BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G33350.1
Length=1738
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482277 jgi|Araly1|482277|fgenesh2_kg.4__1337__AT2G33350.1 2185 0.0
Ahg919129 jgi|Araly1|919129|scaffold_100410.1 468 7e-131
> Ahg482277 jgi|Araly1|482277|fgenesh2_kg.4__1337__AT2G33350.1
Length=1668
Score = 2185 bits (1183), Expect = 0.0
Identities = 1434/1549 (93%), Gaps = 41/1549 (3%)
Strand=Plus/Plus
Query 3 TATTTGAATTTCTTCCATGGATTTTCTTGTTCATCATACATCACTCATTCCAATATTATT 62
||||||||||||||| ||||||||||||| | ||||||||||| |||||||||||||||
Sbjct 1 TATTTGAATTTCTTCGATGGATTTTCTTG-T--TCATACATCACCCATTCCAATATTATT 57
Query 63 CCACAAATCATCCTTGAAGCCTCGTTCATTAATTTTCTTGCTATAATTCATA-TTTTCTC 121
||| ||| ||||| ||||||||||| |||||||||||||||||||||||| | ||||||
Sbjct 58 CCATAAAGCATCCGTGAAGCCTCGTCCATTAATTTTCTTGCTATAATTCA-ACTTTTCTG 116
Query 122 GGGAATTTTCTTTA-TTTTCCCAGAAAGTTTTCGCATTAACATTGGAGATATACAAAG-A 179
|||||||||||||| |||||||||||| |||||||| ||||||||||||||||||| |
Sbjct 117 GGGAATTTTCTTTATTTTTCCCAGAAAAAATTCGCATTTACATTGGAGATATACAAAGAA 176
Query 180 ACACAAACATGTTGCAAGACATGATCTCGTCTCACTCTCA-CGAT-CAGCTTTCCATCGA 237
|| ||||||||||||||||| |||||||||||||| ||| | | || | | || ||
Sbjct 177 AC-CAAACATGTTGCAAGACGTGATCTCGTCTCACGATCAGCCTTCCATC-GT-AATTGA 233
Query 238 TGATATCACGAGCCCTCTTAGTGCTCAGATCTTCGATTTCTGCGATCCACAACTCTTTCA 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 234 TGATATCACGAGCCCTCTTAGTGCTCAGATCTTCGATTTCTGCGATCCACAACTCTTTCA 293
Query 298 AGAAACCTTTAATCAATCCTCTGAAGTCACCTCTACTTCAAACATTCTTGAGAAATCCGG 357
|||||||||||||||| || |||||||||||||||||||||||||||| |||||||||||
Sbjct 294 AGAAACCTTTAATCAAACCACTGAAGTCACCTCTACTTCAAACATTCTCGAGAAATCCGG 353
Query 358 AAGCTTCCATTCcaacactaacaccaccacaacaactgagaacagtaacaacaacaacaa 417
||||||||||||||||||| ||||| |||||||| ||| | |||||| |||||
Sbjct 354 AAGCTTCCATTCCAACACT---ACCACAACAACAAC----AAC--TGACAACAGTAACAA 404
Query 418 caacaagaacacaaaccttcaagacgatgaagatgacaacaacaacaCGGATCTGTCCAT 477
||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 405 CAACAAGAACACAAAACTTCAAGACGATGAAGATGACAACAACAACACGGATCTATCCAT 464
Query 478 AATCTTTGATTCACAAGAAGATTTCGAAAACGATATAACGGCTTCAATCGATTTCTCATC 537
||||||||||||||||||||||||||||||||| |||||||| ||||| |||||||||||
Sbjct 465 AATCTTTGATTCACAAGAAGATTTCGAAAACGACATAACGGCCTCAATTGATTTCTCATC 524
Query 538 ATCTTCACTGCAATATCCAGTCATCGATCATCTCCTCACGGCAATAAGCCAAGACCAGTT 597
||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 525 ATCTTCACTCCAATATCCAGTCATCGATCATCTCCTCACGGCAACAAGCCAAGACCAGTT 584
Query 598 TGATTTCTCATCAGGTCTCCAAGTTATTCATCAGCCTCCTAACATTTCATACTCTGGAGA 657
||||||||||||||| |||||| |||||||||||||| ||||||||||| ||||||||||
Sbjct 585 TGATTTCTCATCAGGACTCCAACTTATTCATCAGCCTGCTAACATTTCACACTCTGGAGA 644
Query 658 TCCTCTGTCTCTATCGGCGATTTCCTCTCTAGCTCCTCCTCCCTTACAATCAGGGGTTTT 717
|||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||
Sbjct 645 CCCTCTGTCTCTATCGGCGGTTTCCTCTCTAGCTCCTCCTCCTTTACAATCAGGGGTTTT 704
Query 718 CGAAGAAGATTGTCTTTCTTCAGTCCCAAGTTACAATCTTGGTTTGAACCCTTCTTGCTC 777
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 705 CGAAGAAGATTGTCTTTCTTCAGTCCCAAGTTACAATCTTGGCTTGAACCCTTCTTGCTC 764
Query 778 TTTCTTCCGTTCGTCCGGTTTACCGGCGTATATGAGTACCGGTTTATTATCTGCTGAAAG 837
||||||||| |||||||||||||| |||||||||| |||||||||||||||||||||||
Sbjct 765 CTTCTTCCGTACGTCCGGTTTACCGACGTATATGAGCACCGGTTTATTATCTGCTGAAAG 824
Query 838 TAATCTCGGTTATCTTCCCGGGAATATTCATGTGGGATCAGAAATCAATAAGCCACATGA 897
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 825 TAATCTCGGTTATCTTCCCGGGAATATTCATGTGGGATCAGAAATCAATAAGCCACATAA 884
Query 898 TCCACTGATGGACTTTCAAGCTGATAATGGTGGttttttttGTCCGGATTCCATCAAACG 957
|||| ||||||||||||||||||||||||||||||| |||||||||| |||||| |||||
Sbjct 885 TCCATTGATGGACTTTCAAGCTGATAATGGTGGTTTGTTTTGTCCGGGTTCCATGAAACG 944
Query 958 TATGTTTAATCCAGAAGATCTCCAGAAGGCACTTGGTGGTGGCGCCGAGAACCAGAGCCA 1017
||| |||||||||||||||||||||||||||| | |||||||| ||||||||||||| |
Sbjct 945 TATCTTTAATCCAGAAGATCTCCAGAAGGCAC-T--TGGTGGCGTCGAGAACCAGAGCAA 1001
Query 1018 CTTGGTGACACCTCAAGCTCATCCAGCATTAGGACCGGTCGATATAAACGGTTTAGAAGA 1077
||||||| ||||||| |||||||||||||||||| ||||||| |||||||||||||||||
Sbjct 1002 CTTGGTGGCACCTCAGGCTCATCCAGCATTAGGAACGGTCGAGATAAACGGTTTAGAAGA 1061
Query 1078 CTCAACGTTGAACAAAGTTGGAAAACTCTCCCCTGAGCAAAGGAAAGAGAAGATTCGTAG 1137
|||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1062 TTCAACGATGAACAAAGTTGGAAAACTATCCCCTGAGCAAAGGAAAGAGAAGATTCGTAG 1121
Query 1138 GTACATGAAGAAGAGGAACGAAAGGAATTTCAACAAGAAAATCAAGTATGCGTGTAGGAA 1197
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1122 GTACATGAAGAAGAGGAACGAAAGAAATTTCAACAAGAAAATCAAGTATGCGTGTAGGAA 1181
Query 1198 AACATTGGCAGATAGTCGACCAAGAGTTAGAGGAAGATTTGCAAAGAATGATGAATTTGG 1257
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1182 AACATTGGCAGATAGTCGACCAAGAGTTAGAGGAAGATTTGCAAAGAATGATGATTTTGG 1241
Query 1258 TGAGCCAAATAGACAAGCTTTTTCAAGCCATCATGATGATGAAGATGAAGACGATATGGG 1317
||| ||||||||||| ||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 1242 TGAACCAAATAGACAGGCTTTTTCAAGCCATCACGATGATGAAGATGAAGAAGATATGGG 1301
Query 1318 AGTGAAGGATGAGGAACAATTGGTAGATTCTTCAGACATTTTTGCACACATTAGTGGAGC 1377
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1302 AGTGAAGGATGAGGAACAATTGGTAGATTCTTCAGACATTTTTGCACACATTAGTGGAGC 1361
Query 1378 AAATTCCTTCAAGTGCAACTACCCAATCCAATCTTGGATTTGAGTTCCAAGTG-CAACAC 1436
||||||||||||||||||||||||||||||||||||||||||||||||| || || |||
Sbjct 1362 CAATTCCTTCAAGTGCAACTACCCAATCCAATCTTGGATTTGAGTTCCAATTGTCA-CAC 1420
Query 1437 CACATATACCTCATGTTTTAACATGAATCTTATAATAGTTACACAAATAGTATTGCTATA 1496
|||||| || ||| || | ||||||||||||| || ||||||||| |||||
Sbjct 1421 CACATA-AC---ATG----AA--T----CTTATAATAGTTATACCAATAGTATTTCTATA 1466
Query 1497 GAGTTATGACTTGTATACTTAGTTTTGTCATGCCCCCAACAAGTTCTGT 1545
||||||| |||||| ||||||||||||||||||||| ||||||||||||
Sbjct 1467 GAGTTATAACTTGTTTACTTAGTTTTGTCATGCCCC-AACAAGTTCTGT 1514
> Ahg919129 jgi|Araly1|919129|scaffold_100410.1
Length=1201
Score = 468 bits (253), Expect = 7e-131
Identities = 591/746 (79%), Gaps = 56/746 (8%)
Strand=Plus/Plus
Query 712 GGTTTTCGAAGAAGATTGTCTTTCTTCAGTCCCAAGTTACAATCTTGG-T--TTGAACCC 768
|||||||||||| |||||||||||||| ||||||||| |||||||||| | | |||||
Sbjct 461 GGTTTTCGAAGAGGATTGTCTTTCTTCTGTCCCAAGTCACAATCTTGGCTCCATAAACCC 520
Query 769 TTCTTGCTCTTTCTT-C-C---GTT-CG---T-CCGGTTTACCGGCGTATATGA--GT-A 815
||||| ||| ||||| | | || | | ||||||||||| | || |||| || |
Sbjct 521 TTCTT-CTCCTTCTTGCTCTTTTTTGGGTAATACCGGTTTACCGACTTACATGACCGTAA 579
Query 816 CC-GG--T-TTATTATCTGCTG-AAAGTAATCTCGGTTATCTT-C-CCGGGAATATTCAT 868
|| || | | || | | | | || |||| |||| | || | |||||| ||| |||
Sbjct 580 CCGGGAATATGATGAACACCGGTTTAG-GATCT-GGTT-T-TTACTCCGGGAGTATCCAT 635
Query 869 GTGGGATCAGAAATCAATAAGC--CACATGATCCACTGATGGACTTTCAAGCTGATAATG 926
| || || | | | | || | ||||||||| | ||||||| |||| ||||||||||
Sbjct 636 CTCGGTTCTG-ATTTTA-AACCATCACATGATCAATTGATGGAAATTCAGGCTGATAATG 693
Query 927 GTGGttttttttGTCCGGATTCC-ATCAAACGTATGTTTAATCCAGAAGATC-TC--CAG 982
|||| || || ||||| || ||| || |||| || || ||||||| ||||| || |
Sbjct 694 GTGGATTGTTCTGTCCAGA-TCCGATTAAACCCATCTTCAATCCAGGAGATCATCATCTC 752
Query 983 AAGGCACTTGGTGGTGGCGCCGAGAACCAGAGCCACTTGGTGACACCTCAAGCTCATCCA 1042
||| ||||| ||| | | ||||||||||| |||| ||||| ||| | | || |||
Sbjct 753 CAGGGACTTGACGGT-G-G-CGAGAACCAGAACCACATGGTGGCACAGCCGGTTCTTCC- 808
Query 1043 GCA-TTA-GGACCGGTCGATATAAACGGTTTAGAAGACTCAACG-TTGAACAAAGTTGGA 1099
||| ||| ||| | | || |||| ||||||||| ||| | | | || ||||||||||||
Sbjct 809 GCAGTTAGGGA-C-G--GAGATAACCGGTTTAGACGACCCGA-GTTTCAACAAAGTTGGA 863
Query 1100 AAACTCTCCCCTGAGCAAAGGAAAGAGAAGATTCGTAGGTACATGAAGAAGAGGAACGAA 1159
||||||||| | ||||| |||||||| ||||||| |||||||||||||||||| |||||
Sbjct 864 AAACTCTCCGCGGAGCAGAGGAAAGAAAAGATTCATAGGTACATGAAGAAGAGAAACGAG 923
Query 1160 AGGAATTTCAACAAGAAAATCAAGTATGCGTGTAGGAAA-ACATTGGCAGATAGTCGACC 1218
|||||||||| |||||||||||||||||| |||| |||| ||||||||||||||||| ||
Sbjct 924 AGGAATTTCAGCAAGAAAATCAAGTATGCATGTA-GAAAGACATTGGCAGATAGTCGTCC 982
Query 1219 AAGAGTTAGAGGAAGATTTGCAAAGAATGATGAATTTGGTGAGCCAAATAGACAAGCTTT 1278
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 983 AAGAGTTAGAGGAAGATTTGCAAAGAATGATGAATTTGGTGAACCAAATAGACAAGCTTG 1042
Query 1279 TTCAAGCCATCATGATGATGAAGATGAAGACGATATGGGAGTGAAGGATGAGGAACAATT 1338
||||||||||||||| | |||||||| || ||| |||| || ||||| || ||||||||
Sbjct 1043 TTCAAGCCATCATGA--A-GAAGATGATGATGATGTGGGGGTAAAGGAAGAAGAACAATT 1099
Query 1339 GGTAGATTCTTCAGACAT-TTTTGCACACATTAGTGGAGCAAATTCCTTCAAGTGCAACT 1397
|| |||||||| ||||| |||| ||||||| ||||| | || || ||||| ||||| |
Sbjct 1100 AGTTGATTCTTCGGACATATTTT-CACACATAAGTGGTGTGAACTCTTTCAAATGCAATT 1158
Query 1398 ACCCAATCCAATCTTGGATTTGAGTT 1423
| ||||| || |||||||||||||||
Sbjct 1159 ATCCAATTCAGTCTTGGATTTGAGTT 1184
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65210499440
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5