BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G33360.1
Length=2571
Score E
Sequences producing significant alignments: (Bits) Value
Ahg933921 jgi|Araly1|933921|scaffold_401909.1 2937 0.0
> Ahg933921 jgi|Araly1|933921|scaffold_401909.1
Length=1848
Score = 2937 bits (1590), Expect = 0.0
Identities = 1772/1859 (95%), Gaps = 16/1859 (1%)
Strand=Plus/Plus
Query 490 TTTGAGTATAGCGAGCGGAACGATGGGAAGTGTTTCTCCTGATGCTCAGAAGGATGATCT 549
|||| |||||||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 1 TTTGGGTATAGCGAGCGGAACAATGGGGAGTGTTTCTCCTGATGCTCAGAAGGATGATCC 60
Query 550 TGAGCTTGAAGATTCATTGAACATTGATGAGAATCTGTCTGGGGGAAATGGCTTATTGAA 609
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 61 TGAGCTTGAAGATTCATTGAACATTGATGAGAATCTGTCTGGGGAAAATGGCTTATTGAA 120
Query 610 GTCAGGGAACTTGTTGAGCCAGAAAAGACAGCAATGTAGTTTAGTTTCAAACAGCGGAAA 669
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 121 GTCAGTGAACTTGTTGAGCCAGAAAAGACAGCAATGTAGTTTAGTTTCAAACAGCGGAGA 180
Query 670 GTGGTTACAGATTGTTAAAAACGGTCCCAAGGGATCTTTTTCTCGTGCCACTAGTTTCTT 729
||||||||||||||||||| ||||||||||||| || |||||||||||||||||||||||
Sbjct 181 GTGGTTACAGATTGTTAAAGACGGTCCCAAGGGGTCGTTTTCTCGTGCCACTAGTTTCTT 240
Query 730 CGATAACAAGATCCCAAGGCAGTTGGTGTCAGTAGACGAGAAGTATCTCCGTCGATGCCT 789
||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||
Sbjct 241 CGATAACAAGATCCCAAGGCAGTTGGTATCAATAGACGAGAAGTATCTCCGTCGATGCCT 300
Query 790 TGACCTGATTAATATCAGTGCGTTTAAGTCAGCCAGTTGCAGCCTTTCTTTGAATCTTGT 849
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 301 CGACCTGATTAATATCAGTGCGTTTAAGTCAGCCAGTTGTAGCCTTTCTTTGAATCTTGT 360
Query 850 AGGATCAAAGATGAGTTTGTCTTCACGTCGCTTCGATTTACCTGTTATCCCCAAAGAAAA 909
||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 361 AGGATCAAAGATGAGTTTGTCTTCACGTCACTTCGATTCACCTGTTATCCCCAAAGAAAA 420
Query 910 TGTTGCTCGCCTTGTGTTTGATCTTCCGTTGGTAGATGATTCAGGCAGTCCAGTGATTAG 969
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 421 TGTTGCTCGCCTTGTGTTTGATCTTCCGTTGGTAGATGATTCTGGCAGTCCAGTGATCAG 480
Query 970 CCGTGCAATTATAGGTTGCAAGAGGGTTACATATATGCTTGATAAGCCTACGTTACACAG 1029
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
Sbjct 481 CCGTGCAATTATAGGTTGCAAGAGGGTTACATATATGCTTGATAAGCCTTTGTTACAC-G 539
Query 1030 -TCTCGAAGCATTAGATGGTGATGGTAAT-AATA-TCGGGACAAGGCGAGACCATAATGG 1086
|||||||| ||| ||||| |||||| || |||| | |||||||||||||||||||||||
Sbjct 540 ATCTCGAAGGATTGGATGGGGATGGT-ATGAATAGT-GGGACAAGGCGAGACCATAATGG 597
Query 1087 TGAAAGCGAGTTGGTTTCATATGATGTTGTGAGGAAGATAGAGGaaaaaaaCACCCCGGA 1146
||||| |||||||||||||| ||||||||| || ||||||||||||||| ||||||||||
Sbjct 598 TGAAAACGAGTTGGTTTCATGTGATGTTGTCAGAAAGATAGAGGAAAAAGACACCCCGGA 657
Query 1147 TTCACAGTTTCTGAGTTATCATTCTGGAAACATGCCCCGAAAGGCAGTTTCTTTATCAAG 1206
|| ||||||| ||||||||| |||||||||||||||| ||||||||| ||||| |||||
Sbjct 658 TTTGCAGTTTCAGAGTTATCAATCTGGAAACATGCCCCAAAAGGCAGTCTCTTTGTCAAG 717
Query 1207 CACAAATTCATTGAGTTCTTCTTCTTCTGAGCAATCTTCTTCCTCG-TGGTCTCCATCTT 1265
|||||||||| |||||||||| ||||||||||||||||||||| | |||||||| ||||
Sbjct 718 CACAAATTCAATGAGTTCTTCCTCTTCTGAGCAATCTTCTTCC-GGTTGGTCTCCGTCTT 776
Query 1266 CATCAGTTTCTCAAGGAACACTTCAATTCACTATGAAAGACAACAAGACGCCTCATTTTG 1325
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 777 CATCAGTTTCTCAAGGAACACTTCAATTCATTATGAAAGACAACAAGACGCCTCATTTTG 836
Query 1326 TTTTCTCACTGGATGATCAGAAAGAGATCTATGTAGCTAGCTTAAGCACTACTAGTGTTG 1385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 837 TTTTCTCACTGGATGATCAGAAAGAGATCTATGTAGCTAGCTTAAGCACTACTAGTGTTG 896
Query 1386 GGTCAGGTTTCGACCGTAGTTCTCTAGACTATTCGTATTTGATCCATTTGAAGAAAGGTC 1445
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 897 GGTCAGGTTTCGACCGTAGTTCTCTAGACTATTCGTATTTGATCCATTTGAAGAAAGGCC 956
Query 1446 GCGGATCTGAGCCGCAGCATTTGGTTGGTAAACTAAAGGTATCAACTTTGTTTTCTGTCT 1505
||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 957 GCGGAGCTGAGCTGCAGCATTTGGTTGGTAAACTAAAGGTATCAACTTTGTTTTCTGTCT 1016
Query 1506 CGTCCACGAATGAAAAAACTGTAGAGAGACAGTTTGTTCTATTCAGCAGTGGTGGAAATC 1565
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1017 CGTCCACGAATGAAAAAACTGTAGAGAGACAGTTTGTTCTATTCAGCAGTGGTGGGAATC 1076
Query 1566 CGCAGTTACCGTGCCACAAAGATATTAGGAAAAACAGAGGATTGCCTAAGAAAGTCGTTG 1625
||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 1077 CGCAGTTACAATGCCACAACGATATTAGGAAAAACAGAGGATTGCCTAAGAAAGTCGTCG 1136
Query 1626 ATGCTCTCAAAAGCACCAAACGCACTTCAAGGCAAAGAAGTATCTCAAGATTCAGTAGAA 1685
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1137 ATGCTCTCAAAAGCACCAAACGCACTTCAAGGCAAAGAAGTATCTCAAGATTCAGCAGAA 1196
Query 1686 CAAGCTCCATACCGGATTTTTGTTCTTGGGAGCCATTTCAAGAACATGACAGCGATCTTG 1745
||||||||||||| || |||||||||||||||||||||||||||||||| | ||||||||
Sbjct 1197 CAAGCTCCATACCAGAATTTTGTTCTTGGGAGCCATTTCAAGAACATGAAAACGATCTTG 1256
Query 1746 AACCCATAAGTTTACTGGATAATGACCTTCCACCAAATCTTGAAACCTCAGCTGTTGTTG 1805
||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1257 AACCCGTAAGTTTACTGGATAACGACCTTCCACCAAATCTTGAAACCTCAGCTGTTGTTG 1316
Query 1806 TGAGAGAACAGTTTCCAGTGgaagaagaagaagaagaagaagTCGAAAAAGTTGGAGGCT 1865
|||||||||||||||| ||||||||||||||||||| ||||||||||||||||||
Sbjct 1317 TGAGAGAACAGTTTCCTGTGGAAGAAGAAGAAGAAG------TCGAAAAAGTTGGAGGCT 1370
Query 1866 GGGGCATGAAGTTTCTCAAGAAAATTCCCTTAGCTCGAACCAAGGATGCTTCTAAATGTT 1925
||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||
Sbjct 1371 GGGGCATGAAGTTTCTCAAGAAAATGCCCTTAGCTCGAACCAAGGATGCTTCTAAAAATT 1430
Query 1926 CTAAGCATTCCACAAGCATAGATGTTGTGATTCCTTTAGGGATTCACGGAGGGCCGAGAA 1985
|||||| ||| ||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1431 CTAAGCTTTCGACAAGCATAGATGTTGTGATTCCTTCAGGGATTCACGGAGGGCCGAGAA 1490
Query 1986 ATAGAAACGGTGGTCCTTCGAGCTTGATTCAGAGATGGAAATCCGGTGGATGCTGTGATT 2045
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1491 ATAGAAACGGTGGTCCTTCGAGCTTGATTCAGAGATGGAAATCCGGCGGATGCTGTGATT 1550
Query 2046 GCTCTGGATGGGACTTGGGTTGCCCCTTAACCGTCCTTAAAGGCCAAGCGCGAAAAGACC 2105
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1551 GCTCTGGATGGGACTTGGGTTGCCCCTTAACCGTCCTTAAAGGCCAAGCGCGAAAAGACC 1610
Query 2106 AAAGTGAAGGCCAATGCAATCTTTTTGAGCTTTTCACAGAGGGATTGATGCAGGGAAGTC 2165
||| ||||||||||||||||||||||||||| |||||||||||| |||||||||||||||
Sbjct 1611 AAAATGAAGGCCAATGCAATCTTTTTGAGCTCTTCACAGAGGGAATGATGCAGGGAAGTC 1670
Query 2166 CTGGACTAAGGATCATGAATGTTCGAGATGGTCTCTACTTT-GTCCAGTCTCAAGCAAAG 2224
||||| |||||||||||||||||||||| ||||||| ||| ||||| ||||||||||||
Sbjct 1671 CTGGATTAAGGATCATGAATGTTCGAGACGGTCTCTT-TTTCGTCCAATCTCAAGCAAAG 1729
Query 2225 ATATCAGTTTTGCAATCTTTTTCAATTGCTTTAGCATACATTCATAGCCAAAGCCAGAGA 2284
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1730 ATATCTGTTTTGCAATCTTTTTCAATTGCTTTAGCATACATTCATAGCCAAAGCCAGAGA 1789
Query 2285 CTCCGGCCATGGTCGTCAAAGAAGTGTACAGAAGCTTAACTAGCAAAAGAAAGGATTGC 2343
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1790 CTCCGGCCATGGTCGTCAAAGAAGTGTACAGAAGCTTAACTAGCAAAAGAAAGGATTGC 1848
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 96939673525
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5