BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G33380.1 Length=961 Score E Sequences producing significant alignments: (Bits) Value Ahg482279 jgi|Araly1|482279|fgenesh2_kg.4__1339__AT2G33380.1 1171 0.0 > Ahg482279 jgi|Araly1|482279|fgenesh2_kg.4__1339__AT2G33380.1 Length=818 Score = 1171 bits (634), Expect = 0.0 Identities = 718/757 (95%), Gaps = 11/757 (1%) Strand=Plus/Plus Query 91 AGAGAGAATGGCAGGAGAGGCAGAGGCTTTGGCCACGACGGCACCGTTAGCTCCGGTCAC 150 |||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 64 AGAGAGTATGGCAGGAGAGGCAGAGGCTTTGGCCACGACGGCGCCGTTAGCTCCGGTCAC 123 Query 151 CAGTCAGCGAAAAGTACGGAACGATTTGGAGGAAACATTACCAAAACCATACATGGCAAG 210 ||||||||||||||||||||| |||||||||||||| |||||||||||||| |||||||| Sbjct 124 CAGTCAGCGAAAAGTACGGAATGATTTGGAGGAAACGTTACCAAAACCATATATGGCAAG 183 Query 211 AGCATTAGCAGCTCCAGATACAGAGCATCCGAATGGAACAGAAGGTCACGATAGCAAAGG 270 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| Sbjct 184 AGCATTAGCAGCTCCAGATACAGAGCATCCGAATGGAACAGAAGGTCACGACAGCAGAGG 243 Query 271 AATGAGTGTTATGCAACAACATGTTGCTTTCTTCGACCAAAACGACGATGGAATCGTCTA 330 |||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| Sbjct 244 AATGAGTGTTATGCAACAACATGTCGCTTTCTTCGACCAAAACGACGACGGAATCGTCTA 303 Query 331 TCCTTGGGAGACTTATAAGGGATTTCGTGACCTTGGTTTCAACCCAATTTCCTCTATCTT 390 ||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 304 TCCGTGGGAGACTTATAAGGGATTTCGTGACCTCGGTTTCAACCCAATTTCCTCTATCTT 363 Query 391 TTGGACCTTACTCATAAACTTAGCGTTCAGCTACGTTACACTTCCGAGTTGGGTGCCATC 450 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 364 TTGGACCTTACTCATAAACTTAGCGTTTAGCTACGTTACACTTCCGAGTTGGGTGCCATC 423 Query 451 ACCATTATTGCCGGTTTATATCGACAACATACACAAAGCCAAGCATGGGAGTGATTCGAG 510 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 424 ACCATTATTGCCTGTTTATATCGACAACATACACAAAGCCAAGCATGGGAGTGATTCGAG 483 Query 511 CACCTATGACACCGAAGGAAGGTATGTCCCAGTTAACCTCGAGAACATATTTAGCAAATA 570 |||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||| Sbjct 484 CACCTATGACACCGAAGGAAGGTATGTCCCGGTTAACCTCGAGAACGTATTTAGCAAATA 543 Query 571 CGCGCTAACGGTTAAAGATAAGTTATCATTTAAAGAGGTTTGGAATGTAACCGAGGGAAA 630 ||||||||||||||| |||||| |||| |||||||||||||||||||||||||||||||| Sbjct 544 CGCGCTAACGGTTAAGGATAAGCTATCTTTTAAAGAGGTTTGGAATGTAACCGAGGGAAA 603 Query 631 TCGAATGGCAATCGATCCTTTTGGATGGCTTTCAAACAAAGTTGAATGGATACTACTCTA 690 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 604 TCGAATGGCAATCGATCCTTTTGGATGGCTTTCAAACAAAGTTGAATGGATACTACTCTA 663 Query 691 TATTCTTGCTAAGGACGAAGATGGTTTCCTATCTAAAGAAGCTGTGAGAGGTTGCTTTGA 750 |||||| || |||||||| || |||||| | ||||||||||||||||||||||||||||| Sbjct 664 TATTCTGGCAAAGGACGAGGAAGGTTTCATTTCTAAAGAAGCTGTGAGAGGTTGCTTTGA 723 Query 751 TGGAAGTTTATTTGAACAAATTGC---------CAAAGAGAGGGCCAATTCTCGCAAACA 801 |||||| ||||||||||| ||||| ||||||||||||||||||||||||||| Sbjct 724 TGGAAGCTTATTTGAACATATTGCTAAAAAGAACAAAGAGAGGGCCAATTCTCGCAAACA 783 Query 802 AGACTAAGAATGTGTGTGTTTGGTTAGCGAATAAAGC 838 |||||||||| | | ||||||||||||||||||||| Sbjct 784 AGACTAAGAAAAT-T-TGTTTGGTTAGCGAATAAAGC 818 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 35683050312 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5