BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G33380.1
Length=961
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482279 jgi|Araly1|482279|fgenesh2_kg.4__1339__AT2G33380.1 1171 0.0
> Ahg482279 jgi|Araly1|482279|fgenesh2_kg.4__1339__AT2G33380.1
Length=818
Score = 1171 bits (634), Expect = 0.0
Identities = 718/757 (95%), Gaps = 11/757 (1%)
Strand=Plus/Plus
Query 91 AGAGAGAATGGCAGGAGAGGCAGAGGCTTTGGCCACGACGGCACCGTTAGCTCCGGTCAC 150
|||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 64 AGAGAGTATGGCAGGAGAGGCAGAGGCTTTGGCCACGACGGCGCCGTTAGCTCCGGTCAC 123
Query 151 CAGTCAGCGAAAAGTACGGAACGATTTGGAGGAAACATTACCAAAACCATACATGGCAAG 210
||||||||||||||||||||| |||||||||||||| |||||||||||||| ||||||||
Sbjct 124 CAGTCAGCGAAAAGTACGGAATGATTTGGAGGAAACGTTACCAAAACCATATATGGCAAG 183
Query 211 AGCATTAGCAGCTCCAGATACAGAGCATCCGAATGGAACAGAAGGTCACGATAGCAAAGG 270
||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||
Sbjct 184 AGCATTAGCAGCTCCAGATACAGAGCATCCGAATGGAACAGAAGGTCACGACAGCAGAGG 243
Query 271 AATGAGTGTTATGCAACAACATGTTGCTTTCTTCGACCAAAACGACGATGGAATCGTCTA 330
|||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 244 AATGAGTGTTATGCAACAACATGTCGCTTTCTTCGACCAAAACGACGACGGAATCGTCTA 303
Query 331 TCCTTGGGAGACTTATAAGGGATTTCGTGACCTTGGTTTCAACCCAATTTCCTCTATCTT 390
||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 304 TCCGTGGGAGACTTATAAGGGATTTCGTGACCTCGGTTTCAACCCAATTTCCTCTATCTT 363
Query 391 TTGGACCTTACTCATAAACTTAGCGTTCAGCTACGTTACACTTCCGAGTTGGGTGCCATC 450
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 364 TTGGACCTTACTCATAAACTTAGCGTTTAGCTACGTTACACTTCCGAGTTGGGTGCCATC 423
Query 451 ACCATTATTGCCGGTTTATATCGACAACATACACAAAGCCAAGCATGGGAGTGATTCGAG 510
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 424 ACCATTATTGCCTGTTTATATCGACAACATACACAAAGCCAAGCATGGGAGTGATTCGAG 483
Query 511 CACCTATGACACCGAAGGAAGGTATGTCCCAGTTAACCTCGAGAACATATTTAGCAAATA 570
|||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||
Sbjct 484 CACCTATGACACCGAAGGAAGGTATGTCCCGGTTAACCTCGAGAACGTATTTAGCAAATA 543
Query 571 CGCGCTAACGGTTAAAGATAAGTTATCATTTAAAGAGGTTTGGAATGTAACCGAGGGAAA 630
||||||||||||||| |||||| |||| ||||||||||||||||||||||||||||||||
Sbjct 544 CGCGCTAACGGTTAAGGATAAGCTATCTTTTAAAGAGGTTTGGAATGTAACCGAGGGAAA 603
Query 631 TCGAATGGCAATCGATCCTTTTGGATGGCTTTCAAACAAAGTTGAATGGATACTACTCTA 690
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 604 TCGAATGGCAATCGATCCTTTTGGATGGCTTTCAAACAAAGTTGAATGGATACTACTCTA 663
Query 691 TATTCTTGCTAAGGACGAAGATGGTTTCCTATCTAAAGAAGCTGTGAGAGGTTGCTTTGA 750
|||||| || |||||||| || |||||| | |||||||||||||||||||||||||||||
Sbjct 664 TATTCTGGCAAAGGACGAGGAAGGTTTCATTTCTAAAGAAGCTGTGAGAGGTTGCTTTGA 723
Query 751 TGGAAGTTTATTTGAACAAATTGC---------CAAAGAGAGGGCCAATTCTCGCAAACA 801
|||||| ||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 724 TGGAAGCTTATTTGAACATATTGCTAAAAAGAACAAAGAGAGGGCCAATTCTCGCAAACA 783
Query 802 AGACTAAGAATGTGTGTGTTTGGTTAGCGAATAAAGC 838
|||||||||| | | |||||||||||||||||||||
Sbjct 784 AGACTAAGAAAAT-T-TGTTTGGTTAGCGAATAAAGC 818
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35683050312
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5