BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G33350.1 Length=1738 Score E Sequences producing significant alignments: (Bits) Value Ahg482277 jgi|Araly1|482277|fgenesh2_kg.4__1337__AT2G33350.1 2185 0.0 Ahg919129 jgi|Araly1|919129|scaffold_100410.1 468 7e-131 > Ahg482277 jgi|Araly1|482277|fgenesh2_kg.4__1337__AT2G33350.1 Length=1668 Score = 2185 bits (1183), Expect = 0.0 Identities = 1434/1549 (93%), Gaps = 41/1549 (3%) Strand=Plus/Plus Query 3 TATTTGAATTTCTTCCATGGATTTTCTTGTTCATCATACATCACTCATTCCAATATTATT 62 ||||||||||||||| ||||||||||||| | ||||||||||| ||||||||||||||| Sbjct 1 TATTTGAATTTCTTCGATGGATTTTCTTG-T--TCATACATCACCCATTCCAATATTATT 57 Query 63 CCACAAATCATCCTTGAAGCCTCGTTCATTAATTTTCTTGCTATAATTCATA-TTTTCTC 121 ||| ||| ||||| ||||||||||| |||||||||||||||||||||||| | |||||| Sbjct 58 CCATAAAGCATCCGTGAAGCCTCGTCCATTAATTTTCTTGCTATAATTCA-ACTTTTCTG 116 Query 122 GGGAATTTTCTTTA-TTTTCCCAGAAAGTTTTCGCATTAACATTGGAGATATACAAAG-A 179 |||||||||||||| |||||||||||| |||||||| ||||||||||||||||||| | Sbjct 117 GGGAATTTTCTTTATTTTTCCCAGAAAAAATTCGCATTTACATTGGAGATATACAAAGAA 176 Query 180 ACACAAACATGTTGCAAGACATGATCTCGTCTCACTCTCA-CGAT-CAGCTTTCCATCGA 237 || ||||||||||||||||| |||||||||||||| ||| | | || | | || || Sbjct 177 AC-CAAACATGTTGCAAGACGTGATCTCGTCTCACGATCAGCCTTCCATC-GT-AATTGA 233 Query 238 TGATATCACGAGCCCTCTTAGTGCTCAGATCTTCGATTTCTGCGATCCACAACTCTTTCA 297 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 234 TGATATCACGAGCCCTCTTAGTGCTCAGATCTTCGATTTCTGCGATCCACAACTCTTTCA 293 Query 298 AGAAACCTTTAATCAATCCTCTGAAGTCACCTCTACTTCAAACATTCTTGAGAAATCCGG 357 |||||||||||||||| || |||||||||||||||||||||||||||| ||||||||||| Sbjct 294 AGAAACCTTTAATCAAACCACTGAAGTCACCTCTACTTCAAACATTCTCGAGAAATCCGG 353 Query 358 AAGCTTCCATTCcaacactaacaccaccacaacaactgagaacagtaacaacaacaacaa 417 ||||||||||||||||||| ||||| |||||||| ||| | |||||| ||||| Sbjct 354 AAGCTTCCATTCCAACACT---ACCACAACAACAAC----AAC--TGACAACAGTAACAA 404 Query 418 caacaagaacacaaaccttcaagacgatgaagatgacaacaacaacaCGGATCTGTCCAT 477 ||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| Sbjct 405 CAACAAGAACACAAAACTTCAAGACGATGAAGATGACAACAACAACACGGATCTATCCAT 464 Query 478 AATCTTTGATTCACAAGAAGATTTCGAAAACGATATAACGGCTTCAATCGATTTCTCATC 537 ||||||||||||||||||||||||||||||||| |||||||| ||||| ||||||||||| Sbjct 465 AATCTTTGATTCACAAGAAGATTTCGAAAACGACATAACGGCCTCAATTGATTTCTCATC 524 Query 538 ATCTTCACTGCAATATCCAGTCATCGATCATCTCCTCACGGCAATAAGCCAAGACCAGTT 597 ||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 525 ATCTTCACTCCAATATCCAGTCATCGATCATCTCCTCACGGCAACAAGCCAAGACCAGTT 584 Query 598 TGATTTCTCATCAGGTCTCCAAGTTATTCATCAGCCTCCTAACATTTCATACTCTGGAGA 657 ||||||||||||||| |||||| |||||||||||||| ||||||||||| |||||||||| Sbjct 585 TGATTTCTCATCAGGACTCCAACTTATTCATCAGCCTGCTAACATTTCACACTCTGGAGA 644 Query 658 TCCTCTGTCTCTATCGGCGATTTCCTCTCTAGCTCCTCCTCCCTTACAATCAGGGGTTTT 717 |||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||| Sbjct 645 CCCTCTGTCTCTATCGGCGGTTTCCTCTCTAGCTCCTCCTCCTTTACAATCAGGGGTTTT 704 Query 718 CGAAGAAGATTGTCTTTCTTCAGTCCCAAGTTACAATCTTGGTTTGAACCCTTCTTGCTC 777 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 705 CGAAGAAGATTGTCTTTCTTCAGTCCCAAGTTACAATCTTGGCTTGAACCCTTCTTGCTC 764 Query 778 TTTCTTCCGTTCGTCCGGTTTACCGGCGTATATGAGTACCGGTTTATTATCTGCTGAAAG 837 ||||||||| |||||||||||||| |||||||||| ||||||||||||||||||||||| Sbjct 765 CTTCTTCCGTACGTCCGGTTTACCGACGTATATGAGCACCGGTTTATTATCTGCTGAAAG 824 Query 838 TAATCTCGGTTATCTTCCCGGGAATATTCATGTGGGATCAGAAATCAATAAGCCACATGA 897 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 825 TAATCTCGGTTATCTTCCCGGGAATATTCATGTGGGATCAGAAATCAATAAGCCACATAA 884 Query 898 TCCACTGATGGACTTTCAAGCTGATAATGGTGGttttttttGTCCGGATTCCATCAAACG 957 |||| ||||||||||||||||||||||||||||||| |||||||||| |||||| ||||| Sbjct 885 TCCATTGATGGACTTTCAAGCTGATAATGGTGGTTTGTTTTGTCCGGGTTCCATGAAACG 944 Query 958 TATGTTTAATCCAGAAGATCTCCAGAAGGCACTTGGTGGTGGCGCCGAGAACCAGAGCCA 1017 ||| |||||||||||||||||||||||||||| | |||||||| ||||||||||||| | Sbjct 945 TATCTTTAATCCAGAAGATCTCCAGAAGGCAC-T--TGGTGGCGTCGAGAACCAGAGCAA 1001 Query 1018 CTTGGTGACACCTCAAGCTCATCCAGCATTAGGACCGGTCGATATAAACGGTTTAGAAGA 1077 ||||||| ||||||| |||||||||||||||||| ||||||| ||||||||||||||||| Sbjct 1002 CTTGGTGGCACCTCAGGCTCATCCAGCATTAGGAACGGTCGAGATAAACGGTTTAGAAGA 1061 Query 1078 CTCAACGTTGAACAAAGTTGGAAAACTCTCCCCTGAGCAAAGGAAAGAGAAGATTCGTAG 1137 |||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 1062 TTCAACGATGAACAAAGTTGGAAAACTATCCCCTGAGCAAAGGAAAGAGAAGATTCGTAG 1121 Query 1138 GTACATGAAGAAGAGGAACGAAAGGAATTTCAACAAGAAAATCAAGTATGCGTGTAGGAA 1197 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 1122 GTACATGAAGAAGAGGAACGAAAGAAATTTCAACAAGAAAATCAAGTATGCGTGTAGGAA 1181 Query 1198 AACATTGGCAGATAGTCGACCAAGAGTTAGAGGAAGATTTGCAAAGAATGATGAATTTGG 1257 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 1182 AACATTGGCAGATAGTCGACCAAGAGTTAGAGGAAGATTTGCAAAGAATGATGATTTTGG 1241 Query 1258 TGAGCCAAATAGACAAGCTTTTTCAAGCCATCATGATGATGAAGATGAAGACGATATGGG 1317 ||| ||||||||||| ||||||||||||||||| ||||||||||||||||| |||||||| Sbjct 1242 TGAACCAAATAGACAGGCTTTTTCAAGCCATCACGATGATGAAGATGAAGAAGATATGGG 1301 Query 1318 AGTGAAGGATGAGGAACAATTGGTAGATTCTTCAGACATTTTTGCACACATTAGTGGAGC 1377 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1302 AGTGAAGGATGAGGAACAATTGGTAGATTCTTCAGACATTTTTGCACACATTAGTGGAGC 1361 Query 1378 AAATTCCTTCAAGTGCAACTACCCAATCCAATCTTGGATTTGAGTTCCAAGTG-CAACAC 1436 ||||||||||||||||||||||||||||||||||||||||||||||||| || || ||| Sbjct 1362 CAATTCCTTCAAGTGCAACTACCCAATCCAATCTTGGATTTGAGTTCCAATTGTCA-CAC 1420 Query 1437 CACATATACCTCATGTTTTAACATGAATCTTATAATAGTTACACAAATAGTATTGCTATA 1496 |||||| || ||| || | ||||||||||||| || ||||||||| ||||| Sbjct 1421 CACATA-AC---ATG----AA--T----CTTATAATAGTTATACCAATAGTATTTCTATA 1466 Query 1497 GAGTTATGACTTGTATACTTAGTTTTGTCATGCCCCCAACAAGTTCTGT 1545 ||||||| |||||| ||||||||||||||||||||| |||||||||||| Sbjct 1467 GAGTTATAACTTGTTTACTTAGTTTTGTCATGCCCC-AACAAGTTCTGT 1514 > Ahg919129 jgi|Araly1|919129|scaffold_100410.1 Length=1201 Score = 468 bits (253), Expect = 7e-131 Identities = 591/746 (79%), Gaps = 56/746 (8%) Strand=Plus/Plus Query 712 GGTTTTCGAAGAAGATTGTCTTTCTTCAGTCCCAAGTTACAATCTTGG-T--TTGAACCC 768 |||||||||||| |||||||||||||| ||||||||| |||||||||| | | ||||| Sbjct 461 GGTTTTCGAAGAGGATTGTCTTTCTTCTGTCCCAAGTCACAATCTTGGCTCCATAAACCC 520 Query 769 TTCTTGCTCTTTCTT-C-C---GTT-CG---T-CCGGTTTACCGGCGTATATGA--GT-A 815 ||||| ||| ||||| | | || | | ||||||||||| | || |||| || | Sbjct 521 TTCTT-CTCCTTCTTGCTCTTTTTTGGGTAATACCGGTTTACCGACTTACATGACCGTAA 579 Query 816 CC-GG--T-TTATTATCTGCTG-AAAGTAATCTCGGTTATCTT-C-CCGGGAATATTCAT 868 || || | | || | | | | || |||| |||| | || | |||||| ||| ||| Sbjct 580 CCGGGAATATGATGAACACCGGTTTAG-GATCT-GGTT-T-TTACTCCGGGAGTATCCAT 635 Query 869 GTGGGATCAGAAATCAATAAGC--CACATGATCCACTGATGGACTTTCAAGCTGATAATG 926 | || || | | | | || | ||||||||| | ||||||| |||| |||||||||| Sbjct 636 CTCGGTTCTG-ATTTTA-AACCATCACATGATCAATTGATGGAAATTCAGGCTGATAATG 693 Query 927 GTGGttttttttGTCCGGATTCC-ATCAAACGTATGTTTAATCCAGAAGATC-TC--CAG 982 |||| || || ||||| || ||| || |||| || || ||||||| ||||| || | Sbjct 694 GTGGATTGTTCTGTCCAGA-TCCGATTAAACCCATCTTCAATCCAGGAGATCATCATCTC 752 Query 983 AAGGCACTTGGTGGTGGCGCCGAGAACCAGAGCCACTTGGTGACACCTCAAGCTCATCCA 1042 ||| ||||| ||| | | ||||||||||| |||| ||||| ||| | | || ||| Sbjct 753 CAGGGACTTGACGGT-G-G-CGAGAACCAGAACCACATGGTGGCACAGCCGGTTCTTCC- 808 Query 1043 GCA-TTA-GGACCGGTCGATATAAACGGTTTAGAAGACTCAACG-TTGAACAAAGTTGGA 1099 ||| ||| ||| | | || |||| ||||||||| ||| | | | || |||||||||||| Sbjct 809 GCAGTTAGGGA-C-G--GAGATAACCGGTTTAGACGACCCGA-GTTTCAACAAAGTTGGA 863 Query 1100 AAACTCTCCCCTGAGCAAAGGAAAGAGAAGATTCGTAGGTACATGAAGAAGAGGAACGAA 1159 ||||||||| | ||||| |||||||| ||||||| |||||||||||||||||| ||||| Sbjct 864 AAACTCTCCGCGGAGCAGAGGAAAGAAAAGATTCATAGGTACATGAAGAAGAGAAACGAG 923 Query 1160 AGGAATTTCAACAAGAAAATCAAGTATGCGTGTAGGAAA-ACATTGGCAGATAGTCGACC 1218 |||||||||| |||||||||||||||||| |||| |||| ||||||||||||||||| || Sbjct 924 AGGAATTTCAGCAAGAAAATCAAGTATGCATGTA-GAAAGACATTGGCAGATAGTCGTCC 982 Query 1219 AAGAGTTAGAGGAAGATTTGCAAAGAATGATGAATTTGGTGAGCCAAATAGACAAGCTTT 1278 |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 983 AAGAGTTAGAGGAAGATTTGCAAAGAATGATGAATTTGGTGAACCAAATAGACAAGCTTG 1042 Query 1279 TTCAAGCCATCATGATGATGAAGATGAAGACGATATGGGAGTGAAGGATGAGGAACAATT 1338 ||||||||||||||| | |||||||| || ||| |||| || ||||| || |||||||| Sbjct 1043 TTCAAGCCATCATGA--A-GAAGATGATGATGATGTGGGGGTAAAGGAAGAAGAACAATT 1099 Query 1339 GGTAGATTCTTCAGACAT-TTTTGCACACATTAGTGGAGCAAATTCCTTCAAGTGCAACT 1397 || |||||||| ||||| |||| ||||||| ||||| | || || ||||| ||||| | Sbjct 1100 AGTTGATTCTTCGGACATATTTT-CACACATAAGTGGTGTGAACTCTTTCAAATGCAATT 1158 Query 1398 ACCCAATCCAATCTTGGATTTGAGTT 1423 | ||||| || ||||||||||||||| Sbjct 1159 ATCCAATTCAGTCTTGGATTTGAGTT 1184 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 65210499440 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5