCTCTGGCTCATGCCTTGCACAGGTATCAGATGGAT-CAGAGAATGCAGATT 1197
Query 1220 ACACGGCTGCTGCTTTTCATCCCGATGGTCTCATTCTCGGAACCGGTACTTCTCAATCTG 1279
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1198 ACACGGCTGCTGCTTTTCATCCCGATGGTCTCATTCTCGGAACCGGTACTTCTCAATCTG 1257
Query 1280 TTGTTAAGATTTGGGACGTTAAAAGTCAGGCAAATGTGGCTAAGTTTGATGGACACACTG 1339
|||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1258 TTGTTAAGATTTGGGATGTTAAAAGTCAGGCAAATGTGGCAAAGTTTGATGGACACACTG 1317
Query 1340 GGGAAGTTACAGCTATATCTTTCTCTGAAAATGGTTACTTCCTCGCGACAGCTGCAGAGG 1399
| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 1318 GCGAAGTTACAGCTATATCTTTCTCTGAAAATGGTTACTTCCTCGCGACGGCTGCCGAGG 1377
Query 1400 ATGGTGTTAGGTTGTGGGATCTGCGCAAGTTAAGGAACTTCAAATCATTTTTATCTGCAG 1459
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1378 ATGGTGTTAGGTTGTGGGATCTGCGCAAGTTAAGGAACTTCAAGTCATTTTTATCTGCAG 1437
Query 1460 ATGCGAACTCTGTGGAGTTTGATCCTAGCGGATCTTATCTCGGTATTGCTGCATCAGATA 1519
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1438 ATGCGAACTCTGTGGAGTTTGATCCTAGCGGATCTTATCTCGGTATTGCTGCATCAGATA 1497
Query 1520 TCAAAGTATACCAGACGGCAAGTGTGAAAGCTGAATGGAACCTTATCAAGACACTCCCAG 1579
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1498 TCAGAGTATACCAGACGGCAAGTGTGAAAGCTGAATGGAACCTTATCAAGACACTCCCAG 1557
Query 1580 ATCTCTCCGGCACTGGTAAAGCTACGTGTGTGAAG 1614
|||||||||||||||||||||||||||||||||||
Sbjct 1558 ATCTCTCCGGCACTGGTAAAGCTACGTGTGTGAAG 1592
Score = 425 bits (230), Expect = 5e-118
Identities = 323/365 (88%), Gaps = 17/365 (5%)
Strand=Plus/Plus
Query 1654 GACCGTAACCTACGGATATTTGGTCTTCCTGGTGATGAAAAAGCCAACGTCGATGATGAC 1713
|||| |||||||||||||||||||||||||||||| ||||||||||||| ||||||||||
Sbjct 1592 GACCATAACCTACGGATATTTGGTCTTCCTGGTGACGAAAAAGCCAACGCCGATGATGAC 1651
Query 1714 TCTGCGCAAGACTCGTGAACAATCCGTAAAAA-ACTCAGACAG-AACATTCCAAATGTCC 1771
||||| ||||||||||||| |||||||||||| |||||||||| || ||||||||||| |
Sbjct 1652 TCTGCACAAGACTCGTGAAGAATCCGTAAAAAGACTCAGACAGCAA-ATTCCAAATGTTC 1710
Query 1772 ATCTCCAG-TGTTATCTCGCTCAAATTTCTCAAGTTCTGTTGTATCTTACAGTATTTGCA 1830
|||||| | | | |||| |||| |||||||||| || ||||||||||| |||||||||||
Sbjct 1711 ATCTCCGGCTAT-ATCTTGCTCCAATTTCTCAACTTTTGTTGTATCTTCCAGTATTTGCA 1769
Query 1831 GCAATGGGGGAGAATTTCATAGGTGCGGGTCATGAGTGAGTGGTGATTGTGATCATCCTC 1890
|||| ||||||||||||| |||||||||||||||||||||| | |||||||||||||||
Sbjct 1770 GCAA-GGGGGAGAATTTCTTAGGTGCGGGTCATGAGTGAGT--T-ATTGTGATCATCCTC 1825
Query 1891 GCTACCTCTTGGA-ATTCAAACAATGACACTCACAAACCCTCGAGTTTTCTTATAGGCTC 1949
||| |||| | | |||||||| || ||||||||| || |||||||||||||||||||||
Sbjct 1826 GCTTCCTCC-G-ACATTCAAACGATCACACTCACACACACTCGAGTTTTCTTATAGGCTC 1883
Query 1950 TTTTAATCGCT-TT-GTACCTTCAATATATGTACCAAAAAATGTGTTCTTTCTGTTGCCA 2007
|| ||||| || || |||||||||| || ||||||||| | |||||||||||||||||
Sbjct 1884 TTCTAATCTCTCTTTGTACCTTCAAAATCTGTACCAAAC--T-TGTTCTTTCTGTTGCCA 1940
Query 2008 AATGA 2012
|||||
Sbjct 1941 AATGA 1945
> Ahg919131 jgi|Araly1|919131|scaffold_100412.1
Length=1617
Score = 1574 bits (852), Expect = 0.0
Identities = 1330/1559 (85%), Gaps = 40/1559 (3%)
Strand=Plus/Plus
Query 153 GATGAACTGTGCAATTTCAGGAGAAGTTCCCGTGGAGCCAGTGGTTTCGACGAAGTCAGG 212
|||||| ||||||||||| || |||||||| | |||||| |||||||| | |||||| ||
Sbjct 28 GATGAATTGTGCAATTTCCGGCGAAGTTCCGGAGGAGCCTGTGGTTTCTAAGAAGTCGGG 87
Query 213 ATTACTCTTCGAG-AGACGACTAATCGAAAGACATATATCGGATTATGGGAAGTGCCCGG 271
|| |||| |||| || || |||||||| || |||||||||||||||||||| |||||||
Sbjct 88 TTTGCTCTACGAGAAG-CGGCTAATCGAGAGGCATATATCGGATTATGGGAAATGCCCGG 146
Query 272 TTACTGGCGAACCACTTAC-CATTGATGACATTGTTCCCATCAAAACTGGGGAGATCATA 330
||||||| ||||||| ||| | ||||||||||||||||||||||||||||| ||||| ||
Sbjct 147 TTACTGGTGAACCACATACTC-TTGATGACATTGTTCCCATCAAAACTGGGAAGATCGTA 205
Query 331 AAGCCGAAAACATTGCATACAGCTAGTATCCCTGGATTGCTCGGAACGTTCCAGAATGAA 390
||||||||| |||| || |||||||| |||||||||||||||||||||||||||| ||||
Sbjct 206 AAGCCGAAACCATTACACACAGCTAGCATCCCTGGATTGCTCGGAACGTTCCAGACTGAA 265
Query 391 TGGGACGGTTTGATGCTATCAAATTTTGCACTGGAGCAACAACTACATACTGCAAGGCAA 450
|||||| |||||||||||||||||||||||||||| |||||||| |||||||| ||||||
Sbjct 266 TGGGACAGTTTGATGCTATCAAATTTTGCACTGGAACAACAACTGCATACTGCTAGGCAA 325
Query 451 GAGCTAAGTCATGCCTTGTATCAGCATGATTCTGCTTGTCGTGTGATTGCTAGACTTAAA 510
|||||||||||||| ||||||||||||||| |||||||||||||||||||||| ||||||
Sbjct 326 GAGCTAAGTCATGCTTTGTATCAGCATGATGCTGCTTGTCGTGTGATTGCTAGGCTTAAA 385
Query 511 AAAGAAAGAGACGAAGCACGCCAATTACTGGCCGAGGTTGAGAGACA-TATACCTGCGGC 569
||||||||||||||| |||| ||||| || || |||| ||| || || | ||||||| ||
Sbjct 386 AAAGAAAGAGACGAATCACGACAATTGCTTGCAGAGGCTGAAAGGCAGT-TACCTGCAGC 444
Query 570 CCCTGAAGCTGTGACAGCTAATGCTGCTCTGAGTAATGGTAAACGAGCTGCCGTTGACGA 629
||| |||| || ||| | ||||||||||| |||||||||||||||| | || ||| |
Sbjct 445 CCCCGAAGTTGCCACATCGAATGCTGCTCTTAGTAATGGTAAACGAGGTATCGATGATG- 503
Query 630 G-GAACTGGGTCCTGATGCAAAGAAATTGTGTCCTGGAATTTCAGCTGAAATTATTACGG 688
| || | ||| || |||||||||||| || ||| ||||||||| |||||| |||| || |
Sbjct 504 GTGAGCAGGGGCCCGATGCAAAGAAAATGCGTCTTGGAATTTCGGCTGAAGTTATCACAG 563
Query 689 AATTGACTGATTGTAATGCTGCTCTTTCCCAG-AAGCGAAAAAAGCGACAGATTCCTCAA 747
|| |||| |||||||||||||||||||| ||| || || |||||| ||||||| ||| ||
Sbjct 564 AACTGACGGATTGTAATGCTGCTCTTTCTCAGCAA-CGTAAAAAGAGACAGATCCCTAAA 622
Query 748 ACATTGGCGTCAATAGATACTTTGGAGAGGTTCACTCAGCTATCAAGCCACCCACTTCAC 807
|||||||| ||||| ||| || |||||| |||||| || || ||||||||||||||||||
Sbjct 623 ACATTGGCTTCAATTGATGCTCTGGAGAAGTTCACCCAACTCTCAAGCCACCCACTTCAC 682
Query 808 AAGACCAACAAACCAGGCATTTGTTCGATGGACATTCTACATTCTAAGGATGTCATTGCT 867
|||||||||||||| || |||| ||| |||||||| |||||||||||||||||||| |||
Sbjct 683 AAGACCAACAAACCTGGTATTTTTTCAATGGACATCCTACATTCTAAGGATGTCATCGCT 742
Query 868 ACTGGAGGAGTTGATGCAACTGCTGTTCTCTTTGATCGCCCTTCTGGACAAATCTTGTCA 927
|| || ||| ||||| ||||||| |||||||||||||| ||||| ||||||||||| |||
Sbjct 743 ACAGGGGGAATTGATACAACTGCCGTTCTCTTTGATCGTCCTTCAGGACAAATCTTATCA 802
Query 928 ACACTGACTGGTCACTCGAAGAAGGTTACAAGCGTAAAATTTGTAGGCGACTCTGATCTT 987
|| |||||||||||||| ||||||||||||||| | || ||||| || ||| ||||||||
Sbjct 803 ACGCTGACTGGTCACTCAAAGAAGGTTACAAGCATTAAGTTTGTTGGTGACACTGATCTT 862
Query 988 GTTTTGACTGCTTC-TGCTGACAAGACAGTCCGTATCTGGCGGAA-TCCTGGGGATGGGA 1045
|| || |||||||| | | ||||| |||||||| |||||| |||| | ||| ||||||||
Sbjct 863 GTGTTAACTGCTTCAT-CAGACAAAACAGTCCGCATCTGG-GGAAGTTCTGAGGATGGGA 920
Query 1046 ATTATGCTTGTGGGTATACATTGAATGATCATTCTGCGGAGGTGCGAGCTGTAACTGTGC 1105
| ||| | ||| | |||||||||| ||||| ||||| |||||||||||||||||||| |
Sbjct 921 ACTATACCTGTAGACATACATTGAAAGATCACTCTGCAGAGGTGCGAGCTGTAACTGTCC 980
Query 1106 ATCCCA-CAAATAAATACTTTGTCTCGGCATCTCTTGATGGTACATGGTGCTTCTACGAT 1164
| | || | |||||||||||||| || ||||||||||| |||||||||||||||| |||
Sbjct 981 A-CGCAACGAATAAATACTTTGTGTCAGCATCTCTTGACAGTACATGGTGCTTCTATGAT 1039
Query 1165 CTGTCCTCTGGCTCATGCCTTGCACAGGT-ATCAGATGATTCA-AAGAATGTAGATTACA 1222
|||||||| || | ||||||||| ||||| | |||||| ||| || ||||| |||||||
Sbjct 1040 CTGTCCTCCGGTTTATGCCTTGCCCAGGTGA-CAGATGCTTCCGAA-AATGTGGATTACA 1097
Query 1223 CGGCTGCTGCTTTTCATCCCGATGGTCTCATTCTCGGAACCGGTACTTCTCAATCTGTTG 1282
|||||||||||||||||||||| ||||||||||| ||||| |||||| |||||||| |||
Sbjct 1098 CGGCTGCTGCTTTTCATCCCGACGGTCTCATTCTTGGAACTGGTACTGCTCAATCTATTG 1157
Query 1283 TTAAGATTTGGGACGTTAAAAGTCAGGCAAATGTGGCTAAGTTTGATGGACACACTGGGG 1342
||||||||||||| || |||||||||||||||||||| ||||||| ||||||||||| |
Sbjct 1158 TTAAGATTTGGGATGTAAAAAGTCAGGCAAATGTGGCAAAGTTTGGCGGACACACTGGAG 1217
Query 1343 AAGTTACAGCTATATCTTTCTCTGAAAATGGTTACTTCCTCGCGACAGCTGCAGAGGATG 1402
|| | || ||||||| ||||||||||| ||||| ||||| ||||| |||||| ||||||
Sbjct 1218 AAATCACCTCTATATCATTCTCTGAAAACGGTTATTTCCTTGCGACTGCTGCACAGGATG 1277
Query 1403 GTGTTAGGTTGTGGGATCT-GCGCAAGTTAAGGAACTTCA-AATCATTTTTA-TCTGCAG 1459
|||||||||||||||| || ||||||||||| ||||||| || ||||| | | | |||
Sbjct 1278 GTGTTAGGTTGTGGGA-CTTGCGCAAGTTAAAGAACTTCCGAA-CATTTG-ACTTTCCAG 1334
Query 1460 ATGCGAACTCTGTGGAGTTTGATCC-TAGCGGATCTTATCTCGGTATTGCTGCATCAGAT 1518
|||| ||||| |||||||| || || ||| ||||||||||| || |||||||| ||||||
Sbjct 1335 ATGCAAACTCGGTGGAGTTCGA-CCATAGTGGATCTTATCTTGGCATTGCTGCTTCAGAT 1393
Query 1519 ATCAA-AGTATACCAGACGGCAAGTGTGAAAGCTGAATGGAACCTTATCAAGACACT-CC 1576
|| || ||||| ||| || || ||||| ||||| |||||||||| |||||||| || ||
Sbjct 1394 AT-AAGAGTATTCCAAACAGCTAGTGTAAAAGCAGAATGGAACCCAATCAAGACTCTTCC 1452
Query 1577 CAGATCTCTCCGGCACTGGTAAAGCTACGTGTGTGAAGTTTGGT-TCAGA-TGCACAGTA 1634
| ||||| ||||| || |||||||| || ||||| |||||||| || || | || | ||
Sbjct 1453 C-GATCTGTCCGGTACAGGTAAAGCAACATGTGTTAAGTTTGGACTC-GACTCCAAA-TA 1509
Query 1635 CGTTGCAGTCGGTTCGATGGACCGTAACCT-ACGGATATTTGGTCTT-CCTGGTGATGA 1691
| | ||||||||||| ||||||||||| || | ||||||||||| || || || |||||
Sbjct 1510 CATAGCAGTCGGTTCAATGGACCGTAATCTCA-GGATATTTGGT-TTACCCGGCGATGA 1566
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78922987640
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5