BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G33370.1
Length=664
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482278 jgi|Araly1|482278|fgenesh2_kg.4__1338__AT2G33370.1 941 0.0
Ahg470426 jgi|Araly1|470426|fgenesh2_kg.1__380__AT1G04480.1 514 3e-145
> Ahg482278 jgi|Araly1|482278|fgenesh2_kg.4__1338__AT2G33370.1
Length=654
Score = 941 bits (509), Expect = 0.0
Identities = 615/662 (93%), Gaps = 24/662 (4%)
Strand=Plus/Plus
Query 1 AATCCTTTCTTCTCCTTCATTTTTCTACTTCGATCAGACGCC--AA-ACATCAGAAGCCC 57
||||| ||||||||| |||||||||| ||||||||||||||| || |||||||||||||
Sbjct 1 AATCCCTTCTTCTCCGTCATTTTTCTTCTTCGATCAGACGCCATAACACATCAGAAGCCC 60
Query 58 TAGAGCTTGAGCCGTCGAAAATGTCGAAGCGAGGACGTGGAGGAACGTCTGGTAACAAAT 117
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TAGAGCTTGAGCCGTCGGAAATGTCGAAGCGAGGACGTGGAGGAACGTCTGGTAACAAAT 120
Query 118 TCAGGATGTCACTTGGTCTGCCCGTTGCAGCCACAGTGAACTGTGCAGACAACACTGGTG 177
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 121 TCAGGATGTCACTTGGTCTGCCCGTTGCAGCCACAGTGAACTGTGCAGACAACACAGGTG 180
Query 178 CTAAGAACCTTTACATCATCTCTGTTAAAGGAATCAAAGGTCGTCTCAATCGGTTACCTT 237
||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 181 CTAAGAACCTTTACATCATTTCGGTTAAAGGAATCAAAGGTCGTCTCAATCGGTTACCTT 240
Query 238 CTGCTTGTGTTGGTGACATGGTTATGGCCACTGTCAAGAAAGGTAAACCAGACCTCAGGA 297
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 241 CTGCTTGTGTTGGTGACATGGTTATGGCCACTGTCAAGAAAGGTAAGCCAGACCTCAGGA 300
Query 298 AAAAGGTTCTTCCTGCTGTGATTGTTAGGCAACGTAAGCCATGGCGCCGAAAGGACGGTG 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 AAAAGGTTCTTCCTGCTGTGATTGTTAGGCAACGTAAGCCATGGCGCCGAAAGGACGGTG 360
Query 358 TTTTCATGTACTTTGAAGATAATGCTGGAGTGATTGTGAACCCTAAGGGAGAAATGAAAG 417
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 361 TTTTCATGTACTTTGAAGATAATGCGGGAGTGATTGTGAACCCTAAGGGAGAAATGAAAG 420
Query 418 GTTCTGCAATTACTGGACCTATTGGGAAAGAGTGTGCGGATCTCTGGCCAAGGATTGCTA 477
||||||| ||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 421 GTTCTGCGATTACTGGACCCATTGGGAAAGAGTGTGCAGATCTCTGGCCAAGGATTGCTA 480
Query 478 GTGCTGCTAACGCCATTGTCT--G--AAGATCATTTATCACTTTTGCTGGTTATGTATCT 533
|||||||||| |||||||||| | |||||||| |||||||||||||||||||||||||
Sbjct 481 GTGCTGCTAATGCCATTGTCTAAGTCAAGATCATCTATCACTTTTGCTGGTTATGTATCT 540
Query 534 GTCTTCAACGAAACGCGAAATAGTTGGTGTTTTGAGTGTTTTAAGTAGAGA--CGACAAT 591
|| || || ||||||||||| ||||||| |||||||||||||||| | ||||
Sbjct 541 GT-------GATACTCGAAATAGTTGATGTTTTGGGTGTTTTAAGTAGAGAGACCACAAC 593
Query 592 C-TTTTGTGAGCTTCAGACATATTTC---CAG-T-TT-CTAAGAGATTTTGCTTAGATTT 644
| |||||||||||||||||| ||||| | | | || ||||||||||||| |||| |||
Sbjct 594 CCTTTTGTGAGCTTCAGACAAATTTCAGTCTGGTGTTTCTAAGAGATTTTGTTTAG-TTT 652
Query 645 TT 646
||
Sbjct 653 TT 654
> Ahg470426 jgi|Araly1|470426|fgenesh2_kg.1__380__AT1G04480.1
Length=593
Score = 514 bits (278), Expect = 3e-145
Identities = 389/443 (88%), Gaps = 6/443 (1%)
Strand=Plus/Plus
Query 67 AGCCGTCGAA-AATGTCGAAGCGAGGACGTGGAGGAACGTCTGGTAACAAATTCAGGATG 125
||||||| || ||||||||||||||| |||||||| || |||||||||||||||||||||
Sbjct 5 AGCCGTC-AACAATGTCGAAGCGAGGGCGTGGAGGTACCTCTGGTAACAAATTCAGGATG 63
Query 126 TCACTTGGTCTGCCCGTTGCAGCCACAGTGAACTGTGCAGACAACACTGGTGCTAAGAAC 185
||||| ||||| || || || || || || |||||||| || ||||| |||||||||||
Sbjct 64 TCACTGGGTCTTCCAGTGGCGGCGACGGTTAACTGTGCCGATAACACCGGTGCTAAGAAT 123
Query 186 CTTTACATCATCTCTGTTAAAGGAATCAAAGGTCGTCTCAATCGGTTACCTTCTGCTTGT 245
|| |||||||| || || ||||| |||||||||||||| ||||| ||||||||||||||
Sbjct 124 CTGTACATCATTTCGGTGAAAGGTATCAAAGGTCGTCTTAATCGATTACCTTCTGCTTGC 183
Query 246 GTTGGTGACATGGTTATGGCCACTGTCAAGAAA-GGTAAACCAGACCTCAGGAAAAAGGT 304
|| || |||||||| |||||||| ||||| ||| ||||| || || ||| ||||||||||
Sbjct 184 GTCGGCGACATGGTGATGGCCACCGTCAA-AAAGGGTAAGCCTGATCTCCGGAAAAAGGT 242
Query 305 TCTTCCTGCTGTGATTGTTAGGCAACGTAAGCCATGGCGCCGAAAGGACGGTGTTTTCAT 364
||||||||| || || || |||||||| || ||||||||||||||||| ||||| |||||
Sbjct 243 TCTTCCTGCCGTCATCGTCAGGCAACGCAAACCATGGCGCCGAAAGGATGGTGTCTTCAT 302
Query 365 GTACTTTGAAGATAATGCTGGAGTGATTGTGAACCCTAAGGGAGAAATGAAAGGTTCTGC 424
|||||| ||||||||||||||||| ||||| ||||| |||||||||||||||||||||||
Sbjct 303 GTACTTCGAAGATAATGCTGGAGTCATTGTCAACCCCAAGGGAGAAATGAAAGGTTCTGC 362
Query 425 AATTACTGGACCTATTGGGAAAGAGTGTGCGGATCTCTGGCCAAGGATTGCTAGTGCTGC 484
||||||||| |||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 363 AATTACTGGTCCTATTGGGAAAGAGTGTGCTGATCTTTGGCCAAGGATTGCTAGTGCTGC 422
Query 485 TAACGCCATTGTCTGAA-GATCA 506
|| |||||||||| || |||||
Sbjct 423 CAATGCCATTGTCT-AATGATCA 444
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24360543963
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5